BAC Information

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BAC

Clone NameB6Ng01-206G22
Chromosome15 (Build37)10 (Build37)
Map Location 85,765,784 - 85,766,61196,494,684 - 96,495,040
singlet/doubletsingletsinglet
Overlap geneCelsr1
Upstream geneNup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu
Downstream geneBC021523, Cerk, LOC100042300, Tbc1d22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206G22.bB6Ng01-206G22.g
ACCGA025847GA025848
length818191
definitionB6Ng01-206G22.b B6Ng01-206G22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,765,784 - 85,766,611)(96,494,684 - 96,495,040)
sequence
gaattcccatggcccctgctgtccccatgtcctcataaagccatagcttg
tttcttctacttcctgggccctggattcttgttcttcatcccagtcaggc
agctggagtggagtcggagatagtcagaggagaggtggaccctaaggagt
gtctgtaccaagctcccatttcacgtgaggcaaattgaagctagaggctc
gtgtaacctaggccccatggatcctgagtcagccagagaacccctcagca
gagctcagagagtgggaggagtcagggatgcccagagccctcccttcttc
cagctcgctgccagaggtcacagggcccttggatagatttgtttgcattg
gctggagggtggggccatcagcccagacagaagccagcctctagcctgtg
cctgcccacttacctgaggtcacagccccagaggttgggggttgttggtg
tgcatggcaaattctttcctcattagctgtaatttcacaaggttcccggc
tggccagaagctcactttggcctgaacttggaagcaccgccctgcctggg
gatgctatttctctgtgggtgttgctctgtcggaacatattaaattggcc
gttttcattcagtgatgacgggcgcctacaagctgtcattagtgtacctg
gagggaaaaaggctctgttcagcaaggttagccctgactaactctggtag
ccacagaattaaagactggatacaccaagagggctttaggggtcctgtta
actcatgagcacccaagggccacttgtatggttcgcaaagctgctctaca
ggaattgggggtgggggt
cgagaatgaaatggctaacaaaagtagacatatcagtaaactctttgaga
gagcctacctggatcaataaggcaaaatggcaactaagtccttatgtcag
cctccagcctccatacacaccctcacacacatgcacctgtatacacacat
gtatatgtgtatgtattggtgtatatatgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_85765784_85766611
seq2: B6Ng01-206G22.b_47_864 (reverse)

seq1  ACCCCCACCCCCAATTCCTGTTAGAGCAGCCTCTGCGAACCATAACAAGG  50
      |||||||||||||||||||| |||||||| || |||||||||| |||| |
seq2  ACCCCCACCCCCAATTCCTG-TAGAGCAG-CTTTGCGAACCAT-ACAA-G  46

seq1  TGGCCCCTTGGGTTGCTCATGAGGTCTACAGGACCCCTTAAAGCCCTCCT  100
      ||| |||||||| ||||||||| ||  |||||||||| ||||||||| ||
seq2  TGG-CCCTTGGG-TGCTCATGA-GTTAACAGGACCCC-TAAAGCCCT-CT  91

seq1  TGGTGTATCCAGTCTTTAATTCTGTGGCTACCAGAGTTAGTCAGGGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATCCAGTCTTTAATTCTGTGGCTACCAGAGTTAGTCAGGGCTAA  141

seq1  CCTTGCTGAACAGAGCCTTTTTCCCTCCAGGTACACTAATGACAGCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGAACAGAGCCTTTTTCCCTCCAGGTACACTAATGACAGCTTGT  191

seq1  AGGCGCCCGTCATCACCTGAATGAAAACGGCCAATTTAATATGTTCCGAC  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGCGCCCGTCATCA-CTGAATGAAAACGGCCAATTTAATATGTTCCGAC  240

seq1  AGAGCAACACCCACAGAGAAATAGCATCCCCAGGCAGGGCGGTGCTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACACCCACAGAGAAATAGCATCCCCAGGCAGGGCGGTGCTTCCA  290

