BAC Information

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BAC

Clone NameB6Ng01-203B19
Chromosome15 (Build37)
Map Location 13,312,327 - 13,500,167
singlet/doubletdoublet
Overlap geneLOC666686, LOC239338
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
Downstream geneLOC666708, LOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203B19.bB6Ng01-203B19.g
ACCGA023417GA023418
length1,218142
definitionB6Ng01-203B19.b B6Ng01-203B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,498,962 - 13,500,167)(13,312,327 - 13,312,468)
sequence
gaattctccatgtgacaggaaatattcagaaaagctgtcacatcagttaa
cacaatatgtagagcattagaggagttcgatttaaatttatctcctgatt
cgagaagctcatatttaattagtttactctttcattacataaatatttat
taaacatctattaaaatcagtcattgaagagctaaaagacagtgtcatgt
ctgtgaataaaaggtatcctaattggtcttgtggcttctccctcttgctg
tatttcagctcagagatgactgccagctagctaatctttacacacatcaa
tgtccaaagttttcagccattcctctgcctagaaaccaattcaaatccct
ttcctggcattacaggcttgattttttcctggccgtaaacatacctccca
atgtgactcatctctgccctatgttacaaatctgtttatttctcaacagc
acacaggagagcatatgcttccatactttgtttgtataccttcttctgcc
ttatcttaccccaagccctctcagttgtacaaaaaactgcctcagtatgg
gagcatcattccttcctcttcctcgaactagacagagtcactctcttgca
ttatgtgaatgttggaaatgggctgggaagaaaattcctatgcaggttaa
ataagtacctaatccaggctcctgacttccttccttcctggcttcttttc
tgtgacaagcaagggacaagattctatctcaattgttttgtttgaattcc
actttctactaatagtagaggttttcactgagctctgaatttcttgactg
gtgctctgacccacgacatagcccttgttagcttctgcccaaggtgcact
gagctccggggccacaatatacttgccatagctgacaggtttgaactctt
tctaaggtagccccgtcaagtctatgtggtgggaacctataagcaagaac
acaagctgtgccagaaacgccactaagagaaagaagaaggggacatggat
actcagttcttaggttagtggttccgctgcatggctcatcggtaccagga
ggggtgtgaaacaaagaccagttcttcttccaaagttagactctcacact
ggaaggagatgcttgccgtcctgctcaggtgacgttctcgagcctcccta
taacagagaacagctgtgtttctgccgataggattctaccacaaggcttg
ggagctaggcgacaggtt

tccaggtccccatctccatttccccttcctgaatgccactgtcctctggg
tagacttaacctcttgttctcaagttaaaaaagaaagaaagaaagaaaga
gagagagagagagagagagagagagagagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13498962_13500167
seq2: B6Ng01-203B19.b_43_1260 (reverse)

seq1  AACCTGTC-CCTACTT--CAAGCTTTGTGGTAGAAT-CTAT-GGCAG--A  43
      |||||||| ||||  |  ||||| |||||||||||| |||| |||||  |
seq2  AACCTGTCGCCTAGCTCCCAAGCCTTGTGGTAGAATCCTATCGGCAGAAA  50

seq1  CACAGCTG-TCTCTG---TAGGGA-GCT-GAGACGTTCACTGGAGGCAGA  87
      |||||||| ||||||   |||||| ||| ||||   ||||  |||   ||
seq2  CACAGCTGTTCTCTGTTATAGGGAGGCTCGAGAACGTCACCTGAGCAGGA  100

seq1  CGGC-AGCATCT-CTTTCAGTGTGAGAAGTCT-ACTTTGGAAGAAG-ACT  133
      |||| ||||||| ||| ||||||||| ||||| ||||||||||||| |||
seq2  CGGCAAGCATCTCCTTCCAGTGTGAG-AGTCTAACTTTGGAAGAAGAACT  149

seq1  GGTCTTTGTTTCACACCCCTCCTGGTACCGATGAGCCATGCAGCCGGAAC  183
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GGTCTTTGTTTCACACCCCTCCTGGTACCGATGAGCCATGCAG-CGGAA-  197

seq1  CCACTAACCTAAGAACTGAGTATCCATGTCCCCTTTCTTCTTTTCTCTTA  233
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  CCACTAACCTAAGAACTGAGTATCCATGTCCCC-TTCTTC-TTTCTCTTA  245

seq1  GTGGCGTTTCTGGCACAGCTTGTGTTCTTGCTTATAGGTTCCCACCACAT  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGTTTCTGGCACAGCTTGTGTTCTTGCTTATAGGTTCCCACCACAT  295

seq1  AGACTTGACGGGGCTACCTTAGAAAGAGTTCAAACCTGTCAGCTATGGCA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGACGGGGCTACCTTAGAAAGAGTTCAAACCTGTCAGCTATGGCA  345

