BAC Information

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BAC

Clone NameB6Ng01-199D15
Chromosome15 (Build37)
Map Location 89,232,761 - 89,366,103
singlet/doubletdoublet
Overlap gene1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b
Downstream geneAcr, Rabl2a, LOC676575, Syt10, Alg10b, Cpne8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199D15.bB6Ng01-199D15.g
ACCGA020615GA020616
length1,0421,082
definitionB6Ng01-199D15.b B6Ng01-199D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,232,761 - 89,233,448)(89,365,036 - 89,366,103)
sequence
gaattcttaaaaagctaaaaataaatcctctatatggctagttataccac
tgctgaacatttgcctaaaggttttgacatcttaacctatagatatcatc
tgctcagcacattcagtgctattctatttacaatatctaggatatggaaa
aacccaaatgcccttcaactgaagaatgcataatgaaaatgcggtacata
aacaaaatggaatactatttagctgtgaaataaaatcaggaaatttgcag
gtaagtggattatacccagtaaggtgatccagacccagaaagacaacaaa
taccacattttctcttatttgtgaatcctagctctgaacttttagatacg
agtatcttagtgttccattgctgtgaagagacactatgatcaaggcaact
tttataaaagaaggcgttttatttggggctcatggttcccaagggtagta
gagtccattatcttcatgatgggaagcagacaggcatggcactagaaaag
gagctgagagctttgcatcctgaacttcaaagtctacctcccttagcaca
cttcctccaacaaagccattcctcctctaacaaggccacacctcctctaa
caaggccacacctcctctaacaaggccacacctcctctaacaaggccaca
cctcctctaacaaagccattcctcctctaacaaggccacacctcctctaa
caaggtcacacctcctctaacaaggccacacctcctccaacaatgccact
cttcctaattcttcccaaacagtttcactgggtgggtaacaagcatccaa
acatatgtgcctatgggggctagtcacattcaaaccaccacagtaggtgt
atagccagaatagctacagataccagggacgtataaacaatgacaactca
gcactgagaaggcagatacaggtggatctgtatgagtttaaggccatcct
ggttctacacagagttacaggccagtaaagggctacatagtaagggccct
tgtctccaaaaaggggggggggggcttatatgtgaaaggggg
gaattcctatcaagtagatgctgaggtctccgtgtttgtcctcaggtccc
ctaactggtccttcatggccatctcatcagcttcctaagctgattctggg
tggtctcagcctgatctcctcgctcactgctatggctttgcttttttttt
ttttttagtaagtcctggattctgtgtctccaagccacagactcttctgt
gtgcagctttcttgtttgtttgtttgtttgtttgtttgtttcaataagtt
aaggaccatcgcaaacttccttgctgctgttgttcgcactatcctgctaa
tttcactaattctgtgacgtttcctgcctttatataactgaaacctttta
ctttaccctcatgctctttatctccagtccttttcaaaaaaaaatttttt
tttagattattttgagtgtttctgtctgcatgtatgtgtgcgtaaccatg
ttcatgcctggtgcctcagaggtgagaagggttggatggtggagacccac
tatgtgggtgctgggaaccaaacctgggtcctcttcaagagcaacaagcg
ctcttgagtgttgacccatcaccccggcccctccttttttttatgctaat
cccagattctatggttgcttctggcttttccaagtccatagcacctcttc
aagcctcacaggggcttcagaccacagcaccgcccttgagagccgccatc
aggaactggaagtacctggttcctatccctttggctttggtttcctgctt
tatttctgaaaccacaggattcctccttcctctacactatccgtaatttc
tatttttattcggaggtttatcgtagaaatcctgctcacgtcagcccctt
ttatcttggtaactgttttcaaaccaaccaaattcagtcaaggctatttg
cctggaatgtagcaactcagcctatgggtcaagacacggtccaacactga
gtccattaagcaaaagaacatggataagttcttgaaaggcaaggatacgg
gtttcctttttagaccaaaagcaagaagaacagtcttgggaattttgact
tagctctcaaccaacaaaagcatagaagtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89232761_89233448
seq2: B6Ng01-199D15.b_375_1072

seq1  GATACGAGTATCTTAGTGTTCCATTGCTGTGAAGAGACACTATGATCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGAGTATCTTAGTGTTCCATTGCTGTGAAGAGACACTATGATCAAG  50

seq1  GCAACTTTTATAAAAGAAGGCGTTTTATTTGGGGCTCATGGTTCCCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTTATAAAAGAAGGCGTTTTATTTGGGGCTCATGGTTCCCAAGG  100

seq1  GTAGTAGAGTCCATTATCTTCATGATGGGAAGCAGACAGGCATGGCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGAGTCCATTATCTTCATGATGGGAAGCAGACAGGCATGGCACTA  150

seq1  GAAAAGGAGCTGAGAGCTTTGCATCCTGAACTTCAAAGTCTACCTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGCTGAGAGCTTTGCATCCTGAACTTCAAAGTCTACCTCCCTT  200

seq1  AGCACACTTCCTCCAACAAAGCCATTCCTCCTCTAACAAGGCCACACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTTCCTCCAACAAAGCCATTCCTCCTCTAACAAGGCCACACCTC  250

seq1  CTCTAACAAGGCCACACCTCCTCTAACAAGGCCACACCTCCTCTAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACAAGGCCACACCTCCTCTAACAAGGCCACACCTCCTCTAACAAG  300

seq1  GCCACACCTCCTCTAACAAAGCCATTCCTCCTCTAACAAGGCCACACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCTCCTCTAACAAAGCCATTCCTCCTCTAACAAGGCCACACCTC  350

seq1  CTCTAACAAGGTCACACCTCCTCTAACAAGGCCACACCTCCTCCAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACAAGGTCACACCTCCTCTAACAAGGCCACACCTCCTCCAACAAT  400

seq1  GCCACTCTTCCTAATTCTTCCCAAACAGTTTCACTGGGTGGGTAACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTTCCTAATTCTTCCCAAACAGTTTCACTGGGTGGGTAACAAGC  450

seq1  ATCCAAACATATGTGCCTATGGGGGCTAGTCACATTCAAACCACCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACATATGTGCCTATGGGGGCTAGTCACATTCAAACCACCACAGT  500

seq1  AGGTGTATAGCCAGAATAGCTACAGATACCAGGGACGTATAAACAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATAGCCAGAATAGCTACAGATACCAGGGACGTATAAACAATGAC  550

seq1  AACTCAGCACTGAGAAGGCAGATACAGGTGGATCTGTATGAGTTTAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCACTGAGAAGGCAGATACAGGTGGATCTGTATGAGTTTAAGGC  600

seq1  CATCCTGG-TCTACACAGAGTTACAGGCCAGTAAA-GGCTACATAGTAAG  648
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  CATCCTGGTTCTACACAGAGTTACAGGCCAGTAAAGGGCTACATAGTAAG  650

seq1  G--CCCTGTCTC--AAAAGGGGGGGGGG----CATATGTGGAAGGGGG  688
      |  || ||||||  ||||||||||||||     ||||||| |||||||
seq2  GGCCCTTGTCTCCAAAAAGGGGGGGGGGGGCTTATATGTGAAAGGGGG  698

seq1: chr15_89365036_89366103
seq2: B6Ng01-199D15.g_62_1143 (reverse)

seq1  AACAC-TCTTTGCTTTTGTGGTTT--GAGCCTAGTC-AAATTCCC-AGAC  45
      ||||| ||| ||||||||| | ||  ||||  |||| |||||||| ||||
seq2  AACACTTCTATGCTTTTGTTGGTTGAGAGCTAAGTCAAAATTCCCAAGAC  50

seq1  TG-TCTTCTGGCTTTT-GTCCTAAAAGGAAACCCGTATCC-TGGCTCTCA  92
      || |||||| |||||| |||  |||||||||||||||||| || || |||
seq2  TGTTCTTCTTGCTTTTGGTCTAAAAAGGAAACCCGTATCCTTGCCTTTCA  100

seq1  GGA--CTATCCCTG-TCTTTTGCTT-ATGGACTCAGTGTT-GACCGTGTC  137
       ||   ||||| || |||||||||| |||||||||||||| |||||||||
seq2  AGAACTTATCCATGTTCTTTTGCTTAATGGACTCAGTGTTGGACCGTGTC  150

seq1  CTGA-CCATAGGCTGAGTTGCTACATTCCAGGC-AATTGCCTTGACTGAA  185
       ||| |||||||||||||||||||||||||||| ||| ||||||||||||
seq2  TTGACCCATAGGCTGAGTTGCTACATTCCAGGCAAATAGCCTTGACTGAA  200

seq1  GTTTGGTTTGGTTTGGAAAACAGTTACCAAGATAAAAGGGGCTGACGTGA  235
       ||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  -TTTGG-TTGGTTT-GAAAACAGTTACCAAGATAAAAGGGGCTGACGTGA  247

seq1  GCAGGATTTTCTACGATAAACCTCCGAAT-AAAATAGAAATTACGGATAG  284
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAGGA-TTTCTACGATAAACCTCCGAATAAAAATAGAAATTACGGATAG  296

seq1  TGTAGAGG-AGGAGGAATCCTGTGGTTTCAGAAATAAAGCAGGAAACCAA  333
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGAAGGAGGAATCCTGTGGTTTCAGAAATAAAGCAGGAAACCAA  346

seq1  AGCCAAAGGGATAGGAACCAGGTACTTCCAGTTCCTGATGGCGGCTCTCA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGGGATAGGAACCAGGTACTTCCAGTTCCTGATGGCGGCTCTCA  396

seq1  AGGGCGGTGCTGTGGTCTGAAGCCCCTGTGAGGCTTGAAGAGGTGCTATG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGTGCTGTGGTCTGAAGCCCCTGTGAGGCTTGAAGAGGTGCTATG  446

seq1  GACTTGGAAAAGCCAGAAGCAACCATAGAATCTGGGATTAGCAT-AAAAA  482
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACTTGGAAAAGCCAGAAGCAACCATAGAATCTGGGATTAGCATAAAAAA  496

seq1  AAGGAGGGGCCGGGGTGATGGGTCAACACTCAAGAGCGCTTGTTGCTCTT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGGCCGGGGTGATGGGTCAACACTCAAGAGCGCTTGTTGCTCTT  546

seq1  GAAGAGGACCCAGGTTTGGTTCCCAGCACCCACATAGTGGGTCTCCACCA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACCCAGGTTTGGTTCCCAGCACCCACATAGTGGGTCTCCACCA  596

seq1  TCCAACCCTTCTCACCTCTGAGGCACCAGGCATGAACATGGTTACGCACA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCTTCTCACCTCTGAGGCACCAGGCATGAACATGGTTACGCACA  646

seq1  CATACATGCAGACAGAAACACTCAAAATAATCTAAAAAAAAATTTTTTTT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCAGACAGAAACACTCAAAATAATCTAAAAAAAAATTTTTTTT  696

seq1  TGAAAAGGACTGGAGATAAAGAGCATGAGGGTAAAGTAAAAGGTTTCAGT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGACTGGAGATAAAGAGCATGAGGGTAAAGTAAAAGGTTTCAGT  746

seq1  TATATAAAGGCAGGAAACGTCACAGAATTAGTGAAATTAGCAGGATAGTG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGGCAGGAAACGTCACAGAATTAGTGAAATTAGCAGGATAGTG  796

seq1  CGAACAACAGCAGCAAGGAAGTTTGCGATGGTCCTTAACTTATTGAAACA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAACAGCAGCAAGGAAGTTTGCGATGGTCCTTAACTTATTGAAACA  846

seq1  AACAAACAAACAAACAAACAAACAAGAAAGCTGCACACAGAAGAGTCTGT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAACAAGAAAGCTGCACACAGAAGAGTCTGT  896

seq1  GGCTTGGAGACACAGAATCCAGGACTTACTAAAAAAAAAAAAAAAGCAAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAGACACAGAATCCAGGACTTACTAAAAAAAAAAAAAAAGCAAA  946

seq1  GCCATAGCAGTGAGCGAGGAGATCAGGCTGAGACCACCCAGAATCAGCTT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGCAGTGAGCGAGGAGATCAGGCTGAGACCACCCAGAATCAGCTT  996

seq1  AGGAAGCTGATGAGATGGCCATGAAGGACCAGTTAGGGGACCTGAGGACA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGATGAGATGGCCATGAAGGACCAGTTAGGGGACCTGAGGACA  1046

seq1  AACACGGAGACCTCAGCATCTACTTGATAGGAATTC  1068
      ||||||||||||||||||||||||||||||||||||
seq2  AACACGGAGACCTCAGCATCTACTTGATAGGAATTC  1082