BAC Information

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BAC

Clone NameB6Ng01-189A23
Chromosome15 (Build37)
Map Location 78,298,162 - 78,430,422
singlet/doubletdoublet
Overlap geneTmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4
Upstream gene9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17
Downstream geneLrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A23.bB6Ng01-189A23.g
ACCGA013185GA013186
length1,016761
definitionB6Ng01-189A23.b B6Ng01-189A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,298,162 - 78,299,171)(78,429,663 - 78,430,422)
sequence
gaattccctaagactggcagaaggcccaagtcgggactctgacccaagga
catgggaagtacatcttggcacttagcggaagccctgctgtgaaccactg
aagctaggggcctgagtgtgagccatggggaagggatggttaggagctct
ggccacacacatgacccatgtgcacccacctccagatgtgtagagatgga
gatgcatgcatgcgcgcacgcacatacaggcacgaacacatgaatacacg
tacacatacctgcacacacacatgcacacacacacacacacacacacaca
cacaccagctccaggctacaagccaagagtcctgtgtgtagatcccacat
ggatacagattagggcttgggctctctcttgctctccagaaagcctggga
tgtgaagttgtatatgaaatgagaaattaggcaaccaggtccatacactg
ggcctcccctttctctgcacacccgaatcgcaggccaccgggtccctgga
agccctctggtaccctgcaccctcagctgcgctaggttcgctccacctaa
ccttccccaacagcagcttggtgcaccctgtggcctctatgccaggtcac
tctggccgaggagcccctgcaagccgttcaaaggcctagtcaccaggcta
ttgaccagagatcctggttctctgtcccagaggcccctgctttacctttc
aagagtggaaggtaggtgccgggcctgcacacaggcctggaggcctctgt
tttatccaggccaaggtcttttccacccccaactggccagcttaggttgg
atcaatggcctggagccatggcttggggtgtctgggcccttgtcccttgt
ggcctgtggcctcaagttccatgggcctctccttgtcagtctcaggtgcg
ataatgaactgaacacagttaacaggcagatgcaggtatgctagtattag
tgccctgcttctctaacccgccctgccctcatggtgccaggggggctggt
acctgcaggagcagga
gaattcccctctacccagcctcttctgagctctaggaatgcaccccaatc
ccaggcacctgacagcacctccctctagcctctgggcaccgccatcgcca
ggtcttgtcacttttccttccgtgtccacgctccccactgacatccgacc
accttgagggaggtggaagctgggtttcccaatgccactccgcctccctc
tgtgtgctggccctgagtgctctcagtgcccctccctcttgactgaggac
ccactgtgtgcactgctcctcccgtctctcaatcccccatactctgaaga
ggggatttctaactccctgctataggtgatactcttggggttcagagagg
ttaaatggcctctctcagccaacatagctggttgcggtggagctggggta
gcgctctacctacctggggccagagcctacaaccctcctagagccttgtg
aaatccacacgcctgggcaatctgaccctatgccaaccacaacggtgtga
aagcggtcaccttcacccctacctagtctgccctctgtgtcccagtctca
ggccagtgagtgcccagtgcccactgcccggcagctgccacctcagctcc
tcaccacttccctctcacccttcctctttcccatcttatttttggtgcct
gcagcttggcttccaggccagctggccccagttcccctttcctggtgaag
ggggtaccagtgggcgtacagggacggggctcctgaggggtggttaggta
gaaaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78298162_78299171
seq2: B6Ng01-189A23.b_48_1063

seq1  GAATTCCCTAAGACTGGCAGAAGGCCCAAGTCGGGACTCTGACCCAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGACTGGCAGAAGGCCCAAGTCGGGACTCTGACCCAAGGA  50

seq1  CATGGGAAGTACATCTTGGCACTTAGCGGAAGCCCTGCTGTGAACCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAGTACATCTTGGCACTTAGCGGAAGCCCTGCTGTGAACCACTG  100

seq1  AAGCTAGGGGCCTGAGTGTGAGCCATGGGGAAGGGATGGTTAGGAGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGGGGCCTGAGTGTGAGCCATGGGGAAGGGATGGTTAGGAGCTCT  150

