BAC Information

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BAC

Clone NameB6Ng01-197E05
Chromosome15 (Build37)
Map Location 102,789,183 - 102,922,644
singlet/doubletdoublet
Overlap geneHoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Upstream geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11
Downstream geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197E05.bB6Ng01-197E05.g
ACCGA019175GA019176
length1,117708
definitionB6Ng01-197E05.b B6Ng01-197E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,921,525 - 102,922,644)(102,789,183 - 102,789,890)
sequence
gaattcattcactaactacatgcctactgaacactttcatacatatatgt
taaggatagtattttagctgggtggtggcagtgcacacctttaaccccag
aacttgggagataaagctagatggatctctgtgagtttgaggtcagcctg
gtctacagagtgggttccaggacagctaggactacacagagaaaccctgt
cttgaaaaaccaaaccaaaccaaccatccatccatccatccatccaacca
accgaccaaacaactccagtatttgaaatgtagcgtcatattgcccttgt
ctcctacttctcaagaggtagtcccaggattctgagaccaggaaagtcac
cccagattctgaaaatgagggatcccctatgggcaggtatcccataggtg
tgccattttagacactatcacaaggatagacatgcttgttgggactaggc
ccaaggggtcatcctggatctagcatgagtacaaaaggttcccacgggcc
ctcagcttctccaagctgcaggcaggcatactggaatagcacaccaggcc
cctgcctgtggaaacttacatttagacacaaattagagccagcaaatgac
tctggcagtcaaatcagccatcccaggagagtgaagagctagccaagaga
accaactgagatgaggcaggagttcaaacttcaggagacactcttcagaa
taggccaaaacaggattccataatgaagagtcccagaagtcccccctgct
cccctcacaccatctctgtgctccatgccagacaggttgggctctccact
gtttactccttcatacaaaaagtatgtgaggctgggtctctgagacctat
gaattgtagtgtctcatgggagcagttgaggacaaggacatgtggggact
cttcttgtcctctggcttggaagtgtctcgctgctccccaagcatggctg
gctgcttggctggctttttggagcagtgcaggcacccagttgctggcttc
tttgtgggtgtctgcgacttcgttcatgcatgcccagacaggcaaagcaa
ggttgcctttctgttcacccaagccacctgaatcccagtatgggcctggg
gtgcttggaattgtcac
gaattccaagataatgttttcatccatgcttgttgaatgaaggggaaaag
taccctgggtttcaagtacagataatactctctgttttgatggcagagat
tcctgaatctctaatttgtaattgtgtggcacgttgagatttgccaactt
gggagtattgtgactcaaaagcttttgcatactcacaaacattttaatat
tcaaggtgtcatccttctgtgtgctcatgaggaggaatatagtttgtgta
catttgtctgcatggaacaaatgtgacgtgatgtgcccacttatgtcctt
cgtctctggtgtctgaacagtcagtatttaatgaatgtaaacaggaattc
aactgagggttttctgtgtatttgtgtatgggggcatttcttgagatggg
atatttatctactatatttagctatatcaaggactgttatcatgctggcc
atattttctatataaaaatagacaagaatagaacaaactatttaaaaagg
agactattaacctccaaaggactgcctattttggagaaagatatttagaa
caggcagttatcactgttctaaaagatacaagctcagaaaagaatctctc
ttccagaagatatttctggtgaatgagaggaaagttatcatgaaagaaaa
tcaaaggtttgtgtgatttgagtccaagaaccggccagggtgtggtgaca
gagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102921525_102922644
seq2: B6Ng01-197E05.b_43_1159 (reverse)

seq1  GTGACAA-TCCCAGCACCCCA-GCCCATACT-GGATTCAGTGGGCTTGTG  47
      ||||||| ||| ||||||||| ||||||||| ||||||||  |||||| |
seq2  GTGACAATTCCAAGCACCCCAGGCCCATACTGGGATTCAGGTGGCTTGGG  50

