BAC Information

Click to search

BAC

Clone NameB6Ng01-191O17
Chromosome15 (Build37)
Map Location 4,424,489 - 4,425,672
singlet/doubletsinglet
Overlap genePlcxd3
Upstream geneGhr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
Downstream geneC6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191O17.bB6Ng01-191O17.g
ACCGA015295GA015296
length1,172995
definitionB6Ng01-191O17.b B6Ng01-191O17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttggtgtgatgtgtactgactgaagaaggaagtcactaactga
gttgttcttgccttcatttcttcctagaaaccttcaagaaaaacagtagg
actctctaaattggaaacaaaaattactgaaagaatatttaagaaatgaa
atgtttagcataaaatcatatttaaaaacatattaccagggctggagatt
tggctcagcaattcagagagtttgttccacattcagaaggattgtagttc
accccaccttcccacccagtgcctgtcatttagccatgtggcaagcacac
acctgtaactctaactctgaagtatacaacactcttctctgcccttcaca
tacatcaatacatgcaacacacacacataggcacatacacacaacaaaca
cacagagatacactcacacatacagtaaataaaaaatatatatttgaaaa
gttattgccataaatatttaaaataggtaagtaacactaataggtgaaat
gttaatacttcagacatgtgctctcccaacacaccagtatacgtccatct
cttgcttatcaaactgactcaatgatcaactttttcctcatttttgtgat
gatcatcaaaaatcaaatggtattcacctagaaacatgtaagaagcattc
tctactgagaagctcattataaaatgagcaatagatactggctaatacaa
aacattctatgatagagaggaggtaagccatggcagttccctaggctggg
atctcatctcttgacagctatattttgtaccagctttggttttcttgtta
aagcttttatttaattgaaagtaaaatggttacagatagaactgctggct
tattatctggctcagaaaggggtgagaaacagtgatatttatgtgccctt
ctgtaagtgtgtgctacacgtgtgtcacagagtgtacaagagtatgtgta
ggtaaaaagcatactttgtacaaaatttcttgattcaagactttaaaatt
cttatactgtacttagttttgattttggcatttacttacaagttattcaa
actacgcagtactgtatgatgaaatttatcttaattcatagcacagtaga
tcactttatagaaggttctaagtagaacagcatacattgtaaggcatatc
tagacgtacaataaatggcttc
gaattccttgatccacatagacctaagctttttgtacaaggagataagaa
tggatcaatttgcactcttctacatgctaactgccagttgagccaacacc
atttgttaaagatgctgtcttctttccactggatggttttagttcctttg
tcaaagatcaagtgactatagtttgtgggttcatttctgggtcttcttca
attctgttcctttgatctacctatctgttgctgtaccagtaccatgcagt
ttttatgataattgctctttagtacagcttgaggttaggcatggtgattc
cacgagaggttctttcattattgagaatagttttttttgttttgttttgt
tttgttttttgtttttttcgagacagggtttctctgtatagccctggctg
tcctgaaactcactttgtagaccaggctagcctcgaactcagaaatccac
ctgcctctgcctcccaagtgctgggattaaaggtgggtgccaccacgtct
ttcagttcctaagttagagtcacatcaaggtattactctgatacctaaag
cacacaaagacacaacaaagaaagacaacttctgactgatttcccttatg
aagatcgatgaaaaatactcaataaaattctcgcaaaccaaatccaagaa
cacatcaaaatgatcatccatcatggtcaagtaggcttcatctcagggat
gcaaggatggttcaatatatggaaatccatcaatttaatccactatataa
tgaaactcaaagggaaaaaccccatgatcatctaattagaagctgagaaa
gcatttgacaaagtccacaccccttcatgataaaagtcttgggaagatca
ggaactcaaggcccatacttaaacataataaaaacaatatacagcacact
agtagccaacatcaaagtaagtggtgagaaactgggagccattccactaa
aagcaaggactagacaacgctgctcattttctccctacctattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_4424489_4425672
seq2: B6Ng01-191O17.b_45_1216 (reverse)

seq1  GAAGCCATTTATTGTAACGTCTAGGGAATAATTTCCTTACAATGTATGCT  50
      ||||||||||||||| ||||||||   |||  | ||||||||||||||||
seq2  GAAGCCATTTATTGT-ACGTCTAG---ATA--TGCCTTACAATGTATGCT  44

seq1  TGTCTAACTTTTAGAAC--TCTATAAAGTGATCTACTGTGCTATGAAATT  98
        ||||    |||||||  ||||||||||||||||||||||||||||  |
seq2  GTTCTA---CTTAGAACCTTCTATAAAGTGATCTACTGTGCTATGAA--T  89

