BAC Information

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BAC

Clone NameB6Ng01-199P17
Chromosome15 (Build37)
Map Location 6,667,214 - 6,824,850
singlet/doubletdoublet
Overlap gene4921505C17Rik, Osmr
Upstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511
Downstream geneLifr, Egflam, Gdnf, Wdr70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199P17.bB6Ng01-199P17.g
ACCGA021169GA021170
length3931,013
definitionB6Ng01-199P17.b B6Ng01-199P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,667,214 - 6,667,612)(6,823,828 - 6,824,850)
sequence
agtgcaatttcatgtgtttctcataatgaataaagagtgaagaggcacag
gagctgtaaacagaggaggttgccaagtcacttagttacttaaaaggagc
agtttgccagagaaaaggatatttaactgctttaaatgtgggcatgtatg
tattttttcagcagttacatagatctagaaagtcacatcttgaaatagta
gtgctaattatttccgcacttggttcatccctggtgtattaaaactttta
attgccctgtttttttttttttcccactcataatcctctaatgtactctt
taacattgtataatccccacctgcctcctgctagtggggaggggggagga
aaaagaagtgaatggagagaaattttagttgaggaaacttttt

gaattcaggtctgtagctgaaggaggcgtggccacacagggcgtttccag
gtcctgtagaggaagcacagttcatagatctctgttctaacacgtctgtc
ttgctctgaacgccgaaagtcaactcgatcacaagtttgatccaacagtt
tgacatttcaggtaattttcagacggagcgctggggttggatctcccaag
caacacaattggctctgtgcaggacacctggcacggggcactgggtcgca
gctcgtcccctctccctccaggaacaacgatgctcaaggaccagcttttc
ctcccaggcctctcccacttcccttctcaccggtgctgcccgcccggtcc
cgggaaccgcgcccgtcgcagggtcccgatcgttcccccctacatcccct
tgggaccaggagcaaattcctgtgggtcccaggagtgccaaaagtgctca
gcgagacgggaaattgcaacagtacttggcccctcggccctcccccggcg
ctttcccgtaactcccgcccctggacacttgccccgtagttgattcatag
ctggggcgcggggccgcctccacacgcctggacagacgtccgcgcccgtt
cccctgtgaggccgaggaccggcaaggctccggagcaggtcgccaggcgg
gtgagtacgggacccgtgtgcccgcgctgccgcctccatccactttccga
cgggcgagccgagagctttgctgccccgcgcctctgccctgtcctgcgtt
agtttttgcctcccgagactgcactctcaggagccgcaagaggttgtgcc
agaaaagtgccacctaattggtgggcaactctaaaagactagatactctc
agcgtgcacgtcgctgggacaccagtccaggcctgctttgagttcaccgt
cccctggcctctcactcagcagctggggaaacacttgctgagttagaact
ccattgggcaattgattctctcacaataccccgtgggagtgggagttgat
gttccccagcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_6667214_6667612
seq2: B6Ng01-199P17.b_52_450

seq1  GAATTCAGTGCAATTTCATGTGTTTCTCATAATGAATAAAGAGTGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCAATTTCATGTGTTTCTCATAATGAATAAAGAGTGAAGAG  50

seq1  GCACAGGAGCTGTAAACAGAGGAGGTTGCCAAGTCACTTAGTTACTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGAGCTGTAAACAGAGGAGGTTGCCAAGTCACTTAGTTACTTAAA  100

seq1  AGGAGCAGTTTGCCAGAGAAAAGGATATTTAACTGCTTTAAATGTGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGTTTGCCAGAGAAAAGGATATTTAACTGCTTTAAATGTGGGCA  150

seq1  TGTATGTATTTTTTCAGCAGTTACATAGATCTAGAAAGTCACATCTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATTTTTTCAGCAGTTACATAGATCTAGAAAGTCACATCTTGAA  200

seq1  ATAGTAGTGCTAATTATTTCCGCACTTGGTTCATCCCTGGTGTATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGTGCTAATTATTTCCGCACTTGGTTCATCCCTGGTGTATTAAAA  250

seq1  CTTTTAATTGCCCTGTTTTTTTTTTTTTCCCACTCATAATCCTCTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTGCCCTGTTTTTTTTTTTTTCCCACTCATAATCCTCTAATGT  300

seq1  ACTCTTTAACATTGTATAATCCCCACCTGCCTCCTGCTAGTGGGGAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAACATTGTATAATCCCCACCTGCCTCCTGCTAGTGGGGAGGGG  350

seq1  GGAGGAAAAAGAAGTGAATGGAGAGAAACTTAAGTTGAGGAAACATTTT  399
      |||||||||||||||||||||||||||| || |||||||||||| ||||
seq2  GGAGGAAAAAGAAGTGAATGGAGAGAAATTTTAGTTGAGGAAACTTTTT  399


seq1: chr15_6823828_6824850
seq2: B6Ng01-199P17.g_64_1076 (reverse)

seq1  GAGGCTGGGGGAAACCATCAACTCCCACTCCCACGGGGTATTGTGAGAGA  50
      ||||||||||   | |||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGG---AACATCAACTCCCACTCCCACGGGGTATTGTGAGAGA  47

seq1  AACCAAATTGGCCCAAATGGGAGTTCTAACTCAGCAAGTGTTTCCCCAGC  100
      | |  |||| ||||||   |||||||||||||||||||||||||||||||
seq2  ATC--AATT-GCCCAA--TGGAGTTCTAACTCAGCAAGTGTTTCCCCAGC  92

seq1  TGCTTGAGTGAGAGGCCAGGGGACGGTGAACCTCAAAGCAGGCCTGGACT  150
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGC-TGAGTGAGAGGCCAGGGGACGGTGAA-CTCAAAGCAGGCCTGGACT  140

seq1  GGTGTCCCAGCGACGTGCACGCTGAGAGTATCTAGTCTTTTAGAGTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCAGCGACGTGCACGCTGAGAGTATCTAGTCTTTTAGAGTTGCC  190

seq1  CACCAATTAGGTGGCACTTTTCTGGCACAACCTCTTGCGGCTCCTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTAGGTGGCACTTTTCTGGCACAACCTCTTGCGGCTCCTGAGAG  240

seq1  TGCAGTCTCGGGAGGCAAAAACTAACGCAGGACAGGGCAGAGGCGCGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTCGGGAGGCAAAAACTAACGCAGGACAGGGCAGAGGCGCGGGG  290

seq1  CAGCAAAGCTCTCGGCTCGCCCGTCGGAAAGTGGATGGAGGCGGCAGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGCTCTCGGCTCGCCCGTCGGAAAGTGGATGGAGGCGGCAGCGC  340

seq1  GGGCACACGGGTCCCGTACTCACCCGCCTGGCGACCTGCTCCGGAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACGGGTCCCGTACTCACCCGCCTGGCGACCTGCTCCGGAGCCTT  390

seq1  GCCGGTCCTCGGCCTCACAGGGGAACGGGCGCGGACGTCTGTCCAGGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTCCTCGGCCTCACAGGGGAACGGGCGCGGACGTCTGTCCAGGCGT  440

seq1  GTGGAGGCGGCCCCGCGCCCCAGCTATGAATCAACTACGGGGCAAGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCGGCCCCGCGCCCCAGCTATGAATCAACTACGGGGCAAGTGTC  490

seq1  CAGGGGCGGGAGTTACGGGAAAGCGCCGGGGGAGGGCCGAGGGGCCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCGGGAGTTACGGGAAAGCGCCGGGGGAGGGCCGAGGGGCCAAGT  540

seq1  ACTGTTGCAATTTCCCGTCTCGCTGAGCACTTTTGGCACTCCTGGGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCAATTTCCCGTCTCGCTGAGCACTTTTGGCACTCCTGGGACCC  590

seq1  ACAGGAATTTGCTCCTGGTCCCAAGGGGATGTAGGGGGGAACGATCGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATTTGCTCCTGGTCCCAAGGGGATGTAGGGGGGAACGATCGGGA  640

seq1  CCCTGCGACGGGCGCGGTTCCCGGGACCGGGCGGGCAGCACCGGTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCGACGGGCGCGGTTCCCGGGACCGGGCGGGCAGCACCGGTGAGAA  690

seq1  GGGAAGTGGGAGAGGCCTGGGAGGAAAAGCTGGTCCTTGAGCATCGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGGGAGAGGCCTGGGAGGAAAAGCTGGTCCTTGAGCATCGTTGT  740

seq1  TCCTGGAGGGAGAGGGGACGAGCTGCGACCCAGTGCCCCGTGCCAGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGGGAGAGGGGACGAGCTGCGACCCAGTGCCCCGTGCCAGGTGT  790

seq1  CCTGCACAGAGCCAATTGTGTTGCTTGGGAGATCCAACCCCAGCGCTCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACAGAGCCAATTGTGTTGCTTGGGAGATCCAACCCCAGCGCTCCG  840

seq1  TCTGAAAATTACCTGAAATGTCAAACTGTTGGATCAAACTTGTGATCGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATTACCTGAAATGTCAAACTGTTGGATCAAACTTGTGATCGAG  890

seq1  TTGACTTTCGGCGTTCAGAGCAAGACAGACGTGTTAGAACAGAGATCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTCGGCGTTCAGAGCAAGACAGACGTGTTAGAACAGAGATCTAT  940

seq1  GAACTGTGCTTCCTCTACAGGACCTGGAAACGCCCTGTGTGGCCACGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGCTTCCTCTACAGGACCTGGAAACGCCCTGTGTGGCCACGCCT  990

seq1  CCTTCAGCTACAGACCTGAATTC  1023
      |||||||||||||||||||||||
seq2  CCTTCAGCTACAGACCTGAATTC  1013


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