BAC Information

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BAC

Clone NameB6Ng01-201A12
Chromosome15 (Build37)
Map Location 80,907,295 - 80,990,398
singlet/doubletdoublet
Overlap geneMkl1
Upstream geneRpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3
Downstream geneLOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201A12.bB6Ng01-201A12.g
ACCGA021919GA021920
length1451,128
definitionB6Ng01-201A12.b B6Ng01-201A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,907,295 - 80,907,439)(80,989,257 - 80,990,398)
sequence
aatgtcaacttgaactacacagtcagacactgacttggggacggggcggt
tagtaggagagcaactggctccttgcgtgtggaaggccctggtctgctag
atcccacaatgcaggaagggaaggggagagggaagaggaagggga
gaattcctctctgtaccggaacttccatctccctctctcctgcctaagct
aatgggccaacaacattttattgacaggtgatgcttccatacgttgtaga
agagattggagcagctcatgacagcaagagtatatgatagattgtattca
taacgcagtgtgccaagaatggagtgagcttcagggacaagtccatccct
agtgatgcacttctgcttgctggaccctgtttcctaaagatcctagcttc
ctgaaatagtaaaccagctggggatcaagccatctcacaattcagtccct
gggttgggcagggtggtgcttgcctttcattccagcactcaggaggccct
gttgaggctacatagtaaggctctgcctccaaaaccaaagagcctcaagg
ccagctttggctgaccctctctccaaaacaaaacctgctggccttgtaat
gtgctctgatcccgtttttctgttataaagtaaccctgctcggcaggctg
tttccctgaccgcagatgaatgggttggatacgttaggcccagaggcttt
agttataaaagtttgaccagccccctcttggtcatcatttttctaaggct
gatgaaaataagagaagaactttgcttatattactgctcatataaaaata
gcattcacttcattatgaagtgaagtagactgggttctgaagaagcttag
tcagcgagtgactaaaacaacctttccacgagatggtctcacggtcaaaa
cagttccaaaatacattcctgacagctttcaactaaaatccaggatctca
tctggagattagtgtaagagccccaccattagcttgcctctcgtttcttt
ctgttcaggtggtttgtccaggtacatatagcactgtttaggagcaggcc
tcttcagtcacagtgtccagtgaaattctgttagtcttagtcattctcct
ccgagcccttttcctgtgaataaaagatggagctcatacctttccaccag
ctctggagagttattttagctggcatgtgagacttggcagcttgatattg
tggacagaccagcccattagaacatttttaggttcagggccacagctgtg
tttatgagcattggccatgttaatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80907295_80907439
seq2: B6Ng01-201A12.b_48_192

seq1  AATGTCAACTTGAACTACACAGTCAGACACTGACTTGGGGACGGGGCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAACTTGAACTACACAGTCAGACACTGACTTGGGGACGGGGCGGT  50

seq1  TAGTAGGAGAGCAACTGGCTCCTTGCGTGTGGAAGGCCCTGGTCTGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGAGAGCAACTGGCTCCTTGCGTGTGGAAGGCCCTGGTCTGCTAG  100

seq1  ATCCCACAATGCAGGAAGGGAAGGGGAGAGGGAAGAGGAAGGGGA  145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAATGCAGGAAGGGAAGGGGAGAGGGAAGAGGAAGGGGA  145

seq1: chr15_80989257_80990398
seq2: B6Ng01-201A12.g_63_1190 (reverse)

seq1  ATTCATTTTATACAT-GCCAATGCTCATTTAAAACACAGCTTGTGGCCTG  49
      |||||||    |||| ||||||||||||   ||||||||| |||||||  
seq2  ATTCATT---AACATGGCCAATGCTCAT---AAACACAGC-TGTGGCCCT  43

seq1  GAACTTTAAAAATGTTCTAATGTGCTGGTCTGTCCACATATTAATCAAGC  99
      ||||  |||||||||||||||| ||||||||||||||| ||  |||||| 
seq2  GAAC-CTAAAAATGTTCTAATGGGCTGGTCTGTCCACA-AT--ATCAAG-  88

seq1  CTGCCAGGTCTCAACATGCCAAGCTTAAAATACTCTCCAGAGCTTGTGGA  149
      |||||| ||||| ||||||| |||| |||  ||||||||||||| |||||
seq2  CTGCCAAGTCTC-ACATGCC-AGCTAAAATAACTCTCCAGAGCTGGTGGA  136

seq1  AAGGTATGAGCTCCATCTTTTATTCACAGGAAAAGGGCTCGGAGGAGAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATGAGCTCCATCTTTTATTCACAGGAAAAGGGCTCGGAGGAGAAT  186

seq1  GACTAAGACTAACAGAATTTCACTGGACACTGTGACTGAAGAGGCCTGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGACTAACAGAATTTCACTGGACACTGTGACTGAAGAGGCCTGCT  236

seq1  CCTAAACAGTGCTATATGTACCTGGACAAAACCACCTGAACAGAAAGAAA  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTAAACAGTGCTATATGTACCTGGAC-AAACCACCTGAACAGAAAGAAA  285

seq1  CGAGAGGCAAGCTAATGGTGGGGCTCTTACACTAATCTCCAGATGAGATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGGCAAGCTAATGGTGGGGCTCTTACACTAATCTCCAGATGAGATC  335

seq1  CTGGATTTTAGTTGAAAGCTGTCAGGAATGTATTTTGGAACTGTTTTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTTAGTTGAAAGCTGTCAGGAATGTATTTTGGAACTGTTTTGAC  385

seq1  CGTGAGACCATCTCGTGGAAAGGTTGTTTTAGTCACTCGCTGACTAAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGACCATCTCGTGGAAAGGTTGTTTTAGTCACTCGCTGACTAAGCT  435

seq1  TCTTCAGAACCCAGTCTACTTCACTTCATAATGAAGTGAATGCTATTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAACCCAGTCTACTTCACTTCATAATGAAGTGAATGCTATTTTT  485

seq1  ATATGAGCAGTAATATAAGCAAAGTTCTTCTCTTATTTTCATCAGCCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGCAGTAATATAAGCAAAGTTCTTCTCTTATTTTCATCAGCCTTA  535

seq1  GAAAAATGATGACCAAGAGGGGGCTGGTCAAACTTTTATAACTAAAGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGATGACCAAGAGGGGGCTGGTCAAACTTTTATAACTAAAGCCT  585

seq1  CTGGGCCTAACGTATCCAACCCATTCATCTGCGGTCAGGGAAACAGCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTAACGTATCCAACCCATTCATCTGCGGTCAGGGAAACAGCCTG  635

seq1  CCGAGCAGGGTTACTTTATAACAGAAAAACGGGATCAGAGCACATTACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAGGGTTACTTTATAACAGAAAAACGGGATCAGAGCACATTACAA  685

seq1  GGCCAGCAGGTTTTGTTTTGGAGAGAGGGTCAGCCAAAGCTGGCCTTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAGGTTTTGTTTTGGAGAGAGGGTCAGCCAAAGCTGGCCTTGAG  735

seq1  GCTCTTTGGTTTTGGAGGCAGAGCCTTACTATGTAGCCTCAACAGGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGGTTTTGGAGGCAGAGCCTTACTATGTAGCCTCAACAGGGCCT  785

seq1  CCTGAGTGCTGGAATGAAAGGCAAGCACCACCCTGCCCAACCCAGGGACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGCTGGAATGAAAGGCAAGCACCACCCTGCCCAACCCAGGGACT  835

seq1  GAATTGTGAGATGGCTTGATCCCCAGCTGGTTTACTATTTCAGGAAGCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGAGATGGCTTGATCCCCAGCTGGTTTACTATTTCAGGAAGCTA  885

seq1  GGATCTTTAGGAAACAGGGTCCAGCAAGCAGAAGTGCATCACTAGGGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTAGGAAACAGGGTCCAGCAAGCAGAAGTGCATCACTAGGGATG  935

seq1  GACTTGTCCCTGAAGCTCACTCCATTCTTGGCACACTGCGTTATGAATAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCCCTGAAGCTCACTCCATTCTTGGCACACTGCGTTATGAATAC  985

seq1  AATCTATCATATACTCTTGCTGTCATGAGCTGCTCCAATCTCTTCTACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCATATACTCTTGCTGTCATGAGCTGCTCCAATCTCTTCTACAA  1035

seq1  CGTATGGAAGCATCACCTGTCAATAAAATGTTGTTGGCCCATTAGCTTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGGAAGCATCACCTGTCAATAAAATGTTGTTGGCCCATTAGCTTAG  1085

seq1  GCAGGAGAGAGGGAGATGGAAGTTCCGGTACAGAGAGGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGAGGGAGATGGAAGTTCCGGTACAGAGAGGAATTC  1128