BAC Information

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BAC

Clone NameB6Ng01-192E19
Chromosome15 (Build37)
Map Location 102,011,328 - 102,201,150
singlet/doubletdoublet
Overlap geneCsad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7
Upstream geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2
Downstream geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192E19.bB6Ng01-192E19.g
ACCGA015573GA015574
length1,160923
definitionB6Ng01-192E19.b B6Ng01-192E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,011,328 - 102,012,472)(102,200,219 - 102,201,150)
sequence
gaattctctctaacatttaaaaggatgtacactgctgggtggagggagag
gtggctcagcagctgaaagcactggagaacccacacacacatataaaata
aatttaaagtaaatcttgtaacaataaaagcattgtctgctcttccaggg
gacccaggttcaagctcccgcatgacaactcataactgtgtgtaaatcca
gtctcagaggatccaacaccctcttctggctttcctgagagccaggcaca
cacattgacacacagatacacatacatacaggaaaatcacacacacacac
acacacacacacacacaaaagcaaaattaaaaacaatgaacaggtaatac
tagctcacaactatctcttccccctaaacagaatacataaaaccaaccag
agctggagacagacagctcagaacaagagcacatgcctacctgggctccc
acaccaaacgaacaaaatgcaaacagcaacaagaagacacactgtcaact
gtgtgtacacacactggtcaactgtgtgtatacagtgaaacatgagccca
aacatgacaccaagaggcaggtgtgacagtgcacacatgcaatcccagca
tctgggaagcagaggcaggcaagtctctgtgaattcaaggccagcctggt
ctccactgacagctctgggacagcaagaaccacatagtgagaccctgtct
caaaaatgaagagaagctaagaaaataatctcctgtggcaaggcctggtg
gcactggcctataatctcagctattcaagcagttgaggaagactgacaag
tttaaaaccagcaagagatacatagagaaaccctgtctcaaagaacatca
atcagtcaatcaactagttaattaaataaagttccaaagtgagctatgga
gcgctcagtgatggagcacttgctttgaaatgtccgctgccccaccaccc
cacgtatacacacaacgctacaggaagccaaagactggcaagcgtggtac
ccggcttcattaattattgctatgtgtgatggtgccaccaccctctcagc
atggtgagagggccagagcagatggttaatattttgagttccaagggcca
gccaggattaataattccaggccatttgaggggaggctacaaagttaaac
tctctgtctc
gaattcagaaaccagggcctaaaggcactgggtgaaggtggcatctctga
actttaagcagcgctttgcccggctccaggaggcttgtccgtgtactctt
cctccaccagatttctggctctcacatcttcctgggaccctgcttctcct
gtttctttttctaacattgttcggatttgactgcttctatcctttcccac
gaggaagcggcagggctgaccctcgcctcagttcacccatctcaagtctc
tcctttcatctctttatccatcccttccgtgtccaatcgagtttgagtgc
caactgccttcctcactttgtatgtccctagggtctagatttgcctcctg
cctcagtttcctgacccacgtatcctctgttcagctagtaatgcagtaat
ttctggaaagcttccattttttctttccaagtttcttagctaaagcccta
gaaattcagctaacactttggcctcagactcccgttccgtaccccacccc
ccatggaggagactacgaggtcataggaacatcccaccacgggcacttcc
ttttgggcagacgggtggggtggcccgtgtaatcatcggacacaattatg
ccctatttatactccgtccccgccccccacctgctggcagctttaccttc
cacctcctccggaccggaccgggtcacttttgcagctcccccccccccct
tgttcctctgaatcattgtgtcccatctttgttcctctgagttttctttt
tcttttaaggtggtttttgttgttgttgctttttcttttgtgctctctgt
tttgtctttttcaaagccaggtgtctgggttttttttgtttgtttggttt
tgtatgttctttttctcctttctctttcttcttcttcttcttccttcttt
ctttcttgggggggggggaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102011328_102012472
seq2: B6Ng01-192E19.b_45_1204

seq1  GAATTCTCTCTAACATTTAAAAGGATGTACACTGCTGGGTGGAGGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTAACATTTAAAAGGATGTACACTGCTGGGTGGAGGGAGAG  50

seq1  GTGGCTCAGCAGCTGAAAGCACTGGAGAACCCACACACACATATAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCAGCAGCTGAAAGCACTGGAGAACCCACACACACATATAAAATA  100

seq1  AATTTAAAGTAAATCTTGTAACAATAAAAGCATTGTCTGCTCTTCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGTAAATCTTGTAACAATAAAAGCATTGTCTGCTCTTCCAGGG  150

seq1  GACCCAGGTTCAAGCTCCCGCATGACAACTCATAACTGTGTGTAAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGTTCAAGCTCCCGCATGACAACTCATAACTGTGTGTAAATCCA  200

seq1  GTCTCAGAGGATCCAACACCCTCTTCTGGCTTTCCTGAGAGCCAGGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAGGATCCAACACCCTCTTCTGGCTTTCCTGAGAGCCAGGCACA  250

seq1  CACATTGACACACAGATACACATACATACAGGAAAATCACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGACACACAGATACACATACATACAGGAAAATCACACACACACAC  300

seq1  ACACACACACACACACAAAAGCAAAATTAAAAACAATGAACAGGTAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAAAAGCAAAATTAAAAACAATGAACAGGTAATAC  350

seq1  TAGCTCACAACTATCTCTTCCCCCTAAACAGAATACATAAAACCAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCACAACTATCTCTTCCCCCTAAACAGAATACATAAAACCAACCAG  400

seq1  AGCTGGAGACAGACAGCTCAGAACAAGAGCACATGCCTACCTGGGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGACAGACAGCTCAGAACAAGAGCACATGCCTACCTGGGCTCCC  450

seq1  ACACCAAACGAACAAAATGCAAACAGCAACAAGAAGACACACTGTCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAACGAACAAAATGCAAACAGCAACAAGAAGACACACTGTCAACT  500

seq1  GTGTGTACACACACTGGTCAACTGTGTGTATACAGTGAAACATGAGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACACACACTGGTCAACTGTGTGTATACAGTGAAACATGAGCCCA  550

seq1  AACATGACACCAAGAGGCAGGTGTGACAGTGCACACATGCAATCCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACACCAAGAGGCAGGTGTGACAGTGCACACATGCAATCCCAGCA  600

seq1  TCTGGGAAGCAGAGGCAGGCAAGTCTCTGTGAATTCAAGGCCAGCCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGCAGAGGCAGGCAAGTCTCTGTGAATTCAAGGCCAGCCTGGT  650

seq1  CTCCACTGACAGCTCTGGGACAGCAAGAACCACATAGTGAGACCCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGACAGCTCTGGGACAGCAAGAACCACATAGTGAGACCCTGTCT  700

seq1  CAAAAATGAAGAGAAGCTAAGAAAATAATCTCCTGTGGCAAGGCCTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGAAGAGAAGCTAAGAAAATAATCTCCTGTGGCAAGGCCTGGTG  750

seq1  GCACTGGCCTATAATCTCAGCTATTCAAGCAGTTGAGGAAGACTGACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGCCTATAATCTCAGCTATTCAAGCAGTTGAGGAAGACTGACAAG  800

seq1  TTTAAAACCAGCAAGAGATACATAGAGAAACCCTGTCTCAAAGAACATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACCAGCAAGAGATACATAGAGAAACCCTGTCTCAAAGAACATCA  850

seq1  ATCAGTCAATCAACTAGTTAATTAATTAAAGTTCCAAAGTGAGCTATGGA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCAGTCAATCAACTAGTTAATTAAATAAAGTTCCAAAGTGAGCTATGGA  900

seq1  GCGCTCAGTGATGGAGCACTTGC-TTGAAATGTCCGCTG-CCCACCACCC  948
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  GCGCTCAGTGATGGAGCACTTGCTTTGAAATGTCCGCTGCCCCACCACCC  950

seq1  CACGTATACACACAACGCTACAGGAAGCCAAAGGACTGGCAAGCGTGGTA  998
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACGTATACACACAACGCTACAGGAAGCCAAA-GACTGGCAAGCGTGGTA  999

seq1  CCCCGCTTCATTAAATTATGCTATGTGTGATGGTG-CAC--ACCTCTCAG  1045
      ||| |||||||||| |  ||||||||||||||||| |||   ||||||||
seq2  CCCGGCTTCATTAATTATTGCTATGTGTGATGGTGCCACCACCCTCTCAG  1049

seq1  CAT-GTGAGAGG--CAGAAGCAGATGGTT-ATA-TTTGAGTTC--AAGGC  1088
      ||| ||||||||  ||| ||||||||||| ||| |||||||||  | |||
seq2  CATGGTGAGAGGGCCAG-AGCAGATGGTTAATATTTTGAGTTCCAAGGGC  1098

seq1  CAGCCAG--ATATAAATTCCAGGCCA-TTGAGGGAGGGCTACAAAGTTAA  1135
      |||||||   ||  |||||||||||| |||||||  ||||||||||||||
seq2  CAGCCAGGATTAATAATTCCAGGCCATTTGAGGGGAGGCTACAAAGTTAA  1148

