BAC Information

Click to search

BAC

Clone NameB6Ng01-201A15
Chromosome15 (Build37)
Map Location 15,333,286 - 15,334,475
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674819, LOC100040024, LOC100040033, LOC100040046
Downstream geneEG239341, LOC100040087, LOC624183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201A15.bB6Ng01-201A15.g
ACCGA021925GA021926
length1,172988
definitionB6Ng01-201A15.b B6Ng01-201A15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgaaccccatttttaatagggttatttgattc
tctggaaactaacctcttgagttctttaaatttattggatattaaccctc
tataggatgtaggattgataaagatcttttcccaatctcttggttgatgt
tttgtcctattcacagtgtcctttgccttaaagaagctttgcaattttat
gatgttccatttgtcagttctttatcttagagcataagctattgatattc
tgttcaagaaaatttcccctctgctcatgtgttcaaggctcttcctcact
ttcttttatattagtttcagtgtatctggttttattgaagttccttgatc
agtttggaattggctttgtacaaggtggtaagaatggattgatttacatt
actctacatgctaaccagcagttgaaccagctccatttgttgaaaatgct
gttttgttccccactagaaaaacatagatcacagaaatatgctacaaaat
agtgataattttcaataaggcattatttaaatatattaataattatacaa
aatattcttcaactcaaacttatgatttaatagaaatattttaaaatttt
ttcttgttttgagtgtatcataatttgtttatataaatatcacaatacat
gatatagaatattagatataatatatacatatatttatgtgttaatttca
gatgaaaataattggttaatgttttatattagaagtacttaagacttgca
aaacaagtaatttttagactttacatctaagtatatttcttacttgtaca
gatgctataattaagagttttaattatattcaattagtcacgaattctat
agtaaattgtagaaattaggaaatattaaatatgtaggttttggattgta
agaaaaattgtcatgttattattcagatgaacattgtattgtgaaatact
caattttatttcacaatacattaggtcacttgttttttttactctgacta
aacatctcattccaaaggacatttttaggatgatattcattctgtatgta
catcaggtagtactactaacacttctggaacaaaacttttcaacctactg
ttcagaatggttacaattttgggatcttgtcggataagttccagaccact
tcgatcaggtattgtcaatgct

gaattccaggacaaccagggctatacagagaaacactgtcttggaaaaaa
aaatctgacccataattgttcctgtctaaaagaactgcagagatggaaat
ggagaggagcatcgggagaagaagatccagtgacagacccaaagggtgat
ccagctcaaggggaggccccaagacctggcactattgcagaggctatgga
gcggtcacaaaaatggatctatcatgactgccttctgaaagacagctgaa
cgtcagatgcagatatttgtgaccaaacgacagacagaagctgctgaccc
ctgttgttgaattaggtaaaggctggaagaagctgaggaggagggtgacc
ctgtaggaggaccagcagtctcaattaacctggaccccagagatctctcg
aacactggaccaccaaccaggcagcatacaccaggtgatatgaggccccc
aacacatatatatcagaggactgctgaggtctgggttcagtcagagaaga
tgcaccaaaccctcaagagattggaggccccagatggtttagaggtgtgg
ttgcatggcttcaactccctctttctctttagagaagtggagcctcccat
agatatcaactagacttggtatatcaagttgcagtaaaactagaaacatt
atctcctattgaggttagacaaggcattgctagttagggaaatggaatcc
aaaagtagagagcagactgagagatatcccctgatcttgctgttaagagg
cccatgtgaagtccaagctgcacacctgttacttatatgtactgagacta
ggtccatttcatgcatacactctggctttgtgcctctatgtacctaggac
agttgtgtctgtgtgttttcttgtggtgtccttgatatctctggttccta
ctgtattttctttccctcttccatgcgattcccttaagttctgcctaatg
tgtgagtgtaggtcttctgcatctgtttcatcagcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_15333286_15334475
seq2: B6Ng01-201A15.b_45_1216 (reverse)

seq1  AGCATTGACAATAAACTGTAATTTCTGGAGTTGTCTGGAAACTTATCAGA  50
      |||||||||||| | |||  ||    | ||| |||||| |||||||| ||
seq2  AGCATTGACAAT-ACCTG--AT---CGAAGTGGTCTGG-AACTTATCCGA  43

seq1  CAAGATCCCCAAAATTGTAACCCTTTCCTG-ACAGTAGGGTTTGAAAGTT  99
      |||||| ||||||||||||||| ||  ||| |||||| ||||  ||||||
seq2  CAAGAT-CCCAAAATTGTAACCATT--CTGAACAGTA-GGTTGAAAAGTT  89

