BAC Information

Click to search

BAC

Clone NameB6Ng01-194J17
Chromosome15 (Build37)
Map Location 101,319,865 - 101,456,492
singlet/doubletdoublet
Overlap geneKrt85, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223
Upstream geneBC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt83, 1700011A15Rik, 5430421N21Rik
Downstream geneEG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194J17.bB6Ng01-194J17.g
ACCGA017254GA017255
length989428
definitionB6Ng01-194J17.b B6Ng01-194J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,455,510 - 101,456,492)(101,319,865 - 101,320,298)
sequence
gaattcctgaccctgaagaaggtgagctggctaattacagagatgggttt
ctctgccaaaggacagaaatggccttgtatgtctgggtcattccagagaa
atggaggcgtggagacagagatgaatggtttgggcaagagagttaacctg
atgcaatgttgttaatggtttcttcaggatgcagatgctgctttcatgat
cgagaatgaacttacagccaaggtccacagtttgatagatgagatcaact
tcttgaggactttatttgatgctgtaaacagttcttgtcccatttctccc
tctctaccctacccattccctttatttaatcctgtgcagagtgctgggaa
cctctgtgatccacagagacagaaatgctctttgtgttctgtaggaaatg
tctcagatgcaaactcctctctcagacacatctgtgattatctccatgga
caacaaccacagcttggacatggagagcatcattgctgaggtcaagacac
aatatgagaacattgcaaagaaaagtcaggctgaggctgagtcttggtac
cagactaaagtgagtattggggtggaggctgatgaggatgcctgggaccc
accctgaactccatgagtctctgagttcagtattggaggcccactaaaag
aaattgggatgttgtcccagaaaatgcactgtgcacatgtaccatagaat
aatgttttattcgaagagcaaaagaacacagaggtagatgcaaagttgct
attaatcggttccatagctctctttgcttgagctgtactctgaacaatgg
tcctcttgagaaactagagaacattttcacttcctgagggaactatggag
tctgtggtctcctaaagcttctcttgaggaaaagccagcacatccatggg
aagtgtgtgccaccttagaggtgggtttgcttctagcattgtacaaactc
acaatagattgtcctctctttgattggccttcagtatga
tgtgcctgaaggaagacagggagagggctccttgattgataaggcagggc
tgggcttcctgacttaggcaggcagagaccccaagcacaagccagcttgt
ctatacccagggagctcctgtcaagactccccagtggccctcacctcttc
ttgtagccctccatggactcctgcgcatggttgagctcagcagccagcct
cccgctgtcggcctccacacactcagcctcccgcctcagcgtctcgatgt
agccctcgaacagaggctccatgttgctctcacagcacttgcggttctgg
tagaactgccacttggtctccagcagcttgttctgctgctccaggaagcg
cacctgccatgcagagttaacgtctgagaacatactcttgcagaatcaca
gggtaggtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101455510_101456492
seq2: B6Ng01-194J17.b_53_1041 (reverse)

seq1  TCATACTGAAGGCCAATCAAAGAGAGGAC-ATCTA-TGTGAGTTGTTAC-  47
      ||||||||||||||||||||||||||||| ||||| ||||||||  ||| 
seq2  TCATACTGAAGGCCAATCAAAGAGAGGACAATCTATTGTGAGTTTGTACA  50

seq1  ATGC-AGAAGCAAACCCACCTCTAA-GTGGCACACACTT-CCATGGATGT  94
      |||| |||||||||||||||||||| ||||||||||||| ||||||||||
seq2  ATGCTAGAAGCAAACCCACCTCTAAGGTGGCACACACTTCCCATGGATGT  100

seq1  GCTGGCTTTTCCTCAAGAGAAGCTTTAGGAGACCACAGACTCCATAGTTC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTTTCCTCAAGAGAAGCTTTAGGAGACCACAGACTCCATAGTTC  150

seq1  CCTCAGGAAGTGAAAATGTTCTCTAGTTTCTCAAGAGGACCATTGTTCAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAAGTGAAAATGTTCTCTAGTTTCTCAAGAGGACCATTGTTCAG  200

seq1  AGTACAGCTCAAGCAAAGAGAGCTATGGAACCGATTAATAGCAACTTTGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCTCAAGCAAAGAGAGCTATGGAACCGATTAATAGCAACTTTGC  250

seq1  ATCTACCTCTGTGTTCTTTTGCTCTTCGAATAAAACATTATTCTATGGTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTCTGTGTTCTTTTGCTCTTCGAATAAAACATTATTCTATGGTA  300

seq1  CATGTGCACAGTGCATTTTCTGGGACAACATCCCAATTTCTTTTAGTGGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCACAGTGCATTTTCTGGGACAACATCCCAATTTCTTTTAGTGGG  350

seq1  CCTCCAATACTGAACTCAGAGACTCATGGAGTTCAGGGTGGGTCCCAGGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATACTGAACTCAGAGACTCATGGAGTTCAGGGTGGGTCCCAGGC  400