seq1  TAAGATAAATTTCATCATAACAGTAACTGCGTAGTTTGAATAAACTTGTA  148
      |||||||||||||||||| ||||| |||||||||||||||| ||||||||
seq2  TAAGATAAATTTCATCAT-ACAGT-ACTGCGTAGTTTGAAT-AACTTGTA  136

seq1  AGTTAATGCCAAAATCAAAACTAAGTACAGTATAAGAATTTTAAAGTCTT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGCCAAAATCAAAACTAAGTACAGTATAAGAATTTTAAAGTCTT  186

seq1  GAATCAAGAAATTTTTGTACAAAGTATGCTTTTTACCTACACATACTCTT  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGAAA-TTTTGTACAAAGTATGCTTTTTACCTACACATACTCTT  235

seq1  GTACACTCTGTGACACACGTGTAGCACACACTTACAGAAGGGCACATAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTCTGTGACACACGTGTAGCACACACTTACAGAAGGGCACATAAA  285

seq1  TATCACTGTTTCTCACCCC-TTCTGAGCCAGATAATAAGCCAGCAGTTCT  347
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATCACTGTTTCTCACCCCTTTCTGAGCCAGATAATAAGCCAGCAGTTCT  335

seq1  ATCTGTAACCATTTTACTTTCAATTAAATAAAAGCTTTAACAAGAAAACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAACCATTTTACTTTCAATTAAATAAAAGCTTTAACAAGAAAACC  385

seq1  AAAGCTGGTACAAAATATAGCTGTCAAGAGATGAGATCCCAGCCTAGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGTACAAAATATAGCTGTCAAGAGATGAGATCCCAGCCTAGGGA  435

seq1  ACTGCCATGGCTTACCTCCTCTCTATCATAGAATGTTTTGTATTAGCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATGGCTTACCTCCTCTCTATCATAGAATGTTTTGTATTAGCCAG  485

seq1  TATCTATTGCTCATTTTATAATGAGCTTCTCAGTAGAGAATGCTTCTTAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTGCTCATTTTATAATGAGCTTCTCAGTAGAGAATGCTTCTTAC  535

seq1  ATGTTTCTAGGTGAATACCATTTGATTTTTGATGATCATCACAAAAATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTAGGTGAATACCATTTGATTTTTGATGATCATCACAAAAATGA  585

seq1  GGAAAAAGTTGATCATTGAGTCAGTTTGATAAGCAAGAGATGGACGTATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGTTGATCATTGAGTCAGTTTGATAAGCAAGAGATGGACGTATA  635

seq1  CTGGTGTGTTGGGAGAGCACATGTCTGAAGTATTAACATTTCACCTATTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTTGGGAGAGCACATGTCTGAAGTATTAACATTTCACCTATTA  685

seq1  GTGTTACTTACCTATTTTAAATATTTATGGCAATAACTTTTCAAATATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTTACCTATTTTAAATATTTATGGCAATAACTTTTCAAATATAT  735

seq1  ATTTTTTATTTACTGTATGTGTGAGTGTATCTCTGTGTGTTTGTTGTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTTACTGTATGTGTGAGTGTATCTCTGTGTGTTTGTTGTGTG  785

seq1  TATGTGCCTATGTGTGTGTGTTGCATGTATTGATGTATGTGAAGGGCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCCTATGTGTGTGTGTTGCATGTATTGATGTATGTGAAGGGCAGA  835

seq1  GAAGAGTGTTGTATACTTCAGAGTTAGAGTTACAGGTGTGTGCTTGCCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGTTGTATACTTCAGAGTTAGAGTTACAGGTGTGTGCTTGCCAC  885

seq1  ATGGCTAAATGACAGGCACTGGGTGGGAAGGTGGGGTGAACTACAATCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAATGACAGGCACTGGGTGGGAAGGTGGGGTGAACTACAATCCT  935

seq1  TCTGAATGTGGAACAAACTCTCTGAATTGCTGAGCCAAATCTCCAGCCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGTGGAACAAACTCTCTGAATTGCTGAGCCAAATCTCCAGCCCT  985

seq1  GGTAATATGTTTTTAAATATGATTTTATGCTAAACATTTCATTTCTTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATATGTTTTTAAATATGATTTTATGCTAAACATTTCATTTCTTAAA  1035

seq1  TATTCTTTCAGTAATTTTTGTTTCCAATTTAGAGAGTCCTACTGTTTTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCAGTAATTTTTGTTTCCAATTTAGAGAGTCCTACTGTTTTTC  1085

seq1  TTGAAGGTTTCTAGGAAGAAATGAAGGCAAGAACAACTCAGTTAGTGACT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGTTTCTAGGAAGAAATGAAGGCAAGAACAACTCAGTTAGTGACT  1135

seq1  TCCTTCTTCAGTCAGTACACATCACACCAAGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCAGTCAGTACACATCACACCAAGGAATTC  1172