BAC Information

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BAC

Clone NameB6Ng01-194F07
Chromosome15 (Build37)
Map Location 3,402,873 - 3,403,985
singlet/doubletsinglet
Overlap geneGhr
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139
Downstream geneLOC223278, Fbxo4, AW549877, LOC100039196, Oxct1, Plcxd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194F07.bB6Ng01-194F07.g
ACCGA017055GA017056
length1,1031,201
definitionB6Ng01-194F07.b B6Ng01-194F07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttattccatccttaagaaggggcaacattgtttcatctttaga
aggctttaccagctcgatttttccactggctgtatgtagaatattgcttg
ctgaaaaatgaccacaaaggtttggtgcgtataggagtgcccactataaa
gtatgccatctatctttatatagcatgcagtcagcaactcagcttctcct
tgggcctcagcagcctcaggaagaagcaaaccaatccgtgatgtgcagag
aagttcagtctggctaggacaggaagagctcctggaagtgatggagggcc
tgactctttaatgtctgcctctcatgatgaaggcaaatcatcaagactcc
ctgaacagagtaactcaaagtgaacgtggaatcattaattcaccaaggtc
actgtgtgcacatgtcttcagtgcttcctatttttaaaacttaaatctag
gagtcatgaggaatacaagaaatatcttcaataagttatcttgacattag
gtaagtatagtgagaggatcgggctctgtacatgaactgtggcgatggcc
catatcacactacataggagtagcactgaacatagaaaactgttcattca
attaccaaatgatacaatgttcaatgaatggcatgcaatgttcagtgaat
ggcatgcaaggagtagttccattctatgcatttaaaaatcaacaaatatc
tactgagcatttacagacaagaaaggtgtctttggcagagctcactgcac
atgagcactttgtttctcttggaaacagacttaaggaagttgatttcagt
agaattataccgtctccagatggcaaaaggatccacaggcaaagacggga
cttgtctggcctcgaaaaactgacaatttatggaaaggaagaaaaagtat
gtgccaaatccatcaaataataatattttctcaaagctgtaagcaggcca
gtcaaaacaaaagtgctaaacacaggatggaacattattttatacatttt
agtatttacagagagcatatatactgttagtatatatttatatataagta
tatatatatatatattaatatatttatatataacctattgatatactata
ggc
gaattctcacctgaggaataccgaatggcagagaagcacctgataaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tcaacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggta
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatctggcaaggatgtggagaaag
aggaacactcctccattgttggtaggattgcaggcttgtacaaccactct
ggaaatcagtctggtggttcctcagaaaattggacatagtactaccggag
gatccagcaatacctctcctgggcatatatccagaagacgtcccaaccgg
taagaaggacatatgctccactatgttcatagcagccttatttataatag
ccagaagctggaaagaacccagatgcccctcaacagaggaatgaatacag
aaaatgtggtacatttacacaacggagtactactcagctattaaaaagaa
tgaatttatgaaattcctagccaaatgaatggacctggagggcatcatcc
tgagtgaggtaacacattcacaaaggaactcacacaatacgtactcactg
ataagtggatattagcccaaaacctaggatacccaagatataagatacaa
tttgctaaacacatgaaactcaagaagaatgaagactgaagtgtggacac
tttgccccttcttagaattgggaacaaaacacccatggaaggagttacag
agacaaagattggagctgagaggaaagggatggaccatctagagactgcc
atatccagggatccaccccataatcagcttccaaacactgacaccattgc
atacactagcaagattttattgaaaggactcagatgtagctgtctctgtg
agactatgctggggctagcaaacacataagtggatgctcacagtcagcta
tgatgatcacaggctccaatgagagctaggagagtaccagagctgacggt
ctgcaacctatagtgaacacaattgactaatcagtaccgactgttcctag
ctgctatgatcaaagatggcctatgatgcggccacatactcactgggatg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_3402873_3403985
seq2: B6Ng01-194F07.b_47_1149 (reverse)

seq1  GCCTATAGTTATTATTAATAGGTTATAATATATATATATATATATATATA  50
      |||||||||   ||| ||||||||   ||||||| ||||||  |||||||
seq2  GCCTATAGT--ATATCAATAGGTT---ATATATAAATATATTAATATATA  45

seq1  TATATATATAAACTTTATATATAAATATTATACCTAAACAGTATATATGC  100
      ||||||||||    ||||||||||||| |||||   ||||||||||||||
seq2  TATATATATA---CTTATATATAAATA-TATAC--TAACAGTATATATGC  89

seq1  TCTCTGTAAATACTAAAAATGTAT-AAATAATGTTCCATCCTGTGTTTAG  149
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TCTCTGTAAATACT-AAAATGTATAAAATAATGTTCCATCCTGTGTTTAG  138

seq1  CACTTTTGTTTTGACTGGCCTGCTTACAGCTTTGAG-AAATATTATTATT  198
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTTTTGTTTTGACTGGCCTGCTTACAGCTTTGAGAAAATATTATTATT  188

seq1  TGATGGATTTGGCACATACTTTTTCTTCCTTTCCATAAATTGTCAGTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATTTGGCACATACTTTTTCTTCCTTTCCATAAATTGTCAGTTTT  238

seq1  TCGAGGCCAGACAAGTCCCGTCTTTGCCTGTGGATCCTTTTGCCATCTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGACAAGTCCCGTCTTTGCCTGTGGATCCTTTTGCCATCTGG  288

seq1  AGACGGTATAATTCTACTGAAATCAACTTCCTTAAGTCTGTTTCCAAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGTATAATTCTACTGAAATCAACTTCCTTAAGTCTGTTTCCAAGAG  338

seq1  AAACAAAGTGCTCATGTGCAGTGAGCTCTGCCAAAGACACCTTTCTTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTGCTCATGTGCAGTGAGCTCTGCCAAAGACACCTTTCTTGTC  388

seq1  TGTAAATGCTCAGTAGATATTTGTTGATTTTTAAATGCATAGAATGGAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCTCAGTAGATATTTGTTGATTTTTAAATGCATAGAATGGAAC  438

seq1  TACTCCTTGCATGCCATTCACTGAACATTGCATGCCATTCATTGAACATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTTGCATGCCATTCACTGAACATTGCATGCCATTCATTGAACATT  488

seq1  GTATCATTTGGTAATTGAATGAACAGTTTTCTATGTTCAGTGCTACTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATTTGGTAATTGAATGAACAGTTTTCTATGTTCAGTGCTACTCCT  538

seq1  ATGTAGTGTGATATGGGCCATCGCCACAGTTCATGTACAGAGCCCGATCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGTGATATGGGCCATCGCCACAGTTCATGTACAGAGCCCGATCC  588

seq1  TCTCACTATACTTACCTAATGTCAAGATAACTTATTGAAGATATTTCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATACTTACCTAATGTCAAGATAACTTATTGAAGATATTTCTTG  638

seq1  TATTCCTCATGACTCCTAGATTTAAGTTTTAAAAATAGGAAGCACTGAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCATGACTCCTAGATTTAAGTTTTAAAAATAGGAAGCACTGAAG  688

seq1  ACATGTGCACACAGTGACCTTGGTGAATTAATGATTCCACGTTCACTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCACACAGTGACCTTGGTGAATTAATGATTCCACGTTCACTTTG  738

seq1  AGTTACTCTGTTCAGGGAGTCTTGATGATTTGCCTTCATCATGAGAGGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTGTTCAGGGAGTCTTGATGATTTGCCTTCATCATGAGAGGCA  788

seq1  GACATTAAAGAGTCAGGCCCTCCATCACTTCCAGGAGCTCTTCCTGTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAAAGAGTCAGGCCCTCCATCACTTCCAGGAGCTCTTCCTGTCCT  838

seq1  AGCCAGACTGAACTTCTCTGCACATCACGGATTGGTTTGCTTCTTCCTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACTGAACTTCTCTGCACATCACGGATTGGTTTGCTTCTTCCTGA  888

seq1  GGCTGCTGAGGCCCAAGGAGAAGCTGAGTTGCTGACTGCATGCTATATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGAGGCCCAAGGAGAAGCTGAGTTGCTGACTGCATGCTATATAA  938

seq1  AGATAGATGGCATACTTTATAGTGGGCACTCCTATACGCACCAAACCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATGGCATACTTTATAGTGGGCACTCCTATACGCACCAAACCTTT  988

seq1  GTGGTCATTTTTCAGCAAGCAATATTCTACATACAGCCAGTGGAAAAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATTTTTCAGCAAGCAATATTCTACATACAGCCAGTGGAAAAATC  1038

seq1  GAGCTGGTAAAGCCTTCTAAAGATGAAACAATGTTGCCCCTTCTTAAGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGTAAAGCCTTCTAAAGATGAAACAATGTTGCCCCTTCTTAAGGA  1088

seq1  TGGAATAAGGAATTC  1113
      |||||||||||||||
seq2  TGGAATAAGGAATTC  1103