BAC Information

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BAC

Clone NameB6Ng01-196O19
Chromosome15 (Build37)
Map Location 103,026,980 - 103,027,813
singlet/doubletsinglet
Overlap geneCbx5
Upstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
Downstream geneHnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196O19.bB6Ng01-196O19.g
ACCGA018932GA018933
length832635
definitionB6Ng01-196O19.b B6Ng01-196O19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcttggcagggctggagagatggcacagcagttaagagcattg
actgctcttctaaaggcccccagttcaattcccagaaaccacatggtggc
tcacaaccatctgtaatgagattcaatgccctcttctggtatgtctgaag
actgctacagatgaaaaaaaaaattcttttcaacttgtctatacagcaag
ttgaggctagcctggtatcagagactaagtctttagaacaacaataaaat
ggtgtatggcggggaaggggcagaaaaagacatcagttcagtggcacagc
acttgcctggcatgtctaagctcaagtcccagtaccacaaaattagtttt
gaaagaggattaacacaggagaatatagtcaagtgtttaggagtatttca
cctttggttgtgaactctttagagggaagatagctctaggaaacacttct
gtccaaggctgcaattctccagcagaaacaagctacttggcacaacacat
gctggaggcacagatgggtgtctggcttctttacactgagtgttgaagat
aatactagaatcccggttccctatttctatatataaccaggaaaagtact
aagaagaaaacaaggatgttttggtaatagttaacagaaaaccaatactc
catgaacttttaagagaaaaaaattacaagagcattaaaaccagcaggac
actttttcccttcattttttgcattacaaggcattaactctcagactgta
tcctcggtccttttatttttatcttgagtcagggtctcactaagttccaa
acaggccttgaacatacagtaccccctgtatc
gaattcatttattcagcaaacatttattgagtgcttgctgtgtcgtgcca
gcacttttacccagactcgtccaatcctgtcatcaactctgggaggcagg
tactgttgttctggtttgacagatgagaaatgagactgaaccaggcagag
gaaccagctactcgcccagttagtgcacagtgaaaccatctcatgggaga
ctgtttatataaagtcctgtcaatgaataagcctctggaggctggagaga
tggctcggcagttagcagcacttgctgctcttgcagaggacttgagttgg
gtttcaatgcctacattgcagcttacaaccaacccttcattccagttcca
ggggatccagcaccctcttctggtctccgggggtaccagatatacacaca
gtacatttttcatacatgcaggcaaaacactggtacacataaaaataaag
ttttttttaaaaaaacaaattgccagttgtggtagtgtacacctcccaga
actttgtgagttcaaggtcagcctggtctgcatgtctgcatactgagtgc
caggagagccaggactatagtctcgaagaaaggaaggaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaacgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103026980_103027813
seq2: B6Ng01-196O19.b_46_877

seq1  GAATTCAGCTTGGCAGGGCTGGAGAGATGGCACAGCAGTTAAGAGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTGGCAGGGCTGGAGAGATGGCACAGCAGTTAAGAGCATTG  50

seq1  ACTGCTCTTCTAAAGGCCCCCAGTTCAATTCCCAGAAACCACATGGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCTAAAGGCCCCCAGTTCAATTCCCAGAAACCACATGGTGGC  100

seq1  TCACAACCATCTGTAATGAGATTCAATGCCCTCTTCTGGTATGTCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGTAATGAGATTCAATGCCCTCTTCTGGTATGTCTGAAG  150

seq1  ACTGCTACAGATGAAAAAAAAAATTCTTTTCAACTTGTCTATACAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACAGATGAAAAAAAAAATTCTTTTCAACTTGTCTATACAGCAAG  200

seq1  TTGAGGCTAGCCTGGTATCAGAGACTAAGTCTTTAGAACAACAATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTAGCCTGGTATCAGAGACTAAGTCTTTAGAACAACAATAAAAT  250

seq1  GGTGTATGGCGGGGAAGGGGCAGAAAAAGACATCAGTTCAGTGGCACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATGGCGGGGAAGGGGCAGAAAAAGACATCAGTTCAGTGGCACAGC  300

seq1  ACTTGCCTGGCATGTCTAAGCTCAAGTCCCAGTACCACAAAATTAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTGGCATGTCTAAGCTCAAGTCCCAGTACCACAAAATTAGTTTT  350

seq1  GAAAGAGGATTAACACAGGAGAATATAGTCAAGTGTTTAGGAGTATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGATTAACACAGGAGAATATAGTCAAGTGTTTAGGAGTATTTCA  400

seq1  CCTTTGGTTGTGAACTCTTTAGAGGGAAGATAGCTCTAGGAAACACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTTGTGAACTCTTTAGAGGGAAGATAGCTCTAGGAAACACTTCT  450

seq1  GTCCAAGGCTGCAATTCTCCAGCAGAAACAAGCTACTTGGCACAACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGCTGCAATTCTCCAGCAGAAACAAGCTACTTGGCACAACACAT  500

seq1  GCTGGAGGCACAGATGGGTGTCTGGCTTCTTTACACTGAGTGTTGAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGCACAGATGGGTGTCTGGCTTCTTTACACTGAGTGTTGAAGAT  550

seq1  AATACTAGAATCCCGGTTCCCTATTTCTATATATAACCAGGAAAAGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGAATCCCGGTTCCCTATTTCTATATATAACCAGGAAAAGTACT  600

seq1  AAGAAGAAAACAAGGATGTTTTGGTAATAGTTAACAGAAAACCAATACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAACAAGGATGTTTTGGTAATAGTTAACAGAAAACCAATACTC  650

seq1  CATGAACTTTTAAGAGAAAAAAATTACAAAGAGCATTAAAACCAGCAGGA  700
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGAACTTTTAAGAGAAAAAAATTAC-AAGAGCATTAAAACCAGCAGGA  699

seq1  CACTTTTTCCCTTCATTTTTTGCATTACAAGGCATTAACTCTCAGACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTCCCTTCATTTTTTGCATTACAAGGCATTAACTCTCAGACTGT  749

seq1  ATCCTCGGTCCTTTTATTTTTTATCTTGAGTCAGGGTCTCACTAAGTTCC  800
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  ATCCTCGGTCCTTTTA-TTTTTATCTTGAGTCAGGGTCTCACTAAGTT-C  797

seq1  CAAACAGGCCTTGAACATACAGTA-CCCCTGTATC  834
      |||||||||||||||||||||||| ||||||||||
seq2  CAAACAGGCCTTGAACATACAGTACCCCCTGTATC  832