seq1  A--CTCTGTCTC  1145
      |  |||||||||
seq2  ACTCTCTGTCTC  1160

seq1: chr15_102200219_102201150
seq2: B6Ng01-192E19.g_66_988 (reverse)

seq1  CACCT-CCCCCCCCCAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAA  49
      ||||| ||||||||| ||||||||||||||| |||||   |||||   ||
seq2  CACCTCCCCCCCCCCCAAGAAAGAAAGAAGG-AAGAA--GAAGAA--GAA  45

seq1  GAAAGAGAAAGGAGAAAAAAGAAACAATAACAAAAACAAAACAAAACAAA  99
      |||||||||||||||||||   ||||   |||||| ||||   |||||||
seq2  GAAAGAGAAAGGAGAAAAA--GAACA--TACAAAACCAAA--CAAACAAA  89

seq1  AAAAACCCAGACACCTGGCTTTGAAAAAGACAAAACAGAGAGCACAAAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAGACACCTGGCTTTGAAAAAGACAAAACAGAGAGCACAAAAG  139

seq1  AAAAAGCAACAACAACAAAAACCACCTTAAAAGAAAAAGAAAACTCAGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAACAACAACAAAAACCACCTTAAAAGAAAAAGAAAACTCAGAG  189

seq1  GAACAAAGATGGGACACAATGATTCAGAGGAACAA-GGGGGGGGGGGAGC  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAACAAAGATGGGACACAATGATTCAGAGGAACAAGGGGGGGGGGGGAGC  239

seq1  TGCAAAAGTGACCCGGTCCGGTCCGGAGGAGGTGGAAGGTAAAGCTGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGTGACCCGGTCCGGTCCGGAGGAGGTGGAAGGTAAAGCTGCCA  289

seq1  GCAGGTGGGGGGCGGGGACGGAGTATAAATAGGGCATAATTGTGTCCGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGGGGGCGGGGACGGAGTATAAATAGGGCATAATTGTGTCCGAT  339

seq1  GATTACACGGGCCACCCCACCCGTCTGCCCAAAAGGAAGTGCCCGTGGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACACGGGCCACCCCACCCGTCTGCCCAAAAGGAAGTGCCCGTGGTG  389

seq1  GGATGTTCCTATGACCTCGTAGTCTCCTCCATGGGGGGTGGGGTACGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCCTATGACCTCGTAGTCTCCTCCATGGGGGGTGGGGTACGGAA  439

seq1  CGGGAGTCTGAGGCCAAAGTGTTAGCTGAATTTCTAGGGCTTTAGCTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGTCTGAGGCCAAAGTGTTAGCTGAATTTCTAGGGCTTTAGCTAAG  489

seq1  AAACTTGGAAAGAAAAAATGGAAGCTTTCCAGAAATTACTGCATTACTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGAAAGAAAAAATGGAAGCTTTCCAGAAATTACTGCATTACTAG  539

seq1  CTGAACAGAGGATACGTGGGTCAGGAAACTGAGGCAGGAGGCAAATCTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGAGGATACGTGGGTCAGGAAACTGAGGCAGGAGGCAAATCTAG  589

seq1  ACCCTAGGGACATACAAAGTGAGGAAGGCAGTTGGCACTCAAACTCGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGGACATACAAAGTGAGGAAGGCAGTTGGCACTCAAACTCGATT  639

seq1  GGACACGGAAGGGATGGATAAAGAGATGAAAGGAGAGACTTGAGATGGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGAAGGGATGGATAAAGAGATGAAAGGAGAGACTTGAGATGGGT  689

seq1  GAACTGAGGCGAGGGTCAGCCCTGCCGCTTCCTCGTGGGAAAGGATAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGGCGAGGGTCAGCCCTGCCGCTTCCTCGTGGGAAAGGATAGAA  739

seq1  GCAGTCAAATCCGAACAATGTTAGAAAAAGAAACAGGAGAAGCAGGGTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAATCCGAACAATGTTAGAAAAAGAAACAGGAGAAGCAGGGTCC  789

seq1  CAGGAAGATGTGAGAGCCAGAAATCTGGTGGAGGAAGAGTACACGGACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGATGTGAGAGCCAGAAATCTGGTGGAGGAAGAGTACACGGACAA  839

seq1  GCCTCCTGGAGCCGGGCAAAGCGCTGCTTAAAGTTCAGAGATGCCACCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGGAGCCGGGCAAAGCGCTGCTTAAAGTTCAGAGATGCCACCTT  889

seq1  CACCCAGTGCCTTTAGGCCCTGGTTTCTGAATTC  932
      ||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGCCTTTAGGCCCTGGTTTCTGAATTC  923