seq1  GGCCACACACATGACCCATGTGCACCCACCTCCAGATGTGTAGAGATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACACATGACCCATGTGCACCCACCTCCAGATGTGTAGAGATGGA  200

seq1  GATGCATGCATGCGCGCACGCACATACAGGCACGAACACATGAATACACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATGCATGCGCGCACGCACATACAGGCACGAACACATGAATACACG  250

seq1  TACACATACCTGCACACACACATGCACACACACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACCTGCACACACACATGCACACACACACACACACACACACACA  300

seq1  CACACCAGCTCCAGGCTACAAGCCAAGAGTCCTGTGTGTAGATCCCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGCTCCAGGCTACAAGCCAAGAGTCCTGTGTGTAGATCCCACAT  350

seq1  GGATACAGATTAGGGCTTGGGCTCTCTCTTGCTCTCCAGAAAGCCTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGATTAGGGCTTGGGCTCTCTCTTGCTCTCCAGAAAGCCTGGGA  400

seq1  TGTGAAGTTGTATATGAAATGAGAAATTAGGCAACCAGGTCCATACACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTTGTATATGAAATGAGAAATTAGGCAACCAGGTCCATACACTG  450

seq1  GGCCTCCCCTTTCTCTGCACACCCGAATCGCAGGCCACCGGGTCCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCCTTTCTCTGCACACCCGAATCGCAGGCCACCGGGTCCCTGGA  500

seq1  AGCCCTCTGGTACCCTGCACCCTCAGCTGCGCTAGGTTCGCTCCACCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTGGTACCCTGCACCCTCAGCTGCGCTAGGTTCGCTCCACCTAA  550

seq1  CCTTCCCCAACAGCAGCTTGGTGCACCCTGTGGCCTCTATGCCAGGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCAACAGCAGCTTGGTGCACCCTGTGGCCTCTATGCCAGGTCAC  600

seq1  TCTGGCCGAGGAGCCCCTGCAAGCCGTTCAAAGGCCTAGTCACCAGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCGAGGAGCCCCTGCAAGCCGTTCAAAGGCCTAGTCACCAGGCTA  650

seq1  TTGACCAGAGATCCTGGTTCTCTGTCCCAGAGGCCCCTGC-TTACC-TTC  698
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  TTGACCAGAGATCCTGGTTCTCTGTCCCAGAGGCCCCTGCTTTACCTTTC  700

seq1  AAGAGTGGAAGGTAGGTGCCGGGCCTGCACACAGGCCTGGAGGCCTCTG-  747
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGAGTGGAAGGTAGGTGCCGGGCCTGCACACAGGCCTGGAGGCCTCTGT  750

seq1  TTTATCCAGGCCAAGGTC-TTTCCACCCCCAACTGGCCAGCTTAGGTTGG  796
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTATCCAGGCCAAGGTCTTTTCCACCCCCAACTGGCCAGCTTAGGTTGG  800

seq1  ATCAATGGCCTGGAGCCATGGC-TGGGGTGTCT-GGCCCTTGTCCCTTGT  844
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  ATCAATGGCCTGGAGCCATGGCTTGGGGTGTCTGGGCCCTTGTCCCTTGT  850

seq1  GGCCTGTGGCCCCAAGTTCCATGGGCCTCTCC-TGTCAGGTCCAGG-GCG  892
      ||||||||||| |||||||||||||||||||| ||||||   |||| |||
seq2  GGCCTGTGGCCTCAAGTTCCATGGGCCTCTCCTTGTCAGTCTCAGGTGCG  900

seq1  ACAATGAAACTGAACACAGGTAAACAGGCAGGAGGCAGG-AGGCAAGTAG  941
      | |||| ||||||||||| || |||||||| || ||||| | || |||| 
seq2  ATAATG-AACTGAACACA-GTTAACAGGCA-GATGCAGGTATGCTAGTA-  946

seq1  TTAGTGCCC-GCCTCTCTAACCCCGCCCTGCCC-CATGGGTGCCCAGGGG  989
      ||||||||| || ||||||| |||||||||||| ||| ||||||  ||||
seq2  TTAGTGCCCTGCTTCTCTAA-CCCGCCCTGCCCTCAT-GGTGCCAGGGGG  994

seq1  GCTGG-ACCTGCAGGAGCAGGA  1010
      ||||| ||||||||||||||||
seq2  GCTGGTACCTGCAGGAGCAGGA  1016

seq1: chr15_78429663_78430422
seq2: B6Ng01-189A23.g_65_825 (reverse)

seq1  CCTCCCC-TTCTACCTAACCACCCCTCAGGAGCCCCGTCCCTGTACGCCC  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTTCTACCTAACCACCCCTCAGGAGCCCCGTCCCTGTACGCCC  50

seq1  ACTGGTACCCCCTTCACCAGGAAAGGGGAACTGGGGCCAGCTGGCCTGGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTACCCCCTTCACCAGGAAAGGGGAACTGGGGCCAGCTGGCCTGGA  100

seq1  AGCCAAGCTGCAGGCACCAAAAATAAGATGGGAAAGAGGAAGGGTGAGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCTGCAGGCACCAAAAATAAGATGGGAAAGAGGAAGGGTGAGAG  150

seq1  GGAAGTGGTGAGGAGCTGAGGTGGCAGCTGCCGGGCAGTGGGCACTGGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGTGAGGAGCTGAGGTGGCAGCTGCCGGGCAGTGGGCACTGGGC  200

seq1  ACTCACTGGCCTGAGACTGGGACACAGAGGGCAGACTAGGTAGGGGTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGGCCTGAGACTGGGACACAGAGGGCAGACTAGGTAGGGGTGAA  250

seq1  GGTGACCGCTTTCACACCGTTGTGGTTGGCATAGGGTCAGATTGCCCAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCGCTTTCACACCGTTGTGGTTGGCATAGGGTCAGATTGCCCAGG  300

seq1  CGTGTGGATTTCACAAGGCTCTAGGAGGGTTGTAGGCTCTGGCCCCAGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGATTTCACAAGGCTCTAGGAGGGTTGTAGGCTCTGGCCCCAGGT  350

seq1  AGGTAGAGCGCTACCCCAGCTCCACCGCAACCAGCTATGTTGGCTGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGCGCTACCCCAGCTCCACCGCAACCAGCTATGTTGGCTGAGAG  400

seq1  AGGCCATTTAACCTCTCTGAACCCCAAGAGTATCACCTATAGCAGGGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTTAACCTCTCTGAACCCCAAGAGTATCACCTATAGCAGGGAGT  450

seq1  TAGAAATCCCCTCTTCAGAGTATGGGGGATTGAGAGACGGGAGGAGCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCCCCTCTTCAGAGTATGGGGGATTGAGAGACGGGAGGAGCAGT  500

seq1  GCACACAGTGGGTCCTCAGTCAAGAGGGAGGGGCACTGAGAGCACTCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTGGGTCCTCAGTCAAGAGGGAGGGGCACTGAGAGCACTCAGG  550

seq1  GCCAGCACACAGAGGGAGGCGGAGTGGCATTGGGAAACCCAGCTTCCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACACAGAGGGAGGCGGAGTGGCATTGGGAAACCCAGCTTCCACC  600

seq1  TCCCTCAAGGTGGTCGGATGTCAGTGGGGAGCGTGGACACGGAAGGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAAGGTGGTCGGATGTCAGTGGGGAGCGTGGACACGGAAGGAAAA  650

seq1  GTGACAAGACCTGGCGATGGCGGTGCCCAGAGGCTAGAGGGAGGTGCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGACCTGGCGATGGCGGTGCCCAGAGGCTAGAGGGAGGTGCTGT  700

seq1  CAGGTGCCTGGGATTGGGGTGCATTCCTAGAGCTCAGAAGAGGCTGGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTGGGATTGGGGTGCATTCCTAGAGCTCAGAAGAGGCTGGGTA  750

seq1  GAGGGGAATTC  760
      |||||||||||
seq2  GAGGGGAATTC  761