BAC Information

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BAC

Clone NameB6Ng01-196C18
Chromosome15 (Build37)
Map Location 39,897,877 - 39,898,971
singlet/doubletsinglet
Overlap geneLOC670013
Upstream geneCthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196C18.bB6Ng01-196C18.g
ACCGA018383GA018384
length1,0521,094
definitionB6Ng01-196C18.b B6Ng01-196C18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatttagttttcaactccctctgggctatgtaaccttccagggc
ctttgaggaatgctttcgaactcctgcagggttcaaccaaaataattttt
tcaacactgtatgaattaagtggagatggggtcctcaggattccatagac
tgttcatggctatgcagtagttccccccaggaaatatcatcttgttcctc
cttgaaatgaatgctctcaacctgccagagaattcccaaagaagccactt
tacctcagcctagtcccttaatagagtcccactgagccattgtccattat
catgggagcttaaaatcttaagctcttttaaatttttctgtgcagacttc
ctccaagatgccttaaatgacctagatgctaatgccacattctgacttca
gttggttatctggggaaatcccagcacagcaaactgaggacaaataagaa
attcattcagacagtggtctggaaagtgaggagaaactgttccgcccgtg
gggttggcacagcagtttggcatctgcactctgagcccagctaaattgct
ctgccgctaaaagatgcctaatggcatgcccagaagtggaacaaacacag
tcctgtgctcctgtgttttggatgcagctgtaaacatcactctgtagaag
aactaaaaatattttcaaagtaatggtaactccttgctcgcaagcacaaa
cccgtgacccataataaataacctatattactgtcataattctgccacag
ctgtgtgcaacataccaactatgttcatgatcgttaccttactcagcctg
agagcagcccatgagggcagtgcttgcctctgcttcacatggagtatcca
aagtcggtatcagacgtacgctgggtttgatacacgctctatctgacttt
ctagtctatgctactatagtctcatgctaccagctttgaatatctagaag
ctgagtcaggaatggacgctttgcacatccctgcacagagtagcttaggc
agagactggctgctggaattaattctagatgctcagagagacgtttgact
ca
gaattcacatagctgaggctcattttcaatttaagttcctctagtccttc
attcatttgccgaagttttgcaaaatggcacagcctaattaaattaatgc
agcagtgaagcttggggggatcatgctagtgagaggtgactttaaaactg
tggtcagtattctgcatcgtttagtgacataacagacttgggcattagcc
acaaaagtcagtaaaaaagaggcaaacactggctcccaaaagttgaactc
caacaaggaaagtgaatttgagcaagcctttacttaacagaaactatgac
acagaactttctacaaaagatgaacacacaccagagacattatctaactc
tggcagcccattttggcacatgggggctattggtcatttgaaattgtggg
gcactggtaccataaacaagtaagtttaattttgatttaaattgtagttt
atttcaacttttaaaatttaaaaatagcccctgggggctaggaagctatg
taacccttgggtttctaaatcccgatttatcaattttataggaggaaggc
agaggacagggaaacatcttttaattacatttactggagaataccacttg
gcaaacctccagggatggaaaatttgtaaaaacagttttcttttaaagaa
attattttgggtgattttaccaaaaaccacccatttcaaaagggctggtg
attttgaactttacaaacctggaaaaaagctttttaattgaaattttaaa
atttgaacccttagctgggattctttttaataaaactgaggggagttttt
tatttaaaacctaacattaaacttagatgaattattagtttattaaggat
gaagcacttgttctttagaggtgaattttaaatattaaatccagaataga
cattgcttcaaggataagatgaaaggatatcaagaaatggcctagagctg
gtgcagctactttatttcgacaatagactcattccacctaccagaagacg
gtagattgctacactcagtaggaatctctaagacatgcatctctacctga
ctagcagtcctagtgagatctactacttgctagtacacactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39897877_39898971
seq2: B6Ng01-196C18.b_44_1095 (reverse)

seq1  TGAGTCAAAACGTCTCTCTGAGCATCTAGAATTATAATTCCCAGCAGCCC  50
      |||||| |||||||||||||||||||||||||  ||||| ||||||||  
seq2  TGAGTC-AAACGTCTCTCTGAGCATCTAGAAT--TAATT-CCAGCAGC--  44

seq1  ACGTTCTTCCTGCCTTTAGCTAACTCTGTGCAGGGGGATGTGGCAAAGCG  100
       |  |||  ||||| | |||| ||||||||||  ||||||| ||||||||
seq2  -CAGTCT--CTGCC-TAAGCT-ACTCTGTGCA--GGGATGT-GCAAAGCG  86

