BAC Information

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BAC

Clone NameB6Ng01-192I02
Chromosome15 (Build37)
Map Location 45,281,790 - 45,425,976
singlet/doubletdoublet
Overlap genenone
Upstream genePkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192I02.bB6Ng01-192I02.g
ACCGA015729GA015730
length1,2001,133
definitionB6Ng01-192I02.b B6Ng01-192I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,281,790 - 45,282,970)(45,424,868 - 45,425,976)
sequence
gaattcctctgtaataaaattaaacattaaatgaatagattaatgatgtg
gttagagaagttggttgtacttataagtgataaacgattatttttaagca
taaatagaaaattagatataaattctaatataattcagataggtcaaaaa
gaaaatctcagaaggaaacttccaatatctattaatgtatattcaggcat
attaaatggttgttattactattttctgtaaccaatagtagcaatagaat
tagcaaagcaagacattataaaaaaacactgtttataatattaacagcta
tacttctcacagaatctttgagaatgaaatacttaggagtatattttatt
aagttcattatcaccaatgttgaggcaataactggaagtccaggctacat
agagtaaaggagaaggcagcttctatcacttcagtactcctgtacacaat
aaaatgatttatgctagactttctttcagtgaaagatttatttttccatg
tactaagaaagcactccttagctagtcaccacactttaggctttcccaca
atgcatacaattatctaacttaacctatttttggtcaagccttatccagt
gactgattaatgaaaatgaaggaaactgtgcaattgtccaattaacaaaa
gcactgaagacctacttcagctctataggtccccacacagttgcttcaga
gtgttattggtctgcatcgtggcctggttattctcttgtagacttttcct
tccttccacctataccttgataatccatctgtatcataaaccaaggaact
gtgtaaagtttgctatagggatattccatctgatgagaatggtggcccca
atgatgtggacagttggtgtacagcaccaataaaagaatttgatctttag
tggagatagagttgttattcctgccaggctagtttgcagaagcaatgaga
ttacaatgagattgggaattccacaattagtcactgaaaatacatttcag
aatctatgtaaaaatatggccaaaggtagcccattgaatgagattggaca
ttctgaatcttgatggacccatccagcctatccaataatttttccaccct
ttaaatgatttaattcacctcttgcatcctggatggcagccacattatcg
ttccttcagtcctccattacacccccattccccatctccccctctgccct


gaattcagagtgaagatatggaatacagagagtgctggagaaagaaccct
ataataggagactagtttttacaaagttattaaatgccttgatcattaaa
tatgttctaagtactggtaacattaattttcagaccaaataaaggttttg
ccatctctctgagcgtcaagcctgtcagaagctatatttaaatgtccatg
ggtctgaaacatttttctgctcatggggagagtatgaaaaaaaatacaaa
tttatgcagaaatgcatctgctctttacacatcctctacacactgttaga
caaaagtaatgattatctcaaacatttaaaaccttttctgaaatgaacag
atgccaatactctgaaaatctcaacaaaaattaaatgttcacatatataa
aactaaagatgaagttccatatgtataactatgtttatatttctaaattt
aaacccacacacatataaatatatacatacatacatacatacatatatac
atacataaagtatactcatataattgtacttatgcactcaacaaacatat
gtctataacttaaagcaactttcaggtttctagtgtgggagacaaccaca
tatattcaatttataggatttcaaatctcaaatctttggggctataacta
tagtgccaattttgtacagaaagcaccagagaaaagaatcagaatgttta
tatatcctttaaaatggagtacaaatcagattgaacccgtaaaattaata
tgctactattagaactgcagttttccttaacaatgaaagaaattcaattt
ccacctagcaatgaaagcttacacagcggagggaaaaatagtagactcaa
aattaatagcatggaagttattcttctttcttatgtattttattgtgtga
aaattacatgtcaccattgtcatttttaaaaattgtttcacttttggaaa
gaataatcgatatttataatctaggggtggctaaataaatatagggaaaa
ttattgtcatttgggtttaaaaaggcaaaaatcataataaattatatttt
aatggaggaaaaattctttggattagtattttctttgcaataaatatccc
tttatacttggtgagaagaggatggtctttacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_45281790_45282970
seq2: B6Ng01-192I02.b_45_1244

