BAC Information

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BAC

Clone NameB6Ng01-198F04
Chromosome15 (Build37)
Map Location 102,533,328 - 102,618,001
singlet/doubletdoublet
Overlap geneCalcoco1
Upstream geneKrt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2
Downstream geneLOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198F04.bB6Ng01-198F04.g
ACCGA019949GA019950
length1,1741,077
definitionB6Ng01-198F04.b B6Ng01-198F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,616,822 - 102,618,001)(102,533,328 - 102,534,379)
sequence
gaattccttttcaaaaacctcttgtggaattgtataagatagaaaagcct
ataataaatagctggtgccattattttcaacaatgcggttatccttggtc
tatcagaactgggtaaacaggaacttgggaaatggcttagtttgtgcagt
gcttttcataaaaacataagaattcagatcttcagcacctgagtgaaatg
ttagatgcgttggtgtgcaccttcagtgccagcattcaggaagccaagac
agaggctccctaaggcttactgaactggtgaggaaccctgtctcatataa
ggcagagagtgactgggaagatacccaaggtcgatttctgacctctaccc
tctacacacatacacacatattctctctctctctctctctctctctagcc
attcaacttccaattatcaattaagtgaagccaaaagtctatgtctaaga
aataatgtgaacccaagaaggtgactgtcactgggtctaggaaagagcca
caatccaagcattaccttgacccctcgacttccttaaggattatcaactt
atattacaaacccacaaaagaagaaaagaaggaagagtgggcttaaaaag
tcaaaacactgttctataaacccaaggaattccttttgccctggcccctt
aatttaaccacatcttatttaagcttcgggcttcttcatcgcaacatctc
agatcactgtgaaagtccttcctgaaaactaaccaccaggacctctgcag
tgcctaattccctgttgcttgtgttgtctctaaaaccttcttcatatttc
ttcaaaatcactgatgaaggctgagaaaagaaatgtaaatgaggataaaa
gaaagccaaaagggtttttaataggtagcagtgggtgggcttaaaggaca
agcaggttgggatgggaaacatttgtaggataataattacaagaccaaat
cagccaaagttgttggaagtgaataaactttctccacttcctcagaaaga
aataaccctgatgagagagagaccgagacgagaagagagagtagactgac
tgagaaacgagagagactgagcagaggagagagctgagtagaccagcagc
tctacagaaaattcctgggactatccagatgcctactgagacacacccac
ggagggttatttccaattgtattc
gaattcactatgtaggcctcaaacccagagaagtacctgactctgtctcc
caagtgttgggattaaaggtgtgaacctccactgcccagctcctgttttt
cttacactttggttcagggacttttgtttatcttattacattaaaatttc
atttattctgtatgtatatgtgtgtgtgcatgtgccatgatgcagttgtg
gatgtcagaggtcaacttactggagtcggttcccttccttcaactgtgtg
gcttctgagggctggtcaggcatggcagcaagtgctttaaattgctgagt
cattttgctggcttagccctcactttttatgagtctggttatattctcaa
tccccaaaggtcggaactctgtacctattgcaggggctgtgaagtccggc
tatgcagccactgccacacctaactgtcatgtgtccctgaagccagtgtc
ccagctgtcagtccagtgtcttccaggagtcattttcctggccttggtgc
ggaacctgcttctgttagatcttctctttgtcacctctcataagtagctt
cttatctctccctggtcctttcccatcatctccatcattttacctttacc
tctcccttcaatgttgatattttccgttctgtccctgaccgtctggcctt
catttcatgcaagttgccccaaccctcttcttttttaatgtggaggttta
gatggttgtagaccaccatgggagttgaacctgtatctactggaagagca
gccagtgctcttaactgctaagagttaagcaccgtatctccagccctgac
caatcagcttttaatcaccaaacatcactaacaccattttcagtgctata
gattgcttgacaaaaaacaagataggtgttggttgctattgagtttgttt
ttttgtttactttaagaatctattatggtagtgttcttgatgagttagat
tcagcccacctggtaactcccaattctggggggatcctgatggtctttct
ttctgggccttcttcagggtacttagactatgccatgcaggcaaacccac
tcaatacacattttgagatggatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102616822_102618001
seq2: B6Ng01-198F04.b_45_1218 (reverse)

seq1  GGATACAATAGAAAATAA-CCTCCGT-GGTGTGTCTCAGTTAGGGGCATC  48
      | ||||||| | |||||| ||||||| |||||||||||||    ||||||
seq2  GAATACAATTGGAAATAACCCTCCGTGGGTGTGTCTCAGT---AGGCATC  47

seq1  TTGATAGTCCACAGGGATTTTCTGTAAGAGGCCTGCTGGTCTACTCTGCC  98
      | |||||||| |||| ||||||||| ||||  |||||||||||||| || 
seq2  TGGATAGTCC-CAGGAATTTTCTGT-AGAG--CTGCTGGTCTACTCAGCT  93

seq1  TTCTCTCTCTGCTCTGTCTCTCTCTGTTTCTCTGTCTGTCT-CTCTCTCT  147
       |||| |||||||| ||||||||| ||||||| ||| |||| ||||||||
seq2  CTCTC-CTCTGCTCAGTCTCTCTC-GTTTCTCAGTCAGTCTACTCTCTCT  141

seq1  TCTCTGTCTCTGTCTCTCTCTTCATCAGGTTTATTTCTTTCTGAGGAAGT  197
      |||| ||||| ||||||||| |||||||| ||||||||||||||||||||
seq2  TCTC-GTCTCGGTCTCTCTC-TCATCAGGGTTATTTCTTTCTGAGGAAGT  189

seq1  GGAGAAAGTTTATTCAC-TCCAACAACTTTGGCTGATTTGGTCTTGTAAT  246
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAGAAAGTTTATTCACTTCCAACAACTTTGGCTGATTTGGTCTTGTAAT  239

seq1  TATTATCCTACAAATG-TTCCCATCCCAACCTGCTTGTCCTTTAAGCCCA  295
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATTATCCTACAAATGTTTCCCATCCCAACCTGCTTGTCCTTTAAGCCCA  289

seq1  CCCACTGCTACCTATTAAAAACCCTTTTGGCTTTCTTTTATCCTCATTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCTACCTATTAAAAACCCTTTTGGCTTTCTTTTATCCTCATTTA  339

seq1  CATTTCTTTTCTCAGCCTTCATCAGTGATTTTGAAGAAATATGAAGAAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTCTCAGCCTTCATCAGTGATTTTGAAGAAATATGAAGAAGG  389

seq1  TTTTAGAGACAACACAAGCAACAGGGAATTAGGCACTGCAGAGGTCCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGACAACACAAGCAACAGGGAATTAGGCACTGCAGAGGTCCTGG  439

seq1  TGGTTAGTTTTCAGGAAGGACTTTCACAGTGATCTGAGATGTTGCGATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGTTTTCAGGAAGGACTTTCACAGTGATCTGAGATGTTGCGATGA  489

seq1  AGAAGCCCGAAGCTTAAATAAGATGTGGTTAAATTAAGGGGCCAGGGCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCGAAGCTTAAATAAGATGTGGTTAAATTAAGGGGCCAGGGCAA  539

seq1  AAGGAATTCCTTGGGTTTATAGAACAGTGTTTTGACTTTTTAAGCCCACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTCCTTGGGTTTATAGAACAGTGTTTTGACTTTTTAAGCCCACT  589

seq1  CTTCCTTCTTTTCTTCTTTTGTGGGTTTGTAATATAAGTTGATAATCCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTTTTCTTCTTTTGTGGGTTTGTAATATAAGTTGATAATCCTT  639

seq1  AAGGAAGTCGAGGGGTCAAGGTAATGCTTGGATTGTGGCTCTTTCCTAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTCGAGGGGTCAAGGTAATGCTTGGATTGTGGCTCTTTCCTAGA  689

seq1  CCCAGTGACAGTCACCTTCTTGGGTTCACATTATTTCTTAGACATAGACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGACAGTCACCTTCTTGGGTTCACATTATTTCTTAGACATAGACT  739

seq1  TTTGGCTTCACTTAATTGATAATTGGAAGTTGAATGGCTAGAGAGAGAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCACTTAATTGATAATTGGAAGTTGAATGGCTAGAGAGAGAGA  789

seq1  GAGAGAGAGAGAGAATATGTGTGTATGTGTGTAGAGGGTAGAGGTCAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAATATGTGTGTATGTGTGTAGAGGGTAGAGGTCAGAA  839

seq1  ATCGACCTTGGGTATCTTCCCAGTCACTCTCTGCCTTATATGAGACAGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACCTTGGGTATCTTCCCAGTCACTCTCTGCCTTATATGAGACAGGG  889

seq1  TTCCTCACCAGTTCAGTAAGCCTTAGGGAGCCTCTGTCTTGGCTTCCTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACCAGTTCAGTAAGCCTTAGGGAGCCTCTGTCTTGGCTTCCTGA  939

seq1  ATGCTGGCACTGAAGGTGCACACCAACGCATCTAACATTTCACTCAGGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCACTGAAGGTGCACACCAACGCATCTAACATTTCACTCAGGTG  989

seq1  CTGAAGATCTGAATTCTTATGTTTTTATGAAAAGCACTGCACAAACTAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATCTGAATTCTTATGTTTTTATGAAAAGCACTGCACAAACTAAG  1039

seq1  CCATTTCCCAAGTTCCTGTTTACCCAGTTCTGATAGACCAAGGATAACCG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCAAGTTCCTGTTTACCCAGTTCTGATAGACCAAGGATAACCG  1089

seq1  CATTGTTGAAAATAATGGCACCAGCTATTTATTATAGGCTTTTCTATCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGAAAATAATGGCACCAGCTATTTATTATAGGCTTTTCTATCTT  1139

seq1  ATACAATTCCACAAGAGGTTTTTGAAAAGGAATTC  1180
      |||||||||||||||||||||||||||||||||||
seq2  ATACAATTCCACAAGAGGTTTTTGAAAAGGAATTC  1174

seq1: chr15_102533328_102534379
seq2: B6Ng01-198F04.g_65_1141

seq1  GAATTCACTATGTAGGCCTCAAACCCAGAGAAGTACCTGACTCTGTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGGCCTCAAACCCAGAGAAGTACCTGACTCTGTCTCC  50

seq1  CAAGTGTTGGGATTAAAGGTGTGAACCTCCACTGCCCAGCTCCTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTGGGATTAAAGGTGTGAACCTCCACTGCCCAGCTCCTGTTTTT  100

seq1  CTTACACTTTGGTTCAGGGACTTTTGTTTATCTTATTACATTAAAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTTTGGTTCAGGGACTTTTGTTTATCTTATTACATTAAAATTTC  150

seq1  ATTTATTCTGTATGTATATGTGTGTGTGCATGTGCCATGATGCAGTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCTGTATGTATATGTGTGTGTGCATGTGCCATGATGCAGTTGTG  200

seq1  GATGTCAGAGGTCAACTTACTGGAGTCGGTTCCCTTCCTTCAACTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGAGGTCAACTTACTGGAGTCGGTTCCCTTCCTTCAACTGTGTG  250

seq1  GCTTCTGAGGGCTGGTCAGGCATGGCAGCAAGTGCTTTAAATTGCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGAGGGCTGGTCAGGCATGGCAGCAAGTGCTTTAAATTGCTGAGT  300

seq1  CATTTTGCTGGCTTAGCCCTCACTTTTTATGAGTCTGGTTATATTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTGGCTTAGCCCTCACTTTTTATGAGTCTGGTTATATTCTCAA  350

seq1  TCCCCAAAGGTCGGAACTCTGTACCTATTGCAGGGGCTGTGAAGTCCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAGGTCGGAACTCTGTACCTATTGCAGGGGCTGTGAAGTCCGGC  400

seq1  TATGCAGCCACTGCCACACCTAACTGTCATGTGTCCCTGAAGCCAGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCCACTGCCACACCTAACTGTCATGTGTCCCTGAAGCCAGTGTC  450

seq1  CCAGCTGTCAGTCCAGTGTCTTCCAGGAGTCATTTTCCTGGCCTTGGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTCAGTCCAGTGTCTTCCAGGAGTCATTTTCCTGGCCTTGGTGC  500

seq1  GGAACCTGCTTCTGTTAGATCTTCTCTTTGTCACCTCTCATAAGTAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGCTTCTGTTAGATCTTCTCTTTGTCACCTCTCATAAGTAGCTT  550

seq1  CTTATCTCTCCCTGGTCCTTTCCCATCATCTCCATCATTTTACCTTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCTCCCTGGTCCTTTCCCATCATCTCCATCATTTTACCTTTACC  600

seq1  TCTCCCTTCAATGTTGATATTTTCCGTTCTGTCCCTGACCGTCTGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCAATGTTGATATTTTCCGTTCTGTCCCTGACCGTCTGGCCTT  650

seq1  CATTTCATGCAAGTTGCCCCAACCCTCTTCTTTTTTAATGTGGAGGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATGCAAGTTGCCCCAACCCTCTTCTTTTTTAATGTGGAGGTTTA  700

seq1  GATGGTTGTAGACCACCATGGGAGTTGAACCTGTATCTACTGGAAGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTAGACCACCATGGGAGTTGAACCTGTATCTACTGGAAGAGCA  750

seq1  GCCAGTGCTCTTAACTGCTAAGAGTTAAGCACCGTATCTCCAGCCCTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCTCTTAACTGCTAAGAGTTAAGCACCGTATCTCCAGCCCTGAC  800

seq1  CAATCAGCTTTAAATCACCAAACATCACTAACACCA-TTTCAGTGCTATA  849
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CAATCAGCTTTTAATCACCAAACATCACTAACACCATTTTCAGTGCTATA  850

seq1  GATTGCTTGAC-AAAAACAAGATAGGTGTTGGTTGCTATTGAGTT--GTT  896
      ||||||||||| |||||||||||||||||||||||||||||||||   ||
seq2  GATTGCTTGACAAAAAACAAGATAGGTGTTGGTTGCTATTGAGTTTGTTT  900

seq1  TTTTGTTAAC-TTAAGAATC-ATTATGG-AGTGTTCTTGATGAG-TAGAT  942
      ||||||| || ||||||||| ||||||| ||||||||||||||| |||||
seq2  TTTTGTTTACTTTAAGAATCTATTATGGTAGTGTTCTTGATGAGTTAGAT  950

seq1  TCAG-CCACCT-GTAACT-CCAATTCT-GGGGGAT-CTGAT-GTCTT--C  984
      |||| |||||| |||||| |||||||| ||||||| ||||| |||||   
seq2  TCAGCCCACCTGGTAACTCCCAATTCTGGGGGGATCCTGATGGTCTTTCT  1000

seq1  TTCTGG--CCTCTTCA-GGTAC-TAGAC-ATG-CATGCAGGCAAA-CCAC  1027
      ||||||  | |||||| ||||| ||||| ||| |||||||||||| ||||
seq2  TTCTGGGCCTTCTTCAGGGTACTTAGACTATGCCATGCAGGCAAACCCAC  1050

seq1  TC-ATACACA-TTTGAGATAGATATAG  1052
      || ||||||| |||||||| |||||||
seq2  TCAATACACATTTTGAGATGGATATAG  1077