BAC Information

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BAC

Clone NameB6Ng01-193L17
Chromosome15 (Build37)
Map Location 31,210,838 - 31,295,355
singlet/doubletdoublet
Overlap gene5730557B15Rik
Upstream geneCtnnd2, 9630009A06Rik, Dap, EG625796
Downstream geneRopn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik, Sema5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193L17.bB6Ng01-193L17.g
ACCGA016619GA016620
length1,122834
definitionB6Ng01-193L17.b B6Ng01-193L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,210,838 - 31,211,971)(31,294,496 - 31,295,355)
sequence
gaattcaccactcaagttcacctgggtcccagaggatttcggatctgttt
ccctctgacctcactgaggtgtctgcaagcctttgcagcactctgtctag
cgttggctgtgctcttccaaagaggccatctgaaattcaattaaggacac
tcgtgacaagagaaaatacgtttccctcttcctccccccttatcctaaat
attatgataaatccaactgccgtgctttaaaaaaaaaatccaatttgtca
actggaaaaaacccagcaccatctgatataatgaagtcctataatcagga
ggatttgggactctgctcagaagccctaaatgagattttttattacattt
cagcattgtcgttatgactgttgcaggccacttgaaagagacaggccagc
attctaaagctgttgcttgcaagtcacaagaacccttcatggtcacttcc
agagacattcttgggattgtggaatgaatttaaagaatcaataaggacac
tcattatccctagagcaatggttgtcacccgggagtgatatcctacagga
gacaatttttgttgttaaaactggaaagctgtgggaggagctcattggta
gcatctggtgggtagagaccatgaatagatgggcatccatcccctcacac
gaagagcggccccactcaaaaggtcagcagtgcgcagaccattgaaatcc
taagagcctgtcctgtcctagaagcctctggcttataataatgtaaccaa
acactcaaaggcaatttcccattaatcaggaatcttgaaaacacataatc
cacgtttctgtgatgaaggcacgtttcctgggaaagcggctgccatagcc
tgtgctcctgcgcctcctcggtccctgaagccctgcagagcaaattgccc
atgatgcagattcgctcctggatgcgtgagatagagcaaatctcttcctt
cggggagagcgtgcggcgagctacagtgtacggttgtttcctccgatgct
gatacaaggagacagagataacattcccttggtgccttcccagccaactc
acagaaggcaagcagaacaagcttacaggctggactcagctaataatttc
tctagagagcttagaaactctt
gaattccagaacccctgggaagcccctcccaggccctgaggctctggagg
acaggtagcagcctccctctgctcttgtttgtcttctgtgtagctcacct
gaaacgacagtccctgctgtgtggtttgtgggcctgaaacaccgtcctgc
cccagagtctggagaagtcccgtacatatgaccatcgcttactgtctgtc
tcctcatttctctaatttgttgtgaagagattatagtctgatcttgcacc
caagctttctcttgctgtttttctcttcccttgattgtgaagatagagtc
tgaagggcctttgttgttctgctttgagtctctacctctttgcacccatc
agatgtccctggggacccctgagggaagagtcctgcctcggcttttttat
ctctgggtcccagggccaggcctgtgttctgtgtgtcctgcggggactta
gggagtgaggtggtatgtggcagaagacattctggtcaggcaggtgggga
accaagggatggtggcaggtggggaatggtttgattgtgacctggagtgg
agaggagggcccgggggagctaaggctagagaggtccactcaggccaggt
gacactgtctctagctgggaattgggagtaaaggagtgtcagttggtcag
tgccagtctgtagttcttcagtatgtcttccgatgactgtcttccatggc
tggcttttttcaccacctggaggttttctgttttaaggatactttctctc
gggaggcctttctaccatctcccatctaagcccagagctggctaaagggt
agtccatctgttgagtctggggtggggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_31210838_31211971
seq2: B6Ng01-193L17.b_47_1168

seq1  GAATTCACCACTCAAGTTCACCTGGGTCCCAGAGGATTTCGGATCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACTCAAGTTCACCTGGGTCCCAGAGGATTTCGGATCTGTTT  50

seq1  CCCTCTGACCTCACTGAGGTGTCTGCAAGCCTTTGCAGCACTCTGTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGACCTCACTGAGGTGTCTGCAAGCCTTTGCAGCACTCTGTCTAG  100

seq1  CGTTGGCTGTGCTCTTCCAAAGAGGCCATCTGAAATTCAATTAAGGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGCTGTGCTCTTCCAAAGAGGCCATCTGAAATTCAATTAAGGACAC  150