seq1  GAATTCCTCTGTAATAAAATTAAACATTAAATGAATAGATTAATGATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTAATAAAATTAAACATTAAATGAATAGATTAATGATGTG  50

seq1  GTTAGAGAAGTTGGTTGTACTTATAAGTGATAAACGATTATTTTTAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGAAGTTGGTTGTACTTATAAGTGATAAACGATTATTTTTAAGCA  100

seq1  TAAATAGAAAATTAGATATAAATTCTAATATAATTCAGATAGGTCAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAAATTAGATATAAATTCTAATATAATTCAGATAGGTCAAAAA  150

seq1  GAAAATCTCAGAAGGAAACTTCCAATATCTATTAATGTATATTCAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCAGAAGGAAACTTCCAATATCTATTAATGTATATTCAGGCAT  200

seq1  ATTAAATGGTTGTTATTACTATTTTCTGTAACCAATAGTAGCAATAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGGTTGTTATTACTATTTTCTGTAACCAATAGTAGCAATAGAAT  250

seq1  TAGCAAAGCAAGACATTATAAAAAAACACTGTTTATAATATTAACAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGCAAGACATTATAAAAAAACACTGTTTATAATATTAACAGCTA  300

seq1  TACTTCTCACAGAATCTTTGAGAATGAAATACTTAGGAGTATATTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCACAGAATCTTTGAGAATGAAATACTTAGGAGTATATTTTATT  350

seq1  AAGTTCATTATCACCAATGTTGAGGCAATAACTGGAAGTCCAGGCTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATTATCACCAATGTTGAGGCAATAACTGGAAGTCCAGGCTACAT  400

seq1  AGAGTAAAGGAGAAGGCAGCTTCTATCACTTCAGTACTCCTGTACACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGGAGAAGGCAGCTTCTATCACTTCAGTACTCCTGTACACAAT  450

seq1  AAAATGATTTATGCTAGACTTTCTTTCAGTGAAAGATTTATTTTTCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTTATGCTAGACTTTCTTTCAGTGAAAGATTTATTTTTCCATG  500

seq1  TACTAAGAAAGCACTCCTTAGCTAGTCACCACACTTTAGGCTTTCCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGAAAGCACTCCTTAGCTAGTCACCACACTTTAGGCTTTCCCACA  550

seq1  ATGCATACAATTATCTAACTTAACCTATTTTTGGTCAAGCCTTATCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACAATTATCTAACTTAACCTATTTTTGGTCAAGCCTTATCCAGT  600

seq1  GACTGATTAATGAAAATGAAGGAAACTGTGCAATTGTCCAATTAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTAATGAAAATGAAGGAAACTGTGCAATTGTCCAATTAACAAAA  650

seq1  GCACTGAAGACCTACTTCAGCTCTATAGGTCCCCACACAGTTGCTTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAAGACCTACTTCAGCTCTATAGGTCCCCACACAGTTGCTTCAGA  700

seq1  GTGTTATTGGTCTGCATCGTGGCCTGGTTATTCTCTTGTAGAC-TTTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTTATTGGTCTGCATCGTGGCCTGGTTATTCTCTTGTAGACTTTTCCT  750

seq1  TCCTTCCACCTATACCTTGATAATCCATCTGTATCATAAACCAAGGAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCACCTATACCTTGATAATCCATCTGTATCATAAACCAAGGAACT  800

seq1  GTGTAAAGTTTGCTATAGGGATATTCCATCTGATGAGAATGGTGGCCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGTAAAGTTTGCTATAGGGATATTCCATCTGATGAGAATGGTGGCCCC-  849