seq1  TGAACCAGAAAGGCAACCTTGCTTTGCCTGTCTGGGCATGGCATGAACGA  97
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAA-CAGAAAGGCAACCTTGCTTTGCCTGTCTGGGCAT-GCATGAACGA  98

seq1  AGTCTGCAGACACCCACAAAGAAGCCAGCAACTGGGTGCCCTTGCACCTG  147
      |||| |||||||||||||||||||||||||||||||||||  |||| |||
seq2  AGTC-GCAGACACCCACAAAGAAGCCAGCAACTGGGTGCC--TGCA-CTG  144

seq1  CTCCCAAAAAGCCAGCCAAGCAGCCAGCCATGCTTGGGGAGCAGCGAGAC  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CCAAAAAGCCAGCCAAGCAGCCAGCCATGCTTGGGGAGCAGCGAGAC  193

seq1  ACTTCCAAGCCAGAGGACAAG-AGAGTCCCCACATGTCCTTGTCCTCAAC  246
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTCCAAGCCAGAGGACAAGAAGAGTCCCCACATGTCCTTGTCCTCAAC  243

seq1  TGCTCCCATGAGACACTACAATTCATAGGTCTCAGAGACCCAGCCTCACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCATGAGACACTACAATTCATAGGTCTCAGAGACCCAGCCTCACA  293

seq1  TACTTTTTGTATGAAGGAGTAAACAGTGGAGAGCCCAACCTGTCTGGCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTGTATGAAGGAGTAAACAGTGGAGAGCCCAACCTGTCTGGCAT  343

seq1  GGAGCACAGAGATGGTGTGAGGGGAGCAGGGGGGACTTCTGGGACTCTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACAGAGATGGTGTGAGGGGAGCAGGGGGGACTTCTGGGACTCTTC  393

seq1  ATTATGGAATCCTGTTTTGGCCTATTCTGAAGAGTGTCTCCTGAAGTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGAATCCTGTTTTGGCCTATTCTGAAGAGTGTCTCCTGAAGTTTG  443

seq1  AACTCCTGCCTCATCTCAGTTGGTTCTCTTGGCTAGCTCTTCACTCTCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCCTCATCTCAGTTGGTTCTCTTGGCTAGCTCTTCACTCTCCT  493

seq1  GGGATGGCTGATTTGACTGCCAGAGTCATTTGCTGGCTCTAATTTGTGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCTGATTTGACTGCCAGAGTCATTTGCTGGCTCTAATTTGTGTC  543

seq1  TAAATGTAAGTTTCCACAGGCAGGGGCCTGGTGTGCTATTCCAGTATGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAGTTTCCACAGGCAGGGGCCTGGTGTGCTATTCCAGTATGCC  593

seq1  TGCCTGCAGCTTGGAGAAGCTGAGGGCCCGTGGGAACCTTTTGTACTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAGCTTGGAGAAGCTGAGGGCCCGTGGGAACCTTTTGTACTCAT  643

seq1  GCTAGATCCAGGATGACCCCTTGGGCCTAGTCCCAACAAGCATGTCTATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATCCAGGATGACCCCTTGGGCCTAGTCCCAACAAGCATGTCTATC  693

seq1  CTTGTGATAGTGTCTAAAATGGCACACCTATGGGATACCTGCCCATAGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGATAGTGTCTAAAATGGCACACCTATGGGATACCTGCCCATAGGG  743

seq1  GATCCCTCATTTTCAGAATCTGGGGTGACTTTCCTGGTCTCAGAATCCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTCATTTTCAGAATCTGGGGTGACTTTCCTGGTCTCAGAATCCTG  793

seq1  GGACTACCTCTTGAGAAGTAGGAGACAAGGGCAATATGACGCTACATTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACCTCTTGAGAAGTAGGAGACAAGGGCAATATGACGCTACATTTC  843

seq1  AAATACTGGAGTTGTTTGGTCGGTTGGTTGGATGGATGGATGGATGGATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGGAGTTGTTTGGTCGGTTGGTTGGATGGATGGATGGATGGATG  893

seq1  GTTGGTTTGGTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGTCCTAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTGGTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGTCCTAGC  943

seq1  TGTCCTGGAACCCACTCTGTAGACCAGGCTGACCTCAAACTCACAGAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACCCACTCTGTAGACCAGGCTGACCTCAAACTCACAGAGAT  993

seq1  CCATCTAGCTTTATCTCCCAAGTTCTGGGGTTAAAGGTGTGCACTGCCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGCTTTATCTCCCAAGTTCTGGGGTTAAAGGTGTGCACTGCCAC  1043

seq1  CACCCAGCTAAAATACTATCCTTAACATATATGTATGAAAGTGTTCAGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCTAAAATACTATCCTTAACATATATGTATGAAAGTGTTCAGTA  1093

seq1  GGCATGTAGTTAGTGAATGAATTC  1120
      ||||||||||||||||||||||||
seq2  GGCATGTAGTTAGTGAATGAATTC  1117

seq1: chr15_102789183_102789890
seq2: B6Ng01-197E05.g_67_774

seq1  GAATTCCAAGATAATGTTTTCATCCATGCTTGTTGAATGAAGGGGAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATAATGTTTTCATCCATGCTTGTTGAATGAAGGGGAAAAG  50

seq1  TACCCTGGGTTTCAAGTACAGATAATACTCTCTGTTTTGATGGCAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGGTTTCAAGTACAGATAATACTCTCTGTTTTGATGGCAGAGAT  100

seq1  TCCTGAATCTCTAATTTGTAATTGTGTGGCACGTTGAGATTTGCCAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATCTCTAATTTGTAATTGTGTGGCACGTTGAGATTTGCCAACTT  150

seq1  GGGAGTATTGTGACTCAAAAGCTTTTGCATACTCACAAACATTTTAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATTGTGACTCAAAAGCTTTTGCATACTCACAAACATTTTAATAT  200

seq1  TCAAGGTGTCATCCTTCTGTGTGCTCATGAGGAGGAATATAGTTTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGTCATCCTTCTGTGTGCTCATGAGGAGGAATATAGTTTGTGTA  250

seq1  CATTTGTCTGCATGGAACAAATGTGACGTGATGTGCCCACTTATGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTGCATGGAACAAATGTGACGTGATGTGCCCACTTATGTCCTT  300

seq1  CGTCTCTGGTGTCTGAACAGTCAGTATTTAATGAATGTAAACAGGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTGGTGTCTGAACAGTCAGTATTTAATGAATGTAAACAGGAATTC  350

seq1  AACTGAGGGTTTTCTGTGTATTTGTGTATGGGGGCATTTCTTGAGATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGGTTTTCTGTGTATTTGTGTATGGGGGCATTTCTTGAGATGGG  400

seq1  ATATTTATCTACTATATTTAGCTATATCAAGGACTGTTATCATGCTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCTACTATATTTAGCTATATCAAGGACTGTTATCATGCTGGCC  450

seq1  ATATTTTCTATATAAAAATAGACAAGAATAGAACAAACTATTTAAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTATATAAAAATAGACAAGAATAGAACAAACTATTTAAAAAGG  500

seq1  AGACTATTAACCTCCAAAGGACTGCCTATTTTGGAGAAAGATATTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTAACCTCCAAAGGACTGCCTATTTTGGAGAAAGATATTTAGAA  550

seq1  CAGGCAGTTATCACTGTTCTAAAAGATACAAGCTCAGAAAAGAATCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTTATCACTGTTCTAAAAGATACAAGCTCAGAAAAGAATCTCTC  600

seq1  TTCCAGAAGATATTTCTGGTGAATGAGAGGAAAGTTATCATGAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAGATATTTCTGGTGAATGAGAGGAAAGTTATCATGAAAGAAAA  650

seq1  TCAAAGGTTTGTGTGATTTGAGTCCAAGAACCGGCCAGGGTGTGGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTTTGTGTGATTTGAGTCCAAGAACCGGCCAGGGTGTGGTGACA  700

seq1  GAGAGAGA  708
      ||||||||
seq2  GAGAGAGA  708