seq1  TTTGTCTAG-AGTGTTTAGTAGTACTACTTGATGTTACATACAG-ATG-A  146
      ||  || || |||| ||||||||||||| ||||| ||||||||| ||| |
seq2  TTGTTCCAGAAGTG-TTAGTAGTACTACCTGATG-TACATACAGAATGAA  137

seq1  TATCCATTCCTAAAAATGTCCTTTGAAATGGAGATGTTTAAGTTCAGAGT  196
      ||||   |||||||||||||||||| ||| ||||||||||   |||||||
seq2  TATC--ATCCTAAAAATGTCCTTTGGAAT-GAGATGTTTA--GTCAGAGT  182

seq1  TAAAAAAAAACAAGTGACCTAATGTATTTGTGAAATAAAATTGAGTATTT  246
        |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  --AAAAAAAACAAGTGACCTAATGTA-TTGTGAAATAAAATTGAGTATTT  229

seq1  CACAATACAATGTTTCATCTGAATAATAACATGACAATTTTTCTTACAAT  296
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACAATACAATG-TTCATCTGAATAATAACATGACAATTTTTCTTACAAT  278

seq1  CCAAAACCTACATATTTAATATTTCCTAATTTCTACAATTTACTATAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCTACATATTTAATATTTCCTAATTTCTACAATTTACTATAGAA  328

seq1  TTCGTGACTAATTGAATATAATTAAAACTCTTAATTATAGCATCTGTACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGACTAATTGAATATAATTAAAACTCTTAATTATAGCATCTGTACA  378

seq1  AGTAAGAAATATACTTAGATGTAAAGTCTAAAAATTACTTGTTTTGCAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAATATACTTAGATGTAAAGTCTAAAAATTACTTGTTTTGCAAG  428

seq1  TCTTAAGTACTTCTAATATAAAACATTAACCAATTATTTTCATCTGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTACTTCTAATATAAAACATTAACCAATTATTTTCATCTGAAAT  478

seq1  TAACACATAAATATATGTATATATTATATCTAATATTCTATATCATGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATAAATATATGTATATATTATATCTAATATTCTATATCATGTAT  528

seq1  TGTGATATTTATATAAACAAATTATGATACACTCAAAACAAGAAAAAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATTTATATAAACAAATTATGATACACTCAAAACAAGAAAAAATT  578

seq1  TTAAAATATTTCTATTAAATCATAAGTTTGAGTTGAAGAATATTTTGTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTTCTATTAAATCATAAGTTTGAGTTGAAGAATATTTTGTAT  628

seq1  AATTATTAATATATTTAAATAATGCCTTATTGAAAATTATCACTATTTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAATATATTTAAATAATGCCTTATTGAAAATTATCACTATTTTG  678

seq1  TAGCATATTTCTGTGATCTATGTTTTTCTAGTGGGGAACAAAACAGCATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATTTCTGTGATCTATGTTTTTCTAGTGGGGAACAAAACAGCATT  728

seq1  TTCAACAAATGGAGCTGGTTCAACTGCTGGTTAGCATGTAGAGTAATGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAATGGAGCTGGTTCAACTGCTGGTTAGCATGTAGAGTAATGTA  778

seq1  AATCAATCCATTCTTACCACCTTGTACAAAGCCAATTCCAAACTGATCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCCATTCTTACCACCTTGTACAAAGCCAATTCCAAACTGATCAA  828

seq1  GGAACTTCAATAAAACCAGATACACTGAAACTAATATAAAAGAAAGTGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCAATAAAACCAGATACACTGAAACTAATATAAAAGAAAGTGAG  878

seq1  GAAGAGCCTTGAACACATGAGCAGAGGGGAAATTTTCTTGAACAGAATAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCTTGAACACATGAGCAGAGGGGAAATTTTCTTGAACAGAATAT  928

seq1  CAATAGCTTATGCTCTAAGATAAAGAACTGACAAATGGAACATCATAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTTATGCTCTAAGATAAAGAACTGACAAATGGAACATCATAAAA  978

seq1  TTGCAAAGCTTCTTTAAGGCAAAGGACACTGTGAATAGGACAAAACATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGCTTCTTTAAGGCAAAGGACACTGTGAATAGGACAAAACATCA  1028

seq1  ACCAAGAGATTGGGAAAAGATCTTTATCAATCCTACATCCTATAGAGGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGATTGGGAAAAGATCTTTATCAATCCTACATCCTATAGAGGGT  1078

seq1  TAATATCCAATAAATTTAAAGAACTCAAGAGGTTAGTTTCCAGAGAATCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAATAAATTTAAAGAACTCAAGAGGTTAGTTTCCAGAGAATCA  1128

seq1  AATAACCCTATTAAAAATGGGGTTCAGAGCTAAACAAAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCTATTAAAAATGGGGTTCAGAGCTAAACAAAGAATTC  1172


| Home | SequenceCutter | Blast | Download |