seq1  AATGATGTGGACAG-TGGTGTACAGCACCAAT-AAAGAATTTGATC-TTA  896
      |||||||||||||| ||||||||||||||||| ||||||||||||| |||
seq2  AATGATGTGGACAGTTGGTGTACAGCACCAATAAAAGAATTTGATCTTTA  899

seq1  GTGGAGATAGAGTTGTTAATCCTGCCAGGCTAGTTTGCAGAAGCAATGAG  946
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGAGATAGAGTTGTTATTCCTGCCAGGCTAGTTTGCAGAAGCAATGAG  949

seq1  A-TAC-ATGAGATT-GGAATT-CACAATTAGTCACTTGAAAAACA-TTCA  991
      | ||| |||||||| |||||| ||||||||||||||  ||| ||| ||||
seq2  ATTACAATGAGATTGGGAATTCCACAATTAGTCACTGAAAATACATTTCA  999

seq1  GAAACTATG-AAAAATATGAC--AAAGTAGCCAAT--GATGAGATTGGAC  1036
      ||| ||||| ||||||||| |  || |||||| ||   ||||||||||||
seq2  GAATCTATGTAAAAATATGGCCAAAGGTAGCCCATTGAATGAGATTGGAC  1049

seq1  AATCTGAAATTTGAT-GAACCATCCAGCCTATTC-ATAATTTTTC--ACC  1082
      | ||||||  ||||| || ||||||||||||| | ||||||||||   ||
seq2  ATTCTGAATCTTGATGGACCCATCCAGCCTATCCAATAATTTTTCCACCC  1099

seq1  TTTAATTGATTT-ATTCA-CTC-TGCATCCT-GATGGCAGCCACATTTAT  1128
      ||||| |||||| ||||| ||| |||||||| ||||||||||||| ||||
seq2  TTTAAATGATTTAATTCACCTCTTGCATCCTGGATGGCAGCCACA-TTAT  1148

seq1  TCCTCTCCTCTCAGTCCCTCCTTTACACCCCC-TTCCCCA-CT-CCCCTC  1175
        |  |||| ||||| ||||| |||||||||| ||||||| || ||||||
seq2  --CGTTCCT-TCAGT-CCTCCATTACACCCCCATTCCCCATCTCCCCCTC  1194

seq1  TGCCCT  1181
      ||||||
seq2  TGCCCT  1200


seq1: chr15_45424868_45425976
seq2: B6Ng01-192I02.g_68_1200 (reverse)

seq1  CGTAAA-ACCAT-CTCTTCTCA-CAATTATAAAGGAATA-TTATTGCAAG  46
      |||||| ||||| ||||||||| ||| |||||||| ||| ||||||||| 
seq2  CGTAAAGACCATCCTCTTCTCACCAAGTATAAAGGGATATTTATTGCAAA  50

seq1  GAAAATTACTAAT-CAAAG-ATTTTTCCTCCA-TAAAATATAA-TTATTA  92
      ||||| ||||||| ||||| |||||||||||| |||||||||| ||||||
seq2  GAAAA-TACTAATCCAAAGAATTTTTCCTCCATTAAAATATAATTTATTA  99

seq1  TGATTTTTGC--TTTTAAACC--AATGACATTA--TTTTCCTATATTTAT  136
      ||||||||||  |||||||||  ||||||| ||  ||| |||||||||||
seq2  TGATTTTTGCCTTTTTAAACCCAAATGACAATAATTTTCCCTATATTTAT  149

seq1  TTAGC--ACCCTAGATTAT-AATATCGA-TATTCTTT-CAAAAGTG-AAC  180
      |||||   ||||||||||| |||||||| |||||||| |||||||| |||
seq2  TTAGCCACCCCTAGATTATAAATATCGATTATTCTTTCCAAAAGTGAAAC  199

seq1  A--TTTTTAAAATGACAATGGTGACATGTAATTTTCACACAAT-AAATAC  227
      |  |||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTTTTAAAAATGACAATGGTGACATGTAATTTTCACACAATAAAATAC  249

