BAC Information

Click to search

BAC

Clone NameB6Ng01-198F03
Chromosome15 (Build37)
Map Location 43,230,673 - 43,231,759
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039197, Angpt1, Rspo2, LOC675960, Eif3s6
Downstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198F03.bB6Ng01-198F03.g
ACCGA019947GA019948
length1,0851,165
definitionB6Ng01-198F03.b B6Ng01-198F03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgactatattctaacttctagtgctacaaatgaatattcact
gtgaaaaaaatacaaaatgccaagtgtagtttacagtaaatttcaatatt
tccacttgaaaaagcactaagcttttagaacttttgtctcaccagtggtt
gcaactaggctagtaatagccagaacttggtaaagattagagaaaaccca
ttacattactataaacacatttgtgctgttacagtttcttgctatgtgca
aacaacacttttaaattgtcttactaattctcccaaactatactatatct
actaattgtagaacaattgttcttttaagaaaggtaaaaagaatggtcta
gtctaaagatttcagacatcagagatagaattaaaaccaaatatttcaat
gttgtttgtattttttcttttcaaatatcatagcacatttaaatctttta
catcaaatgactatttgtgtcttgttgtattctagtcctagggtgctgtc
aatatatattttgttttaactattcttgattgtatctttttttcctaaaa
atgattttccctagtgacaaatgaaattcaagtgatgactacaagaaagg
agattttaagaggttttccagaaccagagtcattggtgacatttccatta
atcacacacagtctcaacacaggccatcttacagagaagtctctctctaa
taagcataatatacagaggttaaaatagccctgttgtgtttatctttcac
tacacagcttacccaaagcaaatttctgtcatcaacaattattaatcatc
catatgccctgcagagaattttaataaagcatattatgaacctgggggtg
gtggtgttgtatgaaagacacaaatgggacttgcatttattaaaaggaga
tgagggtccccgttacttccaccacatctgtttgccacatgctcataaat
cacaacaatgttttgaacatttctcctagcaccttcctgtcacctcagtt
tataagtcataattctgcccttcatacacccataccctgtccccccccca
ttatgaaaggaagggaaagaaggaggaagaaagac

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcacccta
taggtggaacaacattatgagctaacagtaccccggagctcttgactcta
gctgcatatatatcaaagatggctagtcgcaatcactgaagagaaggctc
attggactgcacttaattggcctcagtacaggggtaattacaggccataa
aagaggggggagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43230673_43231759
seq2: B6Ng01-198F03.b_44_1128

seq1  GAATTCCTTGACTATATTCTAACTTCTAGTGCTACAAATGAATATTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACTATATTCTAACTTCTAGTGCTACAAATGAATATTCACT  50

seq1  GTGAAAAAAATACAAAATGCCAAGTGTAGTTTACAGTAAATTTCAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAAATACAAAATGCCAAGTGTAGTTTACAGTAAATTTCAATATT  100

seq1  TCCACTTGAAAAAGCACTAAGCTTTTAGAACTTTTGTCTCACCAGTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGAAAAAGCACTAAGCTTTTAGAACTTTTGTCTCACCAGTGGTT  150

seq1  GCAACTAGGCTAGTAATAGCCAGAACTTGGTAAAGATTAGAGAAAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGGCTAGTAATAGCCAGAACTTGGTAAAGATTAGAGAAAACCCA  200

seq1  TTACATTACTATAAACACATTTGTGCTGTTACAGTTTCTTGCTATGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTACTATAAACACATTTGTGCTGTTACAGTTTCTTGCTATGTGCA  250

seq1  AACAACACTTTTAAATTGTCTTACTAATTCTCCCAAACTATACTATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACTTTTAAATTGTCTTACTAATTCTCCCAAACTATACTATATCT  300

seq1  ACTAATTGTAGAACAATTGTTCTTTTAAGAAAGGTAAAAAGAATGGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTGTAGAACAATTGTTCTTTTAAGAAAGGTAAAAAGAATGGTCTA  350

seq1  GTCTAAAGATTTCAGACATCAGAGATAGAATTAAAACCAAATATTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGATTTCAGACATCAGAGATAGAATTAAAACCAAATATTTCAAT  400

seq1  GTTGTTTGTATTTTTTCTTTTCAAATATCATAGCACATTTAAATCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTATTTTTTCTTTTCAAATATCATAGCACATTTAAATCTTTTA  450

seq1  CATCAAATGACTATTTGTGTCTTGTTGTATTCTAGTCCTAGGGTGCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGACTATTTGTGTCTTGTTGTATTCTAGTCCTAGGGTGCTGTC  500

seq1  AATATATATTTTGTTTTAACTATTCTTGATTGTATCTTTTTTTCCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTTTGTTTTAACTATTCTTGATTGTATCTTTTTTTCCTAAAA  550

seq1  ATGATTTTCCCTAGTGACAAATGAAATTCAAGTGATGACTACAAGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTCCCTAGTGACAAATGAAATTCAAGTGATGACTACAAGAAAGG  600

seq1  AGATTTTAAGAGGTTTTCCAGAACCAGAGTCATTGGTGACATTTCCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAAGAGGTTTTCCAGAACCAGAGTCATTGGTGACATTTCCATTA  650

seq1  ATCACACACAGTCTCAACACAGGCCATCTTACAGAGAAGTCTCTCTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACACAGTCTCAACACAGGCCATCTTACAGAGAAGTCTCTCTCTAA  700

seq1  TAAGCATAATATACAGAGGTTAAAATAGCCCTGTTGTGTTTATCTTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAATATACAGAGGTTAAAATAGCCCTGTTGTGTTTATCTTTCAC  750

seq1  TACACAGCTTACCCAAAGCAAATTTCTGTCATCAACAATTATTAATCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCTTACCCAAAGCAAATTTCTGTCATCAACAATTATTAATCATC  800

seq1  CATATGCCCTGCAGAGAATTTTAATAAAGCATATTATGAACCTGGGGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCCTGCAGAGAATTTTAATAAAGCATATTATGAACCTGGGGGTG  850

seq1  GTGGTGTTGTATGAAAGACACAAATGGGACTTGCATTTA-TAAAAGGAGA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGGTGTTGTATGAAAGACACAAATGGGACTTGCATTTATTAAAAGGAGA  900

seq1  TGAGGGTCCCCGTTAC-TCCACCACATCTGTTTGCCACATGCTCATAAAT  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAGGGTCCCCGTTACTTCCACCACATCTGTTTGCCACATGCTCATAAAT  950

seq1  CACAACAATGTTTTGAACATTTCTCCTAGCACCTTCCTGTCACCTCAGTT  998
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACAACAATGTTTTGAACATTTCTCCTAGCACCTTCCTGTCACCTCAG-T  999

seq1  TTATAGTTCATAATTCTGCCCTTCATACACCCATACCCTGCCCCCCCCCA  1048
      |||||  ||||||||||||||||||||||||||||||||| |||||||| 
seq2  TTATAAGTCATAATTCTGCCCTTCATACACCCATACCCTGTCCCCCCCCC  1049

seq1  ATTTATGAAAGGAAGGGAAAGAAGGAAGGAAGGAAAGAC  1087
      | ||||||||||||||||||||||| ||||| |||||||
seq2  A-TTATGAAAGGAAGGGAAAGAAGG-AGGAA-GAAAGAC  1085


| Home | SequenceCutter | Blast | Download |