BAC Information

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BAC

Clone NameB6Ng01-203D21
Chromosome15 (Build37)
Map Location 50,784,389 - 50,895,395
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203D21.bB6Ng01-203D21.g
ACCGA023511GA023512
length1,1701,188
definitionB6Ng01-203D21.b B6Ng01-203D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,894,221 - 50,895,395)(50,784,389 - 50,785,579)
sequence
gaattcccaatggaattcccactgctctgcacacagcatgtatatctccc
aatttcatctttataaagtcttcagtaaattcacatgactcccaagttca
tcatggacttaagtgaatacattgaatatgtgaacaaagtttcagaagaa
tccttgactacgacatgttatgcacatttttacactgctgtgttcctgtt
actatggacgtgcggtagtgcacttcatttcaaagaatagaaaaattgtg
aagtatattaacaagtttaattataagaagtgtaacattttacagcatgg
aaaatcataagctaaaaatactaagagaaaatatttctaggacagggtta
attaaagtgtaaatgcttataaaaattcataagaaaacatccagacacta
atatgctttttaaaaaaaaagatgaacagacagttgataattagtaaaca
aacatatggggaaatgctcaaactcactggttattagaattataaattga
aaaatgttgtcctgttattattaaattagtaaaactttaaactagtgttg
taactctacatagatgtgtttacaaagcactgtgaattaattctttgctt
ttagaactttaaattgaactaatcttttagtttaaaaaggagttttcttt
gtttcaaaagccacaaataagcacatacatttaactcagtactcctggaa
ttcattctaaataatacaaagggaagaaaatgtcaaatagttcaacttca
tcttcaatgaaacaaagaaaattgctctattttttttgaagcaatggact
ttcaaaaattttaaatattttccttaacttatcctactgttagtttgaca
ttacaactcctctcaatgaagcttaggtacttctatactttaataatatt
gttggttttgtttcactgaaaacaactaagacatcatttcattttctggt
gcataattttgtttgaacaaagcagagattgacacacagcttccaacagt
gctgtagattcagaaccatcatgatgttaagaaacacattaattgtggat
tcttgagctaattaacaccttagacttgttctactttaaatcaaacaagt
tggcttttcagatcaagtaggactaaaacatacccagtaaccaagactgg
aaaatgattattttttaaca
gaattctgcaggtagaacaagcttcatgaggaaagccactgaggtgcagt
gatgctaactggacacatcctttccactgactgttgagttactatattgt
ctcagcttgccctcagccctgttcacacttacaacgtggctactcaagct
tgtcctatccagacaaaactgttgagagaaacgaatgaggaccacttcac
ttgttcttttttttttttcttcactttttgtgaatgtgtaaccattgata
taatggaggggcttcatttttacattatttcttagctatttctttatttt
tgagattatatttacatcatttctgcaattcccttacctccctccaaatc
ttctcatatatacacttaagaattcatggcctcttttttcattagttgtt
cttacatgcatctatgtatatacatatgtaccttgaaggaaaacctatag
ctaacattgtattaaaccatcataattcctaacaacattctaaatattta
ttcctatacccacagataaacgtagccctcactctcatcaacggaacttt
gcttgcaaatgatgatgagcattatagaaaaccacagccaatcaaactgt
agaattgtggagtagatacacctacaaagcaactctctgtataaactctc
aagaaacatatggaagagacatagaatgatttaaacagccagaggaccag
ggagtttgctgagagcccctgtctcccagaaatgttacaatctacaccta
caaagtctcaccaatatgactgcataaacatgagctcaaaaaggagaaaa
aaatagacattccagtgtgaaagaggaaaagagtccatggcttcaacact
acacaaagaactaaatgtaactaaagaaatggtcattcccagagaaagca
catcaaatggatacccaatacaaaccatcatgcaggtaatatgtactgaa
ggagaaatttatatttcatcttctttgaggcagatatttgctgtgtttat
gtaatagtgctgggtttttctcagtcttctttgtgacactatatcaggat
acccatctgagtgattaccaggtggaaagccacactcatgtattcacatc
tggaagttccaaaatcaggtggctagaatggtgataaaatatacaatgtt
gatgatcctatagcctgaagggaacagcctgcctttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50894221_50895395
seq2: B6Ng01-203D21.b_46_1215 (reverse)

seq1  TGTT-AAAAATAATCATTTTCCAGTCTTTGTATACTTGGTTATGTTTTAG  49
      |||| ||||||||||||||||||||||| || ||| ||| ||||||||||
seq2  TGTTAAAAAATAATCATTTTCCAGTCTTGGT-TAC-TGGGTATGTTTTAG  48

seq1  TTCTTACCTTGATCTGAAAAGCCAAACTTGTTTTGATTTAAAAGTAGAAC  99
      | ||   |||||||||||||||| |||||| |||||||| ||||||||||
seq2  TCCT--ACTTGATCTGAAAAGCC-AACTTG-TTTGATTT-AAAGTAGAAC  93

seq1  AAGTCTAA-GTGTAAATTAAGCTCAAGAATCCACAATTAATGTGTTTCTT  148
      |||||||| |||| |||| |||||||||||||||||||||||||||||||
seq2  AAGTCTAAGGTGTTAATT-AGCTCAAGAATCCACAATTAATGTGTTTCTT  142

seq1  AACATCATGATGGTTCTGAATCTACAGCACTGTTGGAAGCTGTGTGTCAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATGATGGTTCTGAATCTACAGCACTGTTGGAAGCTGTGTGTCAA  192

seq1  TCTCTGCTTTGTTCAAACAAAATTATGCACCAGAAAATGAAATGATGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTTGTTCAAACAAAATTATGCACCAGAAAATGAAATGATGTCT  242

seq1  TAGTTGTTTTCAGTGAAACAAAACCAACAATATTATTAAAGTATAGAAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTTTTCAGTGAAACAAAACCAACAATATTATTAAAGTATAGAAGT  292

seq1  ACCTAAGCTTCATTGAGAGGAGTTGTAATGTCAAACTAACAGTAGGATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGCTTCATTGAGAGGAGTTGTAATGTCAAACTAACAGTAGGATAA  342

seq1  GTTAAGGAAAATATTTAAAATTTTTGAAAGTCCATTGCTTC-AAAAAAAT  397
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTAAGGAAAATATTTAAAATTTTTGAAAGTCCATTGCTTCAAAAAAAAT  392

seq1  AGAGCAATTTTCTTTGTTTCATTGAAGATGAAGTTGAACTATTTGACATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATTTTCTTTGTTTCATTGAAGATGAAGTTGAACTATTTGACATT  442

seq1  TTCTTCCCTTTGTATTATTTAGAATGAATTCCAGGAGTACTGAGTTAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTTTGTATTATTTAGAATGAATTCCAGGAGTACTGAGTTAAAT  492

seq1  GTATGTGCTTATTTGTGGCTTTTGAAACAAAGAAAACTCCTTTTTAAACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCTTATTTGTGGCTTTTGAAACAAAGAAAACTCCTTTTTAAACT  542

seq1  AAAAGATTAGTTCAATTTAAAGTTCTAAAAGCAAAGAATTAATTCACAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTAGTTCAATTTAAAGTTCTAAAAGCAAAGAATTAATTCACAGT  592

seq1  GCTTTGTAAACACATCTATGTAGAGTTACAACACTAGTTTAAAGTTTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAAACACATCTATGTAGAGTTACAACACTAGTTTAAAGTTTTAC  642

seq1  TAATTTAATAATAACAGGACAACATTTTTCAATTTATAATTCTAATAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATAATAACAGGACAACATTTTTCAATTTATAATTCTAATAACC  692

seq1  AGTGAGTTTGAGCATTTCCCCATATGTTTGTTTACTAATTATCAACTGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTTGAGCATTTCCCCATATGTTTGTTTACTAATTATCAACTGTC  742

seq1  TGTTCATCTTTTTTTTTAAAAAGCATATTAGTGTCTGGATGTTTTCTTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCTTTTTTTTTAAAAAGCATATTAGTGTCTGGATGTTTTCTTAT  792

seq1  GAATTTTTATAAGCATTTACACTTTAATTAACCCTGTCCTAGAAATATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTATAAGCATTTACACTTTAATTAACCCTGTCCTAGAAATATTT  842

seq1  TCTCTTAGTATTTTTAGCTTATGATTTTCCATGCTGTAAAATGTTACACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGTATTTTTAGCTTATGATTTTCCATGCTGTAAAATGTTACACT  892

seq1  TCTTATAATTAAACTTGTTAATATACTTCACAATTTTTCTATTCTTTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAATTAAACTTGTTAATATACTTCACAATTTTTCTATTCTTTGAA  942

seq1  ATGAAGTGCACTACCGCACGTCCATAGTAACAGGAACACAGCAGTGTAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGCACTACCGCACGTCCATAGTAACAGGAACACAGCAGTGTAAA  992

seq1  AATGTGCATAACATGTCGTAGTCAAGGATTCTTCTGAAACTTTGTTCACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATAACATGTCGTAGTCAAGGATTCTTCTGAAACTTTGTTCACA  1042

seq1  TATTCAATGTATTCACTTAAGTCCATGATGAACTTGGGAGTCATGTGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATGTATTCACTTAAGTCCATGATGAACTTGGGAGTCATGTGAAT  1092

seq1  TTACTGAAGACTTTATAAAGATGAAATTGGGAGATATACATGCTGTGTGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAGACTTTATAAAGATGAAATTGGGAGATATACATGCTGTGTGC  1142

seq1  AGAGCAGTGGGAATTCCATTGGGAATTC  1175
      ||||||||||||||||||||||||||||
seq2  AGAGCAGTGGGAATTCCATTGGGAATTC  1170

seq1: chr15_50784389_50785579
seq2: B6Ng01-203D21.g_64_1251

seq1  GAATTCTGCAGGTAGAACAAGCTTCATGAGGAAAGCCACTGAGGTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGTAGAACAAGCTTCATGAGGAAAGCCACTGAGGTGCAGT  50

seq1  GATGCTAACTGGACACATCCTTTCCACTGACTGTTGAGTTACTATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAACTGGACACATCCTTTCCACTGACTGTTGAGTTACTATATTGT  100

seq1  CTCAGCTTGCCCTCAGCCCTGTTCACACTTACAACGTGGCTACTCAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTGCCCTCAGCCCTGTTCACACTTACAACGTGGCTACTCAAGCT  150

seq1  TGTCCTATCCAGACAAAACTGTTGAGAGAAACGAATGAGGACCACTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATCCAGACAAAACTGTTGAGAGAAACGAATGAGGACCACTTCAC  200

seq1  TTGTTCTTTTTTTTTTTTCTTCACTTTTTGTGAATGTGTAACCATTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTTTTTTTTTTCTTCACTTTTTGTGAATGTGTAACCATTGATA  250

seq1  TAATGGAGGGGCTTCATTTTTACATTATTTCTTAGCTATTTCTTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGGGGCTTCATTTTTACATTATTTCTTAGCTATTTCTTTATTTT  300

seq1  TGAGATTATATTTACATCATTTCTGCAATTCCCTTACCTCCCTCCAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATATTTACATCATTTCTGCAATTCCCTTACCTCCCTCCAAATC  350

seq1  TTCTCATATATACACTTAAGAATTCATGGCCTCTTTTTTCATTAGTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATATATACACTTAAGAATTCATGGCCTCTTTTTTCATTAGTTGTT  400

seq1  CTTACATGCATCTATGTATATACATATGTACCTTGAAGGAAAACCTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGCATCTATGTATATACATATGTACCTTGAAGGAAAACCTATAG  450

seq1  CTAACATTGTATTAAACCATCATAATTCCTAACAACATTCTAAATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTGTATTAAACCATCATAATTCCTAACAACATTCTAAATATTTA  500

seq1  TTCCTATACCCACAGATAAACGTAGCCCTCACTCTCATCAACGGAACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATACCCACAGATAAACGTAGCCCTCACTCTCATCAACGGAACTTT  550

seq1  GCTTGCAAATGATGATGAGCATTATAGAAAACCACAGCCAATCAAACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAAATGATGATGAGCATTATAGAAAACCACAGCCAATCAAACTGT  600

seq1  AGAATTGTGGAGTAGATACACCTACAAAGCAACTCTCTGTATAAACTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTGGAGTAGATACACCTACAAAGCAACTCTCTGTATAAACTCTC  650

seq1  AAGAAACATATGGAAGAGACATAGAATGATTTAAACAGCCAGAGGACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATATGGAAGAGACATAGAATGATTTAAACAGCCAGAGGACCAG  700

seq1  GGAGTTTGCTGAGAGCCCCTGTCTCCCAGAAATGTTACAATCTACACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGCTGAGAGCCCCTGTCTCCCAGAAATGTTACAATCTACACCTA  750

seq1  CAAAGTCTCACCAATATGACTGCATAAACATGAGCTCAAAAAGGAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTCACCAATATGACTGCATAAACATGAGCTCAAAAAGGAGAAAA  800

seq1  AAATAGACATTCCAGTGTGAAAGAGGAAAAGAGTCCATGGCTTCAACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACATTCCAGTGTGAAAGAGGAAAAGAGTCCATGGCTTCAACACT  850

seq1  ACACAAAGAACTAAATGTAACTAAAGAAATGGTCATTCCCAGAGAAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGAACTAAATGTAACTAAAGAAATGGTCATTCCCAGAGAAAGCA  900

seq1  CATCAAATGGATACCCAATACAAACCATCATGCAGGTAATAATGTACTGA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATCAAATGGATACCCAATACAAACCATCATGCAGGTAAT-ATGTACTGA  949

seq1  AGGAGAAATTTATATTTCATC-TCTTTGAGGCAGATATTTTGCTGTTGTT  999
      ||||||||||||||||||||| ||||||||||||||| ||||||||   |
seq2  AGGAGAAATTTATATTTCATCTTCTTTGAGGCAGATA-TTTGCTGT--GT  996

seq1  TTATGTAATAGTGCTGGGTTTTTCTCAGTCTTCTTTGTGACACTATATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAATAGTGCTGGGTTTTTCTCAGTCTTCTTTGTGACACTATATCA  1046

seq1  AGATACCCAATTCTGAGTGATTTACCAG--TGAAAG-CACACTCATGTAT  1096
       ||||||||  ||||||||| |||||||   ||||| |||||||||||||
seq2  GGATACCCA--TCTGAGTGA-TTACCAGGTGGAAAGCCACACTCATGTAT  1093

seq1  TCACATCTTGGAAG-TCCAAAATCAAGTTGCTAGAAT-GTGATAA---AT  1141
      ||||||| |||||| |||||||||| || |||||||| |||||||   ||
seq2  TCACATC-TGGAAGTTCCAAAATCAGGTGGCTAGAATGGTGATAAAATAT  1142

seq1  ACCATGTTGATGAATCATAGAGGCTGAAGAAGGAACAGCCTGCCCTTTAT  1191
      || ||||||||| ||| || || ||||||  ||||||||||| |||||||
seq2  ACAATGTTGATG-ATCCTATAGCCTGAAG--GGAACAGCCTG-CCTTTAT  1188