BAC Information

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BAC

Clone NameB6Ng01-201P13
Chromosome15 (Build37)
Map Location 78,637,686 - 78,846,277
singlet/doubletdoublet
Overlap geneLOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp
Upstream geneMyh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10
Downstream geneH1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201P13.bB6Ng01-201P13.g
ACCGA022595GA022596
length575737
definitionB6Ng01-201P13.b B6Ng01-201P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,637,686 - 78,638,265)(78,845,543 - 78,846,277)
sequence
cagagaaaggtcctggacctggatggtctggctgagtcagctagaaaggg
aggggtggaagaagggatgtggggacctgcctgtgagtcactgcccccag
gggctggcagggttcctggtgctgcctgccctacctggtatcacgaaggt
ctggatttaaagcccagcccccatcccacctcctctgtgacctgggctaa
acagtaggcaacaatggtgactctgaggtagtgcttagcacaaagtccat
gaccatttatataccaacgcattatgtatgtgcaccgtgtaggatcaacc
agctcagagcctcagatcagtgacacaaaccacaggtcggggacctcctg
tcatttgctaagaactcacaggtttcctgaggttgcatgcacaggtgctt
gggctcaagtgcatgtttgtaggtatgtgactgtgacctcccgtcctgtc
tcacctctctgtaccctgccccatctgatgccctgaagaccctgagagaa
aagccctcctccgcacccacttctgaagaaaccctcacctctgctcaggg
gcatcagaaaagcccagctgaggag
gaattcagaaacgcaactgttaccactgtcctccagctagaagcagttaa
gtagagcaaggcctctcctagtgtgagcacctgcaggagcaggcagcccg
atccacagcaggactgggatgctctaggccacacactgggcctggctgct
gtcaagagacaggtctacttggtccccaaacacagatggtgtcactccct
gtaggcgtcccagagatgcttggtgctggccctgggtgctgtggggtaag
ggggcgggtgtgtaagaatggaccccattcaccagggcttctttgcaaag
gttcagggctctttccctgctggccttgaaggcctcagaacaaacctgag
gatgtaatactggtggatagatgggactcccaagctgggcggtggtggcg
catgcctttaatcccagcacttgggaggcagaggcaggcagatttctgag
ttcgaggccagcctggtctacaaagtgagttccaggacagccagggctaa
acagagaaaccctgtcttgaaaaaaaaaaaaaaaaaaaaaaaaagaaggg
actcccagtctctgggccccacctgctctcctgtacggagctaaaggctt
ggggtgaacttgtgtaaaaccacactgtctggattcaaaccctagcccca
gtagttagagaggggtaggaggttgtcagccagctcactttttctgagcc
tcggttttcttcccctggggattactcaatatggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78637686_78638265
seq2: B6Ng01-201P13.b_44_624

seq1  GAATTCCAGAGAAAGGTCCTGGACCTGGATGGTCTGGCTGAGTCAGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAAAGGTCCTGGACCTGGATGGTCTGGCTGAGTCAGCTAG  50

seq1  AAAGGGAGGGGTGGAAGAAGGGATGTGGGGACCTGCCTGTGAGTCACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGGGGTGGAAGAAGGGATGTGGGGACCTGCCTGTGAGTCACTGC  100

seq1  CCCCAGGGGCTGGCAGGGTTCCTGGTGCTGCCTGCCCTACCTGGTATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGGCTGGCAGGGTTCCTGGTGCTGCCTGCCCTACCTGGTATCAC  150

seq1  GAAGGTCTGGATTTAAAGCCCAGCCCCCATCCCACCTCCTCTGTGACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGGATTTAAAGCCCAGCCCCCATCCCACCTCCTCTGTGACCTG  200

seq1  GGCTAAACAGTAGGCAACAATGGTGACTCTGAGGTAGTGCTTAGCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACAGTAGGCAACAATGGTGACTCTGAGGTAGTGCTTAGCACAAA  250

seq1  GTCCATGACCATTTATATACCAACGCATTATGTATGTGCACCGTGTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGACCATTTATATACCAACGCATTATGTATGTGCACCGTGTAGGA  300

seq1  TCAACCAGCTCAGAGCCTCAGATCAGTGACACAAACCACAGGTCGGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAGCTCAGAGCCTCAGATCAGTGACACAAACCACAGGTCGGGGAC  350

seq1  CTCCTGTCATTTGCTAAGAACTCACAGGTTTCCTGAGGTTGCATGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCATTTGCTAAGAACTCACAGGTTTCCTGAGGTTGCATGCACAG  400

seq1  GTGCTTGGGCTCAAGTGCATGTTTGTAGGTATGTGACTGTGACCTCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGGCTCAAGTGCATGTTTGTAGGTATGTGACTGTGACCTCCCGT  450

seq1  CCTGTCTCACCTCTCTGTACCCTGCCCCATCTGATGCCCTGAAGACCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCACCTCTCTGTACCCTGCCCCATCTGATGCCCTGAAGACCCTG  500

seq1  AGAGAAAAGCCCTCCTCCGCACCCACTTCTGAAGAAACCCTCACCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGCCCTCCTCCGCACCCACTTCTGAAGAAACCCTCACCTCTGC  550

seq1  CCAGGGGCATCAG-AAAGCCCAGCTGAGGAG  580
       |||||||||||| |||||||||||||||||
seq2  TCAGGGGCATCAGAAAAGCCCAGCTGAGGAG  581

seq1: chr15_78845543_78846277
seq2: B6Ng01-201P13.g_68_804 (reverse)

seq1  TATCCATAATGAGTAATCCCCAGGGGAAG-AAACCGAGGCTCAG-AAAAG  48
      |||||||| |||||||||||||||||||| |||||||||||||| |||||
seq2  TATCCATATTGAGTAATCCCCAGGGGAAGAAAACCGAGGCTCAGAAAAAG  50

seq1  TGAGCTGGCTGGCAGCCTCCTACCCCTCTCTAACTACTGGGGCTAGGGTT  98
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  TGAGCTGGCTGACAACCTCCTACCCCTCTCTAACTACTGGGGCTAGGGTT  100

seq1  TGAATCCAGACAGTGTGGTTTTACACAAGTTCACCCCAAGCCTTTAGCTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAGACAGTGTGGTTTTACACAAGTTCACCCCAAGCCTTTAGCTC  150

seq1  CGTACAGGAGAGCAGGTGGGGCCCAGAGACTGGGAGTCCCTTCTTTTTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAGGAGAGCAGGTGGGGCCCAGAGACTGGGAGTCCCTTCTTTTTTT  200

seq1  TTTTTTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTTTAGCCCTGGCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTCAAGACAGGGTTTCTCTGTTTAGCCCTGGCTG  250

seq1  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGC  300

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACCGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACCGCC  350

seq1  CAGCTTGGGAGTCCCATCTATCCACCAGTATTACATCCTCAGGTTTGTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGGAGTCCCATCTATCCACCAGTATTACATCCTCAGGTTTGTTC  400

seq1  TGAGGCCTTCAAGGCCAGCAGGGAAAGAGCCCTGAACCTTTGCAAAGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTTCAAGGCCAGCAGGGAAAGAGCCCTGAACCTTTGCAAAGAAG  450

seq1  CCCTGGTGAATGGGGTCCATTCTTACACACCCGCCCCCTTACCCCACAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTGAATGGGGTCCATTCTTACACACCCGCCCCCTTACCCCACAGC  500

seq1  ACCCAGGGCCAGCACCAAGCATCTCTGGGACGCCTACAGGGAGTGACACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCCAGCACCAAGCATCTCTGGGACGCCTACAGGGAGTGACACC  550

seq1  ATCTGTGTTTGGGGACCAAGTAGACCTGTCTCTTGACAGCAGCCAGGCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTTTGGGGACCAAGTAGACCTGTCTCTTGACAGCAGCCAGGCCC  600

seq1  AGTGTGTGGCCTAGAGCATCCCAGTCCTGCTGTGGATCGGGCTGCCTGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGGCCTAGAGCATCCCAGTCCTGCTGTGGATCGGGCTGCCTGCT  650

seq1  CCTGCAGGTGCTCACACTAGGAGAGGCCTTGCTCTACTTAACTGCTTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGTGCTCACACTAGGAGAGGCCTTGCTCTACTTAACTGCTTCTA  700

seq1  GCTGGAGGACAGTGGTAACAGTTGCGTTTCTGAATTC  735
      |||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGACAGTGGTAACAGTTGCGTTTCTGAATTC  737