seq1  ATAAG-AAGAAGAATAACTTCCATGCTATTAATTTTGAGTCTACTATTTT  276
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGAAGAATAACTTCCATGCTATTAATTTTGAGTCTACTATTTT  299

seq1  TCCCTCCGCTGTGTAAGCTTTCATTGCTAGGTGG-AATTGAATTTCTTTC  325
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCCTCCGCTGTGTAAGCTTTCATTGCTAGGTGGAAATTGAATTTCTTTC  349

seq1  ATTGTTAAGGAAAACTGCAGTTCTAATAGTAGCATATTAATTTTACGGGT  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAGGAAAACTGCAGTTCTAATAGTAGCATATTAATTTTACGGGT  399

seq1  TCAATCTGATTTGTACTCCATTTTAAAGGATATATAAACATTCTGATTCT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGATTTGTACTCCATTTTAAAGGATATATAAACATTCTGATTCT  449

seq1  TTTCTCTGGTGCTTTCTGTACAAAATTGGCACTATAGTTATAGCCCCAAA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGGTGCTTTCTGTACAAAATTGGCACTATAGTTATAGCCCCAAA  499

seq1  GATTTGAGATTTGAAATCCTATAAATTGAATATATGTGGTTGTCTCCCAC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGATTTGAAATCCTATAAATTGAATATATGTGGTTGTCTCCCAC  549

seq1  ACTAGAAACCTGAAAGTTGCTTTAAGTTATAGACATATGTTTGTTGAGTG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAACCTGAAAGTTGCTTTAAGTTATAGACATATGTTTGTTGAGTG  599

seq1  CATAAGTACAATTATATGAGTATACTTTATGTATGTATATATGTATGTAT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTACAATTATATGAGTATACTTTATGTATGTATATATGTATGTAT  649

seq1  GTATGTATGTATATATTTATATGTGTGTGGGTTTAAATTTAGAAATATAA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTATATATTTATATGTGTGTGGGTTTAAATTTAGAAATATAA  699

seq1  ACATAGTTATACATATGGAACTTCATCTTTAGTTTTATATATGTGAACAT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTATACATATGGAACTTCATCTTTAGTTTTATATATGTGAACAT  749

seq1  TTAATTTTTGTTGAGATTTTCAGAGTATTGGCATCTGTTCATTTCAGAAA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGTTGAGATTTTCAGAGTATTGGCATCTGTTCATTTCAGAAA  799

seq1  AGGTTTTAAATGTTTGAGATAATCATTACTTTTGTCTAACAGTGTGTAGA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTAAATGTTTGAGATAATCATTACTTTTGTCTAACAGTGTGTAGA  849

seq1  GGATGTGTAAAGAGCAGATGCATTTCTGCATAAATTTGTATTTTTTTTCA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTAAAGAGCAGATGCATTTCTGCATAAATTTGTATTTTTTTTCA  899

seq1  TACTCTCCCCATGAGCAGAAAAATGTTTCAGACCCATGGACATTTAAATA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCCCCATGAGCAGAAAAATGTTTCAGACCCATGGACATTTAAATA  949

seq1  TAGCTTCTGACAGGCTTGACGCTCAGAGAGATGGCAAAACCTTTATTTGG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTGACAGGCTTGACGCTCAGAGAGATGGCAAAACCTTTATTTGG  999

seq1  TCTGAAAATTAATGTTACCAGTACTTAGAACATATTTAATGATCAAGGCA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATTAATGTTACCAGTACTTAGAACATATTTAATGATCAAGGCA  1049

seq1  TTTAATAACTTTGTAAAAACTAGTCTCCTATTATAGGGTTCTTTCTCCAG  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAACTTTGTAAAAACTAGTCTCCTATTATAGGGTTCTTTCTCCAG  1099

seq1  CACTCTCTGTATTCCATATCTTCACTCTGAATTC  1109
      ||||||||||||||||||||||||||||||||||
seq2  CACTCTCTGTATTCCATATCTTCACTCTGAATTC  1133


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