BAC Information

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BAC

Clone NameB6Ng01-203C02
Chromosome15 (Build37)
Map Location 85,125,071 - 85,126,071
singlet/doubletsinglet
Overlap genenone
Upstream geneParvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1
Downstream geneAtxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C02.bB6Ng01-203C02.g
ACCGA023431GA023432
length1,2041,136
definitionB6Ng01-203C02.b B6Ng01-203C02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggaacaagtcctgctggttgttatatataaatcccttttaag
tgtacagttgaattcagtttgctagtattttcttgattatttctattcaa
tattcacaagaaataagagtttgtagtgttcttatagtgtctctctggac
tactttgtaaggcaatacttctctcatggaatgaaatagaaattctttgt
tactctttcttcaatattttgggaaagtttgagaatggccagtgttagct
ctgtgaatatggaactcaccagggaagtccatgggtttccaagtgcaggg
tttctaagctccttaccaggtgcgggtatactcagagtctctgtttctta
gcaacttagataatttccaatcactagaaatttattcactcagcttaacc
aaattgtcagtatacaacaccacagtacctttatgattcttatttctaaa
gagtcggtagtatgtagtattgtccctacttcatttctgattttagtaat
ttgagttttttctcctttttcatagttcatgtagatacagattggccaac
ttaaagaaccaactttggtttttgttacctgacttcatcctgtgtatgtt
aattatcctttaaaatctaccgagtgttagtttatgttgtggtattgggt
ctgccctggaaagtgctccaggaagcatctggggaagcagagtatgctct
gttacattctgcacatgctatagatggagctggtatagcgtgccatttaa
attctctgtgcttcctcactttccgacagcctggtttacatattactcag
agtcaggtactgaaatagacaaccattaagaaaaagtttcattttttttt
tcttgagaattatgtttttgattcacatactttaatgtgcttttgggtat
ataagtagttatattcatttgtgattatttttaaaattccattttattta
tataagtacactgtagctgttttcagacacgtcagagagggcgtcagatc
ccattatagatgggttgtgagcacattgcttgcttgggaattgactcaga
cttctgggaaaaaacagtttagtgcttcttaaaccgctggagcaatctct
tcaggtccattctggaattttagttacaaaaccttttggaatacttcgcc
atggtgtgggtgccatgcatgcacaagacaagtgtctatggtcgcgcagt
ctga
gaattcaatgtcaatctgataaagcaagttccaggccagccagtgttcta
tatcaaaacccctatcacaaaaatggaccgggtgggggctggtgagctgg
cttagcagttaagagcacttgctgggcagttgtaaacactaatgtttgga
tctcagcacctgtgtaagatgctgggcatgtggcacacacctgtaatccc
agctccaagggtgaacagagacagaaggatcccctgggatttgtcagctt
ccagcctagctacgcaaacatgagaccgtgccttgaaggaatactcagag
agtaatggagaaggacggccaactccctctgctggacatcttgggcacct
gcacacatgtggcatgcactcacagaaacacatatagaaaaataaatcct
ttttaaagagagagagagagagagagagagaggagaaaggctggagggat
ggatcagtggttaagagcacttgctgttcttgcagagaacatgggaatga
tcaaagtgagttttatgtcgtgtctattttatcagcttttaagcggttaa
taagaaataaattggaaaaaaaaagccaaggagatggcttagctggtaaa
ggtagctgccgtcacagctgatgccctgagttcaccccaggacccacatg
gtagaagagaacctactcccacaagttgtcctttgtctatgagaatgcta
tagcatgtgcacacacacatacatacatatacacacacaaatacatatac
acacacatacacacatatactcatatacacacatatacacacatacacat
atactcatatacacacatacacacacatatacacacacatacacacatat
acacacatacacatatactcatatacacatatacacacacatacatacat
acactcatatacacacatacacacacactaaaatacatgtaaaaatgtgt
cttaaggaaagtgggtaaaagctgagggccaccgtgaagtccctgtctgc
agaatgttgcccaggcccctcatttttaccacatttttcttagcagaagg
gacttcgctgcaagtctcccaacgttctgaatcatcttgtcctgcctgcc
attatccaatggtgctggatcctctgaagaacacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_85125071_85126071
seq2: B6Ng01-203C02.g_190_1197

seq1  GTTGTAAACACTAATGTTTGGATCTCAGCACCTGTGTAAGATGCTGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAACACTAATGTTTGGATCTCAGCACCTGTGTAAGATGCTGGGCA  50

seq1  TGTGGCACACACCTGTAATCCCAGCTCCAAGGGTGAACAGAGACAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACACACCTGTAATCCCAGCTCCAAGGGTGAACAGAGACAGAAGG  100

seq1  ATCCCCTGGGATTTGTCAGCTTCCAGCCTAGCTACGCAAACATGAGACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGGGATTTGTCAGCTTCCAGCCTAGCTACGCAAACATGAGACCG  150

seq1  TGCCTTGAAGGAATACTCAGAGAGTAATGGAGAAGGACGGCCAACTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAAGGAATACTCAGAGAGTAATGGAGAAGGACGGCCAACTCCCT  200

seq1  CTGCTGGACATCTTGGGCACCTGCACACATGTGGCATGCACTCACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACATCTTGGGCACCTGCACACATGTGGCATGCACTCACAGAAA  250

seq1  CACATATAGAAAAATAAATCCTTTTTAAAGAGAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAGAAAAATAAATCCTTTTTAAAGAGAGAGAGAGAGAGAGAGAG  300

seq1  AGAGGAGAAAGGCTGGAGGGATGGATCAGTGGTTAAGAGCACTTGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAAGGCTGGAGGGATGGATCAGTGGTTAAGAGCACTTGCTGTT  350

seq1  CTTGCAGAGAACATGGGAATGATCAAAGTGAGTTTTATGTCGTGTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGAACATGGGAATGATCAAAGTGAGTTTTATGTCGTGTCTATT  400

seq1  TTATCAGCTTTTAAGCGGTTAATAAGAAATAAATTGGAAAAAAAAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGCTTTTAAGCGGTTAATAAGAAATAAATTGGAAAAAAAAAGCCA  450

seq1  AGGAGATGGCTTAGCTGGTAAAGGTAGCTGCCGTCACAGCTGATGCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGCTTAGCTGGTAAAGGTAGCTGCCGTCACAGCTGATGCCCTG  500

seq1  AGTTCACCCCAGGACCCACATGGTAGAAGAGAACCTACTCCCACAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACCCCAGGACCCACATGGTAGAAGAGAACCTACTCCCACAAGTTG  550

seq1  TCCTTTGTCTATGAGAATGCTATAGCATGTGCACACACACATACATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTCTATGAGAATGCTATAGCATGTGCACACACACATACATACAT  600

seq1  ATACACACACAAATACATATACACACACATACACACATATACTCATATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACAAATACATATACACACACATACACACATATACTCATATAC  650

seq1  ACACATATACACACATACACATATACTCATATACACACATACACACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATACACACATACACATATACTCATATACACACATACACACACAT  700

seq1  ATACACACACATACACACATATACACACATACACATATACTCATATACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACATACACACATATACACACATACACATATACTCATATACAC  750

seq1  ATATACACACACATACATACATACACTCATATACACACATACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACACATACATACATACACTCATATACACACATACACACACAC  800

seq1  T-AAATACATGTAAAAATGTGTCTTAAGGAAAGTGGGTAAAAGCTGAGGG  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACATGTAAAAATGTGTCTTAAGGAAAGTGGGTAAAAGCTGAGGG  850

seq1  CCACCGTGAAGTCCCTGTCTTGCAGAATGTTGCCCAGGCCCCTCATTTTT  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCACCGTGAAGTCCCTGTC-TGCAGAATGTTGCCCAGGCCCCTCATTTTT  899

seq1  ACCACATTTTTCTTAGCAG-AGGGACTTCGCTGC-AGTCTCC--ACGTTC  945
      ||||||||||||||||||| |||||||||||||| |||||||  ||||||
seq2  ACCACATTTTTCTTAGCAGAAGGGACTTCGCTGCAAGTCTCCCAACGTTC  949

seq1  TGAATCATC-TGTCCTG-CTGCCATTATCC-ATTGTTCTGGATCTCTCTG  992
      ||||||||| ||||||| |||||||||||| || || ||||||| |||||
seq2  TGAATCATCTTGTCCTGCCTGCCATTATCCAATGGTGCTGGATC-CTCTG  998

seq1  -AGGACACAT  1001
       || ||||||
seq2  AAGAACACAT  1008