seq1  TTCCATCCCCTGACTCCAGCTTCCTTAAGGATTATTTCAAAGGCTGGGTA  150
       |||||  ||||||| |||||||  ||  |||   |||||| ||| ||||
seq2  -TCCAT-TCCTGACT-CAGCTTC--TA--GAT--ATTCAAA-GCT-GGTA  125

seq1  GCAATGAAGACTAATAAGTAGCATAGACTAGAAAGTCAGAATAGGAAGCC  200
      || ||| ||||||   ||||||||||||||||||||||| ||||  || |
seq2  GC-ATG-AGACTA--TAGTAGCATAGACTAGAAAGTCAG-ATAG--AG-C  167

seq1  GTTGGTATCAAACCCAGCGTTACCTTCTGATACCGACTTTGGATACCTCC  250
      ||  ||||||||||||||||   | |||||||||||||||||||| ||||
seq2  GT--GTATCAAACCCAGCGT--ACGTCTGATACCGACTTTGGATA-CTCC  212

seq1  ATTGTGAAGCAGAGGCCAAGCACCTGCCCTCATGGGCTGCTTCTCAGGCC  300
      | ||||||||||||| |||||| ||||||||||||||||| ||||||| |
seq2  A-TGTGAAGCAGAGG-CAAGCA-CTGCCCTCATGGGCTGC-TCTCAGG-C  257

seq1  TGAGTAAGGTAACGATCATGAACATAGTTGGTATGTTGCACACAGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGGTAACGATCATGAACATAGTTGGTATGTTGCACACAGCTGTG  307

seq1  GCAGAATTATGACAGTAATATAGGTTATTTATTATGGGTCACGGGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTATGACAGTAATATAGGTTATTTATTATGGGTCACGGGTTTGT  357

seq1  GCTTGCGAGCAAGGAGTTACCATTACTTTGAAAATATTTTTAGTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCGAGCAAGGAGTTACCATTACTTTGAAAATATTTTTAGTTCTTCT  407

seq1  ACAGAGTGATGTTTACAGCTGCATCCAAAACACAGGAGCACAGGACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGATGTTTACAGCTGCATCCAAAACACAGGAGCACAGGACTGTG  457

seq1  TTTGTTCCACTTCTGGGCATGCCATTAGGCATCTTTTAGCGGCAGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCACTTCTGGGCATGCCATTAGGCATCTTTTAGCGGCAGAGCAA  507

seq1  TTTAGCTGGGCTCAGAGTGCAGATGCCAAACTGCTGTGCCAACCCCACGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGGGCTCAGAGTGCAGATGCCAAACTGCTGTGCCAACCCCACGG  557

seq1  GCGGAACAGTTTCTCCTCACTTTCCAGACCACTGTCTGAATGAATTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAACAGTTTCTCCTCACTTTCCAGACCACTGTCTGAATGAATTTCTT  607

seq1  ATTTGTCCTCAGTTTGCTGTGCTGGGATTTCCCCAGATAACCAACTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTCAGTTTGCTGTGCTGGGATTTCCCCAGATAACCAACTGAAG  657

seq1  TCAGAATGTGGCATTAGCATCTAGGTCATTTAAGGCATCTTGGAGGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGTGGCATTAGCATCTAGGTCATTTAAGGCATCTTGGAGGAAGT  707

seq1  CTGCACAGAAAAATTTAAAAGAGCTTAAGATTTTAAGCTCCCATGATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAAAAATTTAAAAGAGCTTAAGATTTTAAGCTCCCATGATAAT  757

seq1  GGACAATGGCTCAGTGGGACTCTATTAAGGGACTAGGCTGAGGTAAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATGGCTCAGTGGGACTCTATTAAGGGACTAGGCTGAGGTAAAGTG  807

seq1  GCTTCTTTGGGAATTCTCTGGCAGGTTGAGAGCATTCATTTCAAGGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTGGGAATTCTCTGGCAGGTTGAGAGCATTCATTTCAAGGAGGA  857

seq1  ACAAGATGATATTTCCTGGGGGGAACTACTGCATAGCCATGAACAGTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGATATTTCCTGGGGGGAACTACTGCATAGCCATGAACAGTCTA  907

seq1  TGGAATCCTGAGGACCCCATCTCCACTTAATTCATACAGTGTTGAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCTGAGGACCCCATCTCCACTTAATTCATACAGTGTTGAAAAAA  957

seq1  TTATTTTGGTTGAACCCTGCAGGAGTTCGAAAGCATTCCTCAAAGGCCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGTTGAACCCTGCAGGAGTTCGAAAGCATTCCTCAAAGGCCCT  1007

seq1  GGAAGGTTACATAGCCCAGAGGGAGTTGAAAACTAAATTGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTACATAGCCCAGAGGGAGTTGAAAACTAAATTGAATTC  1052