seq1  AGTTCAGGCCAAAGTGAGCTTCTGGCCAGCCGGGAACCTTGTGAAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGCCAAAGTGAGCTTCTGGCCAGCCGGGAACCTTGTGAAATTAC  340

seq1  AGCTAATGAGGAAAGAATTTGCCATGCACACCAACAACCCCCAACCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGAGGAAAGAATTTGCCATGCACACCAACAACCCCCAACCTCTG  390

seq1  GGGCTGTGACCTCAGGTAAGTGGGCAGGCACAGGCTAGAGGCTGGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGACCTCAGGTAAGTGGGCAGGCACAGGCTAGAGGCTGGCTTCT  440

seq1  GTCTGGGCTGATGGCCCCACCCTCCAGCCAATGCAAACAAATCTATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGCTGATGGCCCCACCCTCCAGCCAATGCAAACAAATCTATCCAA  490

seq1  GGGCCCTGTGACCTCTGGCAGCGAGCTGGAAGAAGGGAGGGCTCTGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGACCTCTGGCAGCGAGCTGGAAGAAGGGAGGGCTCTGGGCA  540

seq1  TCCCTGACTCCTCCCACTCTCTGAGCTCTGCTGAGGGGTTCTCTGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACTCCTCCCACTCTCTGAGCTCTGCTGAGGGGTTCTCTGGCTGA  590

seq1  CTCAGGATCCATGGGGCCTAGGTTACACGAGCCTCTAGCTTCAATTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATCCATGGGGCCTAGGTTACACGAGCCTCTAGCTTCAATTTGCC  640

seq1  TCACGTGAAATGGGAGCTTGGTACAGACACTCCTTAGGGTCCACCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGAAATGGGAGCTTGGTACAGACACTCCTTAGGGTCCACCTCTCC  690

seq1  TCTGACTATCTCCGACTCCACTCCAGCTGCCTGACTGGGATGAAGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTATCTCCGACTCCACTCCAGCTGCCTGACTGGGATGAAGAACAA  740

seq1  GAATCCAGGGCCCAGGAAGTAGAAGAAACAAGCTATGGCTTTATGAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGGGCCCAGGAAGTAGAAGAAACAAGCTATGGCTTTATGAGGAC  790

seq1  ATGGGGACAGCAGGGGCCATGGGAATTC  828
      ||||||||||||||||||||||||||||
seq2  ATGGGGACAGCAGGGGCCATGGGAATTC  818

seq1: chr10_96494684_96495040
seq2: B6Ng01-206G22.g_203_262 (reverse)

seq1  CACACACACACACATATATATATATATATATACACACATACATACATATC  50
      |||||||||||||            ||||||||||  ||||||||| || 
seq2  CACACACACACAC------------ATATATACACCAATACATACACATA  38

seq1  TATATGTATATGTACATATACATGTGTGTATATATATATATATATATATA  100
      || |||| | | ||||  | ||                            
seq2  TACATGTGTGTATACAGGTGCA----------------------------  60

seq1  TATATATATATATATATATACACACACACACATGTATATAACAGATATAC  150
                                                        
seq2  --------------------------------------------------  60

seq1  ACCTATCTATAGTAGTTAATTTCCTCATCTCTAGATTCAGATTTCAGACA  200
                                                        
seq2  --------------------------------------------------  60

seq1  AGAGTCAGCATGAAGAAGAAAGCTTTAATTCACAGTGGTAGGGTATCCTC  250
                                                        
seq2  --------------------------------------------------  60

seq1  CATAATGACAGGAAGAGAATGGTTGGTGTGATGGATGTGGTTGTCATGGC  300
                                                        
seq2  --------------------------------------------------  60

seq1  AGCTGGATAAAGCTGCAGGTCCATATCTGGTAGATAAGGATGCAGGAGAC  350
                                                        
seq2  --------------------------------------------------  60

seq1  AGGTGCA  357
             
seq2  -------  60