seq1  TCGTGACAAGAGAAAATACGTTTCCCTCTTCCTCCCCCCTTATCCTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGACAAGAGAAAATACGTTTCCCTCTTCCTCCCCCCTTATCCTAAAT  200

seq1  ATTATGATAAATCCAACTGCCGTGCTTTAAAAAAAAAATCCAATTTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATAAATCCAACTGCCGTGCTTTAAAAAAAAAATCCAATTTGTCA  250

seq1  ACTGGAAAAAACCCAGCACCATCTGATATAATGAAGTCCTATAATCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAAAACCCAGCACCATCTGATATAATGAAGTCCTATAATCAGGA  300

seq1  GGATTTGGGACTCTGCTCAGAAGCCCTAAATGAGATTTTTTATTACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGGACTCTGCTCAGAAGCCCTAAATGAGATTTTTTATTACATTT  350

seq1  CAGCATTGTCGTTATGACTGTTGCAGGCCACTTGAAAGAGACAGGCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGTCGTTATGACTGTTGCAGGCCACTTGAAAGAGACAGGCCAGC  400

seq1  ATTCTAAAGCTGTTGCTTGCAAGTCACAAGAACCCTTCATGGTCACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGCTGTTGCTTGCAAGTCACAAGAACCCTTCATGGTCACTTCC  450

seq1  AGAGACATTCTTGGGATTGTGGAATGAATTTAAAGAATCAATAAGGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATTCTTGGGATTGTGGAATGAATTTAAAGAATCAATAAGGACAC  500

seq1  TCATTATCCCTAGAGCAATGGTTGTCACCCGGGAGTGATATCCTACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCCCTAGAGCAATGGTTGTCACCCGGGAGTGATATCCTACAGGA  550

seq1  GACAATTTTTGTTGTTAAAACTGGAAAGCTGTGGGAGGAGCTCATTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTTTGTTGTTAAAACTGGAAAGCTGTGGGAGGAGCTCATTGGTA  600

seq1  GCATCTGGTGGGTAGAGACCATGAATAGATGGGCATCCATCCCCTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGTGGGTAGAGACCATGAATAGATGGGCATCCATCCCCTCACAC  650

seq1  GAAGAGCGGCCCCACTCAAAAGGTCAGCAGTGCGCAGACCATTGAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCGGCCCCACTCAAAAGGTCAGCAGTGCGCAGACCATTGAAATCC  700

seq1  TAAGAGCCTGTCCTGTCCTAGAAGCCTCTGGCTTATAATAATGTAACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCTGTCCTGTCCTAGAAGCCTCTGGCTTATAATAATGTAACCAA  750

seq1  ACACTCAAAGGCAATTTCCCATTAATCAGGAATCTTGAAAACACATAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAAAGGCAATTTCCCATTAATCAGGAATCTTGAAAACACATAATC  800

seq1  CACGTTTCTGTGATGAAGGCACGTTTCCTGGGAAAGCGGCTGCCATAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTCTGTGATGAAGGCACGTTTCCTGGGAAAGCGGCTGCCATAGCC  850

seq1  TGTGCTCCTGCGCCTCCTCGGTCCCTGAAGCCCTGCAGAGCAAATTG-CC  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGCTCCTGCGCCTCCTCGGTCCCTGAAGCCCTGCAGAGCAAATTGCCC  900

seq1  ATGATGCAGATTCGCTCCTGGATGCGTGAGATAGAGCAAATCTCTTCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAGATTCGCTCCTGGATGCGTGAGATAGAGCAAATCTCTTCCTT  950

seq1  CGGGGAGAGCGTGCGGCGGAGCTACAGTGTAACGGTTGTTTTCTCCGATG  999
      ||||||||||||||||| |||||||||||| |||||||||| ||||||||
seq2  CGGGGAGAGCGTGCGGC-GAGCTACAGTGT-ACGGTTGTTTCCTCCGATG  998

seq1  CTGATACAAAGAAGAACAGAGATAAACATCCCCTGGTGGCTTCCCCAGCC  1049
      ||||||||| ||   ||||||||||   |||| ||||| ||| |||||||
seq2  CTGATACAAGGA--GACAGAGATAACATTCCCTTGGTGCCTT-CCCAGCC  1045

seq1  AACTCACAGAGGGCAGGCAGGACAAGCTTACAGGCTTTGGGCTCAGCTAT  1099
      |||||||||| |||| |||| ||||||||||||||  ||| |||||||| 
seq2  AACTCACAGAAGGCAAGCAGAACAAGCTTACAGGC--TGGACTCAGCTA-  1092

seq1  TTAAATTTTCTCTAAGAGAGGTCTAGAAACCTCTT  1134
        | | ||||||| |||||| | |||||| |||||
seq2  --ATAATTTCTCT-AGAGAGCT-TAGAAA-CTCTT  1122

seq1: chr15_31294496_31295355
seq2: B6Ng01-193L17.g_67_900 (reverse)

seq1  ACCCCCAACCCACCCCCACCCCCACCCCCACCCCCACCCCCACCCCAGAC  50
                                   |||||| ||||||||||||||
seq2  -----------------------------ACCCCC-CCCCCACCCCAGAC  20

seq1  TCAACAGATGGACTACCC-TTAGCCAGCTCTGGGCTTAGATGGGAGATGG  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAACAGATGGACTACCCTTTAGCCAGCTCTGGGCTTAGATGGGAGATGG  70

seq1  TAGAAAGGCCT-CCGAGAGAAAGTATCCTTAAAACAG-AAACCTCCAGGT  147
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TAGAAAGGCCTCCCGAGAGAAAGTATCCTTAAAACAGAAAACCTCCAGGT  120

seq1  GGTG-AAAAAGCCAGCCATGGAAGACAGTCATCGGAAGACATACTGAAGA  196
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAAAGCCAGCCATGGAAGACAGTCATCGGAAGACATACTGAAGA  170

seq1  ACTACAGACTGGCACTGACCAACTGACACTCCTTTACTCCCAATTCCCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGACTGGCACTGACCAACTGACACTCCTTTACTCCCAATTCCCAG  220

seq1  CTAGAGACAGTGTCACCTGGCCTGAGTGGACCTCTCTAGCCTTAGCTCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACAGTGTCACCTGGCCTGAGTGGACCTCTCTAGCCTTAGCTCCC  270

seq1  CCGGGCCCTCCTCTCCACTCCAGGTCACAATCAAACCATTCCCCACCTGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCCCTCCTCTCCACTCCAGGTCACAATCAAACCATTCCCCACCTGC  320

seq1  CACCATCCCTTGGTTCCCCACCTGCCTGACCAGAATGTCTTCTGCCACAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCCTTGGTTCCCCACCTGCCTGACCAGAATGTCTTCTGCCACAT  370

seq1  ACCACCTCACTCCCTAAGTCCCCGCAGGACACACAGAACACAGGCCTGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTCACTCCCTAAGTCCCCGCAGGACACACAGAACACAGGCCTGGC  420

seq1  CCTGGGACCCAGAGATAAAAAAGCCGAGGCAGGACTCTTCCCTCAGGGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACCCAGAGATAAAAAAGCCGAGGCAGGACTCTTCCCTCAGGGGT  470

seq1  CCCCAGGGACATCTGATGGGTGCAAAGAGGTAGAGACTCAAAGCAGAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGACATCTGATGGGTGCAAAGAGGTAGAGACTCAAAGCAGAACA  520

seq1  ACAAAGGCCCTTCAGACTCTATCTTCACAATCAAGGGAAGAGAAAAACAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCCCTTCAGACTCTATCTTCACAATCAAGGGAAGAGAAAAACAG  570

seq1  CAAGAGAAAGCTTGGGTGCAAGATCAGACTATAATCTCTTCACAACAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAAGCTTGGGTGCAAGATCAGACTATAATCTCTTCACAACAAAT  620

seq1  TAGAGAAATGAGGAGACAGACAGTAAGCGATGGTCATATGTACGGGACTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATGAGGAGACAGACAGTAAGCGATGGTCATATGTACGGGACTT  670

seq1  CTCCAGACTCTGGGGCAGGACGGTGTTTCAGGCCCACAAACCACACAGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTCTGGGGCAGGACGGTGTTTCAGGCCCACAAACCACACAGCA  720

seq1  GGGACTGTCGTTTCAGGTGAGCTACACAGAAGACAAACAAGAGCAGAGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTCGTTTCAGGTGAGCTACACAGAAGACAAACAAGAGCAGAGGG  770

seq1  AGGCTGCTACCTGTCCTCCAGAGCCTCAGGGCCTGGGAGGGGCTTCCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTACCTGTCCTCCAGAGCCTCAGGGCCTGGGAGGGGCTTCCCAG  820

seq1  GGGTTCTGGAATTC  860
      ||||||||||||||
seq2  GGGTTCTGGAATTC  834