BAC Information

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BAC

Clone NameB6Ng01-207M04
Chromosome15 (Build37)
Map Location 32,424,651 - 32,586,352
singlet/doubletdoublet
Overlap geneSema5a
Upstream geneMarch6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp, 1700084J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207M04.bB6Ng01-207M04.g
ACCGA026823GA026824
length1,1901,149
definitionB6Ng01-207M04.b B6Ng01-207M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,424,651 - 32,425,832)(32,585,181 - 32,586,352)
sequence
gaattctcttagtctgggttgctataaacaactgtaagttