BAC Information

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BAC

Clone NameB6Ng01-191O08
Chromosome15 (Build37)9 (Build37)
Map Location 69,011,020 - 69,011,10189,942,758 - 89,943,715
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191O08.bB6Ng01-191O08.g
ACCGA015277GA015278
length488959
definitionB6Ng01-191O08.b B6Ng01-191O08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,011,020 - 69,011,101)(89,942,758 - 89,943,715)
sequence
aagacccaggatcagatgcaaagaattagcagggaccattcagccagccc
catattgagaagtcaactctctacagggaatgtcaggtaggtaagtagaa
agataaatgcaagagagatgtatgaattaatgatagataaatagatagat
agatagatagatagatagatagatagatagatagatagacacacagatac
atagagagatatatagatagatacatagatacatagattgatacatcgat
agattgatacatagacaaatagatgacagacacatagatagttacataga
tacatagatgacagacacatggatagttacatagatacatagatgagacg
cacatagatagatgtgtgatatatgtagatgatgtagatacataaatgat
agatacatcaatatataaatgatagatagatagatagatagatagataga
tagatagatagatagatagatagatagacagacagaca

gaattcagttaacaagcacagttagccagaagcagaaccacagaagccaa
aagcaaggttagtacatttagagactttcccagaactatgggctttgatg
gattaagtctttgttttcatttagcaggtggtgctctctcctcaataagt
tttgtggcctgagtggtattttcataattggagtcagttgtgctaagacc
tgggccgtctgagggtctgagaccctgttacaataggaggaacagaggtg
agggagaaaatgaggtcagaggaaatcagaagaggagggaaaattgggca
aagaggaaagactggggctataaatcagttgttagtgtatttgcttagca
tgcaggaaaccctgggtttggtctctagttttagctgccgggtgggtggg
aacgcctgcctttaatctcagcactccaggaggcagagtgcctgagcttc
aggccagcctggtctacagatcaagtgccaagaaagccagggctataggg
agaaacactgtcttgaaaaaaaaaaaagcaaaacaacaaaatccctagca
gcatatgacatgtagcacagtagtatgtgcttatcatttcggcactcagg
caggggaatcaaaaggacaaaggcatactagagagttacagtgagaggcc
aggctaggctacaatagaccttatctaaaaagagaaaaacaaacaacagc
tacagactcaggaaggggtgatgcaggaagtgagccagagagcttagaaa
tcccaagaatcagaaggcacaagccaaggaaaacaggtggactctttggg
ctggaagggccttgcttgactccagctaaggagtctgagtcctataacaa
cacagcattgagttctctcaacagtcgtagtgactcaaaaggctagtttg
cctccaggtccttgagaaaggagactctccgggcaactttctttcttcct
ttcttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_69011020_69011101
seq2: B6Ng01-191O08.b_183_539 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50

seq1  --------------------------------------------------  0
                                                        
seq2  TCTATCTATCTATCTATCATTTATATATTGATGTATCTATCATTTATGTA  100

seq1  --------------------------------------------------  0
                                                        
seq2  TCTACATCATCTACATATATCACACATCTATCTATGTGCGTCTCATCTAT  150

seq1  --------------------------------------------------  0
                                                        
seq2  GTATCTATGTAACTATCCATGTGTCTGTCATCTATGTATCTATGTAACTA  200

seq1  --------------------------------------------------  0
                                                        
seq2  TCTATGTGTCTGTCATCTATTTGTCTATGTATCAATCTATCGATGTATCA  250

seq1  ---------------------------TGTCTGTCTGTCTATCTTTGTCT  23
                                 | ||| ||| | ||||  ||| |
seq2  ATCTATGTATCTATGTATCTATCTATATATCTCTCTATGTATC--TGTGT  298

seq1  GTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  73
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  348

seq1  CTATCTATC  82
       ||||||||
seq2  TTATCTATC  357


seq1: chr9_89942758_89943715
seq2: B6Ng01-191O08.g_67_1025 (reverse)

seq1  AAGGAAGAAAGGAAGAAAGAAAGTGCCCGGGAGAGTTCTCCTTTCTCAAG  50
      ||||||||||||||||||||||||  || |||||| ||||||||||||||
seq2  AAGGAAGAAAGGAAGAAAGAAAGTTGCCCGGAGAG-TCTCCTTTCTCAAG  49

seq1  GACCTGGAGGCAAACTAG-CTTCTGAGTCACTACGACTGTTGAGAGAACT  99
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  GACCTGGAGGCAAACTAGCCTTTTGAGTCACTACGACTGTTGAGAGAACT  99

seq1  CAATGCTGTGTTGTTATAGGACTCAGACTCCTTAGCTGGAGTCAAGCAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGTGTTGTTATAGGACTCAGACTCCTTAGCTGGAGTCAAGCAAG  149

seq1  GCCCTTCCAGCCCAAAGAGTCCACCTGTTTTCCTTGGCTTGTGCCTTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCAGCCCAAAGAGTCCACCTGTTTTCCTTGGCTTGTGCCTTCTG  199

seq1  ATTCTTGGGA-TTCTAAGCTCTCTGGCTCACTTCCTGCATCACCCCTTCC  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGGATTTCTAAGCTCTCTGGCTCACTTCCTGCATCACCCCTTCC  249

seq1  TGAGTCTGTAGCTGTTGTTTGTTTTTCTCTTTTTAGATAAGGTCTATTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGTAGCTGTTGTTTGTTTTTCTCTTTTTAGATAAGGTCTATTGT  299

seq1  AGCCTAGCCTGGCCTCTCACTGTAACTCTCTAGTATGCCTTTGTCCTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCCTGGCCTCTCACTGTAACTCTCTAGTATGCCTTTGTCCTTTT  349

seq1  GATTCCCCTGCCTGAGTGCCGAAATGATAAGCACATACTACTGTGCTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCCTGCCTGAGTGCCGAAATGATAAGCACATACTACTGTGCTACA  399

seq1  TGTCATATGCTGCTAGGGATTTTGTTGTTTTGCTTTTTTTTTTTTCAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATGCTGCTAGGGATTTTGTTGTTTTGCTTTTTTTTTTTTCAAGA  449

seq1  CAGTGTTTCTCCCTATAGCCCTGGCTTTCTTGGCACTTGATCTGTAGACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCTCCCTATAGCCCTGGCTTTCTTGGCACTTGATCTGTAGACC  499

seq1  AGGCTGGCCTGAAGCTCAGGCACTCTGCCTCCTGGAGTGCTGAGATTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTGAAGCTCAGGCACTCTGCCTCCTGGAGTGCTGAGATTAAA  549

seq1  GGCAGGCGTTCCCACCCACCCGGCAGCTAAAACTAGAGACCAAACCCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGTTCCCACCCACCCGGCAGCTAAAACTAGAGACCAAACCCAGG  599

seq1  GTTTCCTGCATGCTAAGCAAATACACTAACAACTGATTTATAGCCCCAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGCATGCTAAGCAAATACACTAACAACTGATTTATAGCCCCAGT  649

seq1  CTTTCCTCTTTGCCCAATTTTCCCTCCTCTTCTGATTTCCTCTGACCTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTTTGCCCAATTTTCCCTCCTCTTCTGATTTCCTCTGACCTCA  699

seq1  TTTTCTCCCTCACCTCTGTTCCTCCTATTGTAACAGGGTCTCAGACCCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTCACCTCTGTTCCTCCTATTGTAACAGGGTCTCAGACCCTC  749

seq1  AGACGGCCCAGGTCTTAGCACAACTGACTCCAATTATGAAAATACCACTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCCCAGGTCTTAGCACAACTGACTCCAATTATGAAAATACCACTC  799

seq1  AGGCCACAAAACTTATTGAGGAGAGAGCACCACCTGCTAAATGAAAACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAAAACTTATTGAGGAGAGAGCACCACCTGCTAAATGAAAACAA  849

seq1  AGACTTAATCCATCAAAGCCCATAGTTCTGGGAAAGTCTCTAAATGTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAATCCATCAAAGCCCATAGTTCTGGGAAAGTCTCTAAATGTACT  899

seq1  AACCTTGCTTTTGGCTTCTGTGGTTCTGCTTCTGGCTAACTGTGCTTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCTTTTGGCTTCTGTGGTTCTGCTTCTGGCTAACTGTGCTTGTT  949

seq1  AACTGAATTC  958
      ||||||||||
seq2  AACTGAATTC  959


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