seq1  ATCCTCATCAGCCTCCACCCCAATACTCACTTTAGTCTGGTACCAAGACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATCAGCCTCCACCCCAATACTCACTTTAGTCTGGTACCAAGACT  450

seq1  CAGCCTCAGCCTGACTTTTCTTTGCAATGTTCTCATATTGTGTCTTGACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGCCTGACTTTTCTTTGCAATGTTCTCATATTGTGTCTTGACC  500

seq1  TCAGCAATGATGCTCTCCATGTCCAAGCTGTGGTTGTTGTCCATGGAGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATGATGCTCTCCATGTCCAAGCTGTGGTTGTTGTCCATGGAGAT  550

seq1  AATCACAGATGTGTCTGAGAGAGGAGTTTGCATCTGAGACATTTCCTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGATGTGTCTGAGAGAGGAGTTTGCATCTGAGACATTTCCTACA  600

seq1  GAACACAAAGAGCATTTCTGTCTCTGTGGATCACAGAGGTTCCCAGCACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAAGAGCATTTCTGTCTCTGTGGATCACAGAGGTTCCCAGCACT  650

seq1  CTGCACAGGATTAAATAAAGGGAATGGGTAGGGTAGAGAGGGAGAAATGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGGATTAAATAAAGGGAATGGGTAGGGTAGAGAGGGAGAAATGG  700

seq1  GACAAGAACTGTTTACAGCATCAAATAAAGTCCTCAAGAAGTTGATCTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAACTGTTTACAGCATCAAATAAAGTCCTCAAGAAGTTGATCTCA  750

seq1  TCTATCAAACTGTGGACCTTGGCTGTAAGTTCATTCTCGATCATGAAAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAAACTGTGGACCTTGGCTGTAAGTTCATTCTCGATCATGAAAGC  800

seq1  AGCATCTGCATCCTGAAGAAACCATTAACAACATTGCATCAGGTTAACTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGCATCCTGAAGAAACCATTAACAACATTGCATCAGGTTAACTC  850

seq1  TCTTGCCCAAACCATTCATCTCTGTCTCCACGCCTCCATTTCTCTGGAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCAAACCATTCATCTCTGTCTCCACGCCTCCATTTCTCTGGAAT  900

seq1  GACCCAGACATACAAGGCCATTTCTGTCCTTTGGCAGAGAAACCCATCTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGACATACAAGGCCATTTCTGTCCTTTGGCAGAGAAACCCATCTC  950

seq1  TGTAATTAGCCAGCTCACCTTCTTCAGGGTCAGGAATTC  983
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAGCCAGCTCACCTTCTTCAGGGTCAGGAATTC  989

seq1: chr15_101319865_101320298
seq2: B6Ng01-194J17.g_68_501

seq1  GAATTCTGTGCCTGAAGGAAGACAGGGAGAGGGCTCCTTGATTGATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCTGAAGGAAGACAGGGAGAGGGCTCCTTGATTGATAAGG  50

seq1  CAGGGCTGGGCTTCCTGACTTAGGCAGGCAGAGACCCCAAGCACAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGGGCTTCCTGACTTAGGCAGGCAGAGACCCCAAGCACAAGCCA  100

seq1  GCTTGTCTATACCCAGGGAGCTCCTGTCAAGACTCCCCAGTGGCCCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTATACCCAGGGAGCTCCTGTCAAGACTCCCCAGTGGCCCTCAC  150

seq1  CTCTTCTTGTAGCCCTCCATGGACTCCTGCGCATGGTTGAGCTCAGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTGTAGCCCTCCATGGACTCCTGCGCATGGTTGAGCTCAGCAGC  200

seq1  CAGCCTCCCGCTGTCGGCCTCCACACACTCAGCCTCCCGCCTCAGCGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCCGCTGTCGGCCTCCACACACTCAGCCTCCCGCCTCAGCGTCT  250

seq1  CGATGTAGCCCTCGAACAGAGGCTCCATGTTGCTCTCACAGCACTTGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAGCCCTCGAACAGAGGCTCCATGTTGCTCTCACAGCACTTGCGG  300

seq1  TTCTGGTAGAACTGCCACTTGGTCTCCAGCAGCTTGTTCTGCTGCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAGAACTGCCACTTGGTCTCCAGCAGCTTGTTCTGCTGCTCCAG  350

seq1  GAAGCGCACCTGCCATGCAGAGTTAACGTCTGAGAACATACTCTTGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGCACCTGCCATGCAGAGTTAACGTCTGAGAACATACTCTTGCAGA  400

seq1  ATCACAGGGTAGGTGTGTGTGTGTGTGTGTGTGT  434
      ||||||||||||||||||||||||||||||||||
seq2  ATCACAGGGTAGGTGTGTGTGTGTGTGTGTGTGT  434