seq1  AGTATATTGTGGCCCCGGAGCTCAGTGCACCTTGGGCAGAAGCTAACAAG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTGTGGCCCCGGAGCTCAGTGCACCTTGGGCAGAAGCTAACAAG  395

seq1  GGCTATGTCGTGGGTCAGAGCACCAGTCAAGAAATTCAGAGCTCAGTGAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTCGTGGGTCAGAGCACCAGTCAAGAAATTCAGAGCTCAGTGAA  445

seq1  AACCTCTACTATTAGTAGAAAGTGGAATTCAAACAAAACAATTGAGATAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTACTATTAGTAGAAAGTGGAATTCAAACAAAACAATTGAGATAG  495

seq1  AATCTTGTCCCTTGCTTGTCACAGAAAAGAAGCCAGGAAGGAAGGAAGTC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTCCCTTGCTTGTCACAGAAAAGAAGCCAGGAAGGAAGGAAGTC  545

seq1  AGGAGCCTGGATTAGGTACTTATTTAACCTGCATAGGAATTTTCTTCCCA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGGATTAGGTACTTATTTAACCTGCATAGGAATTTTCTTCCCA  595

seq1  GCCCATTTCCAACATTCACATAATGCAAGAGAGTGACTCTGTCTAGTTCG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTTCCAACATTCACATAATGCAAGAGAGTGACTCTGTCTAGTTCG  645

seq1  AGGAAGAGGAAGGAATGATGCTCCCATACTGAGGCAGTTTTTTGTACAAC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGAAGGAATGATGCTCCCATACTGAGGCAGTTTTTTGTACAAC  695

seq1  TGAGAGGGCTTGGGGTAAGATAAGGCAGAAGAAGGTATACAAACAAAGTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGCTTGGGGTAAGATAAGGCAGAAGAAGGTATACAAACAAAGTA  745

seq1  TGGAAGCATATGCTCTCCTGTGTGCTGTTGAGAAATAAACAGATTTGTAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCATATGCTCTCCTGTGTGCTGTTGAGAAATAAACAGATTTGTAA  795

seq1  CATAGGGCAGAGATGAGTCACATTGGGAGGTATGTTTACGGCCAGGAAAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGCAGAGATGAGTCACATTGGGAGGTATGTTTACGGCCAGGAAAA  845

seq1  AATCAAGCCTGTAATGCCAGGAAAGGGATTTGAATTGGTTTCTAGGCAGA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCCTGTAATGCCAGGAAAGGGATTTGAATTGGTTTCTAGGCAGA  895

seq1  GGAATGGCTGAAAACTTTGGACATTGATGTGTGTAAAGATTAGCTAGCTG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCTGAAAACTTTGGACATTGATGTGTGTAAAGATTAGCTAGCTG  945

seq1  GCAGTCATCTCTGAGCTGAAATACAGCAAGAGGGAGAAGCCACAAGACCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATCTCTGAGCTGAAATACAGCAAGAGGGAGAAGCCACAAGACCA  995

seq1  ATTAGGATACCTTTTATTCACAGACATGACACTGTCTTTTAGCTCTTCAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATACCTTTTATTCACAGACATGACACTGTCTTTTAGCTCTTCAA  1045

seq1  TGACTGATTTTAATAGATGTTTAATAAATATTTATGTAATGAAAGAGTAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATTTTAATAGATGTTTAATAAATATTTATGTAATGAAAGAGTAA  1095

seq1  ACTAATTAAATATGAGCTTCTCGAATCAGGAGATAAATTTAAATCGAACT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAAATATGAGCTTCTCGAATCAGGAGATAAATTTAAATCGAACT  1145

seq1  CCTCTAATGCTCTACATATTGTGTTAACTGATGTGACAGCTTTTCTGAAT  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATGCTCTACATATTGTGTTAACTGATGTGACAGCTTTTCTGAAT  1195

seq1  ATTTCCTGTCACATGGAGAATTC  1206
      |||||||||||||||||||||||
seq2  ATTTCCTGTCACATGGAGAATTC  1218


seq1: chr15_13312327_13312468
seq2: B6Ng01-203B19.g_70_211

seq1  TCCAGGTCCCCATCTCCATTTCCCCTTCCTGAATGCCACTGTCCTCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCCCCATCTCCATTTCCCCTTCCTGAATGCCACTGTCCTCTGGG  50

seq1  TAGACTTAACCTCTTGTTCTCAAGTTAAAAAAGAAAGAAAGAAAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTAACCTCTTGTTCTCAAGTTAAAAAAGAAAGAAAGAAAGAAAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGG  142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGG  142


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