BAC Information

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BAC

Clone NameB6Ng01-199A21
Chromosome15 (Build37)
Map Location 65,617,967 - 65,688,163
singlet/doubletdoublet
Overlap geneC920006C10Rik
Upstream geneAdcy8, LOC268812, LOC100040790, LOC665836
Downstream geneOc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199A21.bB6Ng01-199A21.g
ACCGA020489GA020490
length1,0991,127
definitionB6Ng01-199A21.b B6Ng01-199A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,617,967 - 65,619,062)(65,687,039 - 65,688,163)
sequence
gaattccatgtctcttaaatgagccactttggaaacacagtattggactt
ctggacattgcttttatttctctaaaggggctgtggccagagtatggtgt
ctggccaatgttatgtgtactgcccacattagagatgccctggctctagg
gttgacccagatttgtgattcccaatagacccatcaagtagaatattaat
gatacccagagctaagaacagggttagccaagtgttcagaacttgttcga
aagaagaagaccaagtcctgaggactgtctcactttgaaagttacgggaa
gccccaggagaaatgacattttcttctgtcctcagagaaaatgctcaact
atcaccccagataacccaagtgcatttcaaaagcattgggctttccgaca
caaatctggcagttaaatagatccgaacgggagcctggggaaagtcacta
cactcaagactattggccttaccctcacagtcctaaagtgaccttggagt
taaaacagccagccttcctgctgcccactctgcaggtaagggccaagcca
agcagtcaccgcttgggggccgagcttagcgcttgggggcggagcctccc
agcggcaacgcgctgacgtcacgggcgtgggtcggcccaccgcgtcgtcg
acggggcgcggatcacggccggtggtcgctgtacccggtcggcgtccgct
ctctcggcaattcgtcctccgccccgacgaggcgtccgtggccgggcttc
cgcagtcatgctgcggtcggcgcggctcgcgcttcccctctgagtcccgg
gacggcggcgagcgcggcgaactcgggtcgccatgcctacccgtgagtgt
cgggccaggccgggcgggcgggcagcgcctccaggaagcgcccggtccgc
cctgagttagtttcgcttagacttcagcgtcccgtgggcggggagcgcgg
gatctctgtgcaccctcggggaaactgaggcgggagcgttacggggactg
acggcggcccgcggtgacggcgcggtaacggagaactagtgcgacccggg
aagccgggcctggtcactcgtcggccgcgggaccactcgactgtggccc
gaattcacatacatgcatttatctcggaaaatatgctctggtagaaaata
aggggcttccatagttcgagtttcaataacctgaaaacaagaaaaaacac
agagcaaaattaaaaataaaaaatcttcttatgacattgcagtgaacatt
tacagaatatctaagaacaaaactgaaaaaataccttttagcactacaag
tctacctctgcattcatactcattttgttttcacataacactaaagaatc
atcagctatcaaaagactgataataaaatatacgaagtgaaaaacaaagc
cttacagttacttaaacatactatgaagaaacagagcatgtggcaaaata
atacagacttattttagaaatcttttcaagagctcttttttccctgtgtg
ctggctcagtagttgctcctagttcagagccctgggaagggtggctcccc
aaagggtctgattactttaacaatacccaggcctcaaatatgcaaatgag
ttctaagtgaatgacctgttagaatgcaccaaaaacctacatttagcaaa
atgtgctacaagttctcttaaaaaccaaggctctccgaccaaggctttca
gggtgcatgttcccattacactacgctcaggactctgaaatagatatgaa
atcatgtcagtcactgtaatggccactgaagaaagttaaacggtgctgaa
agatgacataattcagaggcatattaaccatccacctctagctctaacgc
aacaaagaagtagaactgaagatgtcaagattcacaatggctcaacgtga
aacaggaaaatactctattctatacaacaacaacttaaaagctgttgcaa
cccaaatatgacaacattaaccatacttttgatttagaacctcatatttt
cacagaatcaatccatccattcatccatttatgtatgtatgtatccatcc
atgtatctgtccacccatatgtctgtccatttatctatttaactactcag
aaattagctgtttatatacaaaactaggtttagacttttctaatctctca
ctttgcttaacatgctggcaaatgctggaaacgggctatcatctgactca
ccaaagttgagaaataagctgcaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_65617967_65619062
seq2: B6Ng01-199A21.b_46_1144

seq1  GAATTCCATGTCTCTTAAATGAGCCACTTTGGAAACACAGTATTGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCTCTTAAATGAGCCACTTTGGAAACACAGTATTGGACTT  50

seq1  CTGGACATTGCTTTTATTTCTCTAAAGGGGCTGTGGCCAGAGTATGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATTGCTTTTATTTCTCTAAAGGGGCTGTGGCCAGAGTATGGTGT  100

seq1  CTGGCCAATGTTATGTGTACTGCCCACATTAGAGATGCCCTGGCTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAATGTTATGTGTACTGCCCACATTAGAGATGCCCTGGCTCTAGG  150

seq1  GTTGACCCAGATTTGTGATTCCCAATAGACCCATCAAGTAGAATATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCCAGATTTGTGATTCCCAATAGACCCATCAAGTAGAATATTAAT  200

seq1  GATACCCAGAGCTAAGAACAGGGTTAGCCAAGTGTTCAGAACTTGTTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAGAGCTAAGAACAGGGTTAGCCAAGTGTTCAGAACTTGTTCGA  250

seq1  AAGAAGAAGACCAAGTCCTGAGGACTGTCTCACTTTGAAAGTTACGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGACCAAGTCCTGAGGACTGTCTCACTTTGAAAGTTACGGGAA  300

seq1  GCCCCAGGAGAAATGACATTTTCTTCTGTCCTCAGAGAAAATGCTCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGAGAAATGACATTTTCTTCTGTCCTCAGAGAAAATGCTCAACT  350

seq1  ATCACCCCAGATAACCCAAGTGCATTTCAAAAGCATTGGGCTTTCCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCCAGATAACCCAAGTGCATTTCAAAAGCATTGGGCTTTCCGACA  400

seq1  CAAATCTGGCAGTTAAATAGATCCGAACGGGAGCCTGGGGAAAGTCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGGCAGTTAAATAGATCCGAACGGGAGCCTGGGGAAAGTCACTA  450

seq1  CACTCAAGACTATTGGCCTTACCCTCACAGTCCTAAAGTGACCTTGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGACTATTGGCCTTACCCTCACAGTCCTAAAGTGACCTTGGAGT  500

seq1  TAAAACAGCCAGCCTTCCTGCTGCCCACTCTGCAGGTAAGGGCCAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGCCAGCCTTCCTGCTGCCCACTCTGCAGGTAAGGGCCAAGCCA  550

seq1  AGCAGTCACCGCTTGGGGGCCGAGCTTAGCGCTTGGGGGCGGAGCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACCGCTTGGGGGCCGAGCTTAGCGCTTGGGGGCGGAGCCTCCC  600

seq1  AGCGGCAACGCGCTGACGTCACGGGCGTGGGTCGGCCCACCGCGTCGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCAACGCGCTGACGTCACGGGCGTGGGTCGGCCCACCGCGTCGTCG  650

seq1  ACGGGGCGCGGATCACGGCCGGTGGTCGCTGTACCCGGTCGGCGTCCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGCGCGGATCACGGCCGGTGGTCGCTGTACCCGGTCGGCGTCCGCT  700

seq1  CTCTCGGCAATTCGTCCTCCGCCCCGACGAGGCGTCCGTGGCCGGGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGCAATTCGTCCTCCGCCCCGACGAGGCGTCCGTGGCCGGGCTTC  750

seq1  CGCAGTCATGCTGCGGTCGGCGCGGCTCGCGCTTCCCCTCTGAGTCCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCATGCTGCGGTCGGCGCGGCTCGCGCTTCCCCTCTGAGTCCCGG  800

seq1  GACGGCGGCGAGCGCGGCGAACTCGGGTCGCCATGCCTACCCGTGAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCGGCGAGCGCGGCGAACTCGGGTCGCCATGCCTACCCGTGAGTGT  850

seq1  CGGGCCAGGCCGGGCGGGCGGGCAGCGCCTCCAGGAAGCG-CCGGTCCGC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGGGCCAGGCCGGGCGGGCGGGCAGCGCCTCCAGGAAGCGCCCGGTCCGC  900

seq1  CCTGAGTTAGTTTCGCTTAGACTTCAGCGTCCCGTGGGCGGGGAGCGCGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTAGTTTCGCTTAGACTTCAGCGTCCCGTGGGCGGGGAGCGCGG  950

seq1  GATCTCTGTGCACCCTCGGGGAAACTGAGGCGGGAGCGTTACGGGAACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GATCTCTGTGCACCCTCGGGGAAACTGAGGCGGGAGCGTTACGGGGACTG  1000

seq1  ACGGCGGCCCGCGGTGACGGCGCGGTAACGGAG-ACCAGTGCGACCCGGG  1048
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  ACGGCGGCCCGCGGTGACGGCGCGGTAACGGAGAACTAGTGCGACCCGGG  1050

seq1  AAGCCCGGGCTGGTCCACTCGCCG--CGCGGGCCCACTCGACTGTGGCCC  1096
      ||||| || ||||| |||||| ||  |||||| |||||||||||||||||
seq2  AAGCCGGGCCTGGT-CACTCGTCGGCCGCGGGACCACTCGACTGTGGCCC  1099

seq1: chr15_65687039_65688163
seq2: B6Ng01-199A21.g_63_1189 (reverse)

seq1  TGGTTGCAGCTTA--TCTCAACTTT-GTGAGTCAGATGATAGCC--GTTC  45
      |||||||||||||  |||||||||| ||||||||||||||||||   |||
seq2  TGGTTGCAGCTTATTTCTCAACTTTGGTGAGTCAGATGATAGCCCGTTTC  50

seq1  CAGCATTTTGCCAGCATGTT-AGCAAGGTGAGAGATTTAGAAAAGTTCTT  94
      ||||| |||||||||||||| ||||| |||||||| ||||||||||   |
seq2  CAGCA-TTTGCCAGCATGTTAAGCAAAGTGAGAGA-TTAGAAAAGT--CT  96

seq1  AAACCTAGTTTTGTATATAAACAGCTAATTTCTGAGTAGTTAAATAGATA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGTTTTGTATATAAACAGCTAATTTCTGAGTAGTTAAATAGATA  146

seq1  AATGGACAGACATATGGGTGGACAGATACATGGATGGATACATACATACA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGACATATGGGTGGACAGATACATGGATGGATACATACATACA  196

seq1  TAAATGGATGAATGGATGGATTGATTCTGTGAAAATATGAGGTTCTAAAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGATGAATGGATGGATTGATTCTGTGAAAATATGAGGTTCTAAAT  246

seq1  CAAAAGTATGGTTAATGTTGTCATATTTGGGTTGCAACAGCTTTTAAGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTATGGTTAATGTTGTCATATTTGGGTTGCAACAGCTTTTAAGTT  296

seq1  GTTGTTGTATAGAATAGAGTATTTTCCTGTTTCACGTTGAGCCATTGTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTATAGAATAGAGTATTTTCCTGTTTCACGTTGAGCCATTGTGA  346

seq1  ATCTTGACATCTTCAGTTCTACTTCTTTGTTGCGTTAGAGCTAGAGGTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACATCTTCAGTTCTACTTCTTTGTTGCGTTAGAGCTAGAGGTGG  396

seq1  ATGGTTAATATGCCTCTGAATTATGTCATCTTTCAGCACCGTTTAACTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATATGCCTCTGAATTATGTCATCTTTCAGCACCGTTTAACTTT  446

seq1  CTTCAGTGGCCATTACAGTGACTGACATGATTTCATATCTATTTCAGAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGGCCATTACAGTGACTGACATGATTTCATATCTATTTCAGAGT  496

seq1  CCTGAGCGTAGTGTAATGGGAACATGCACCCTGAAAGCCTTGGTCGGAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCGTAGTGTAATGGGAACATGCACCCTGAAAGCCTTGGTCGGAGA  546

seq1  GCCTTGGTTTTTAAGAGAACTTGTAGCACATTTTGCTAAATGTAGGTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTTTTTAAGAGAACTTGTAGCACATTTTGCTAAATGTAGGTTTT  596

seq1  TGGTGCATTCTAACAGGTCATTCACTTAGAACTCATTTGCATATTTGAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTCTAACAGGTCATTCACTTAGAACTCATTTGCATATTTGAGG  646

seq1  CCTGGGTATTGTTAAAGTAATCAGACCCTTTGGGGAGCCACCCTTCCCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTATTGTTAAAGTAATCAGACCCTTTGGGGAGCCACCCTTCCCAG  696

seq1  GGCTCTGAACTAGGAGCAACTACTGAGCCAGCACACAGGGAAAAAAGAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAACTAGGAGCAACTACTGAGCCAGCACACAGGGAAAAAAGAGC  746

seq1  TCTTGAAAAGATTTCTAAAATAAGTCTGTATTATTTTGCCACATGCTCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAGATTTCTAAAATAAGTCTGTATTATTTTGCCACATGCTCTG  796

seq1  TTTCTTCATAGTATGTTTAAGTAACTGTAAGGCTTTGTTTTTCACTTCGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATAGTATGTTTAAGTAACTGTAAGGCTTTGTTTTTCACTTCGT  846

seq1  ATATTTTATTATCAGTCTTTTGATAGCTGATGATTCTTTAGTGTTATGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTATCAGTCTTTTGATAGCTGATGATTCTTTAGTGTTATGTG  896

seq1  AAAACAAAATGAGTATGAATGCAGAGGTAGACTTGTAGTGCTAAAAGGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATGAGTATGAATGCAGAGGTAGACTTGTAGTGCTAAAAGGTA  946

seq1  TTTTTTCAGTTTTGTTCTTAGATATTCTGTAAATGTTCACTGCAATGTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGTTTTGTTCTTAGATATTCTGTAAATGTTCACTGCAATGTCA  996

seq1  TAAGAAGATTTTTTATTTTTAATTTTGCTCTGTGTTTTTTCTTGTTTTCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGATTTTTTATTTTTAATTTTGCTCTGTGTTTTTTCTTGTTTTCA  1046

seq1  GGTTATTGAAACTCGAACTATGGAAGCCCCTTATTTTCTACCAGAGCATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGAAACTCGAACTATGGAAGCCCCTTATTTTCTACCAGAGCATA  1096

seq1  TTTTCCGAGATAAATGCATGTATGTGAATTC  1125
      |||||||||||||||||||||||||||||||
seq2  TTTTCCGAGATAAATGCATGTATGTGAATTC  1127