BAC Information

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BAC

Clone NameB6Ng01-199I06
Chromosome5 (Build37)15 (Build37)
Map Location 135,955,268 - 135,955,901102,643,908 - 102,643,942
singlet/doubletsingletsinglet
Overlap geneHip1
Upstream geneClip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121
Downstream geneCcl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199I06.bB6Ng01-199I06.g
ACCGA020829GA020830
length635359
definitionB6Ng01-199I06.b B6Ng01-199I06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,955,268 - 135,955,901)(102,643,908 - 102,643,942)
sequence
gaattcatcagtttcagggttgacatttgacttcctcaaagcaaagccac
caagaactctcacttctgtgtcttcagggccacggggactgcctgcttcc
ttaggggaggggagaggaagacctagaagggtagggtagggatgaggtgg
gcactgcacagtgcctgggcagggcaacccccagctggactccccccccc
ctcctggagggtgggtctgcaggttatcagctcagggtggcaaccccacc
agatccatcttccaccctctctcctcccgcctccctgtttctcacagtct
cacatagctcctgctggcctcaaattccctggacactttccaagtgctgg
acacaggtatgcaccaccatgtccagtttcatgcggtgtgagggatagaa
cccatggcctcagacgtgcaggcaggccaagcaaccaaccatcaagccac
atgcccagctcagaacgcgcttatcttaactaaagcacacttctggcagg
atggctcagtggggaaaggggattgcaggcaaatcttgatgccatgattt
tgatccccagagtctacatgatggaaggagagaactgactccccaaagct
gtgcttagacttcaaggcacatcccacacacatgt
caggtgtgccccaccacacccagattacctggtgctggaggtaaatctgg
agctctggctaggaaagcactccgtcaactgagccacatacccaggctca
caactaaaaacacttaaaaaaaagacttatttgtatcttatgtgtatgat
attttacctgcatgtatgtctgtgtgcctcaggtgtcagtagcttctctg
ggaatagacctacagtcatctgtgagcttccacgagggtgctgggaattg
acactaggttcttcctctggaagaacatttggtgttcatgagcactgagc
catctttctagacactccacaatcttttccgtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135955268_135955901
seq2: B6Ng01-199I06.b_46_680

seq1  GAATTCATCAGTTTCAGGGTTGACATTTGACTTCCTCAAAGCAAAGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTTCAGGGTTGACATTTGACTTCCTCAAAGCAAAGCCAC  50

seq1  CAAGAACTCTCACTTCTGTGTCTTCAGGGCCACGGGGACTGCCTGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTCTCACTTCTGTGTCTTCAGGGCCACGGGGACTGCCTGCTTCC  100

seq1  TTAGGGGAGGGGAGAGGAAGACCTAGAAGGGTAGGGTAGGGATGAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAGGGGAGAGGAAGACCTAGAAGGGTAGGGTAGGGATGAGGTGG  150

seq1  GCACTGCACAGTGCCTGGGCAGGGCAACCCCCAGCTGGACTCCCCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCACAGTGCCTGGGCAGGGCAACCCCCAGCTGGACTCCCCCCCCC  200

seq1  CTCCTGGAGGGTGGGTCTGCAGGTTATCAGCTCAGGGTGGCAACCCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGAGGGTGGGTCTGCAGGTTATCAGCTCAGGGTGGCAACCCCACC  250

seq1  AGATCCATCTTCCACCCTCTCTCCTCCCGCCTCCCTGTTTCTCACAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATCTTCCACCCTCTCTCCTCCCGCCTCCCTGTTTCTCACAGTCT  300

seq1  CACATAGCTCCTGCTGGCCTCAAATTCCCTGGACACTTTCCAAGTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCTCCTGCTGGCCTCAAATTCCCTGGACACTTTCCAAGTGCTGG  350

seq1  ACACAGGTATGCACCACCATGTCCAGTTTCATGCGGTGTGAGGGATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTATGCACCACCATGTCCAGTTTCATGCGGTGTGAGGGATAGAA  400

seq1  CCCATGGCCTCAGACGTGCAGGCAGGCCAAGCAACCAACCATCAAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCCTCAGACGTGCAGGCAGGCCAAGCAACCAACCATCAAGCCAC  450

seq1  ATGCCCAGCTCAGAACGCGCTTATCTTAACTAAAGCACACTTCTGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGCTCAGAACGCGCTTATCTTAACTAAAGCACACTTCTGGCAGG  500

seq1  ATGGCTCAGTGGGGAAAGGGGATTGCAGGCAAATCTTGATGCCATGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGCTCAGTGGGGAAAGGGGATTGCAGGCAAATCTTGATGCCATGATTT  550

seq1  TGATCCCCAGAGTCTACATGATGGAAGGAGAGAACTGACTCCCCAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCAGAGTCTACATGATGGAAGGAGAGAACTGACTCCCCAAAGCT  600

seq1  GTGCTTAGACTTCAAGGCACA-CCCACACACATGT  634
      ||||||||||||||||||||| |||||||||||||
seq2  GTGCTTAGACTTCAAGGCACATCCCACACACATGT  635

seq1: chr15_102643908_102643942
seq2: B6Ng01-199I06.g_397_431 (reverse)

seq1  CACACACACACACACACACACACACACACGGAAAA  35
      |||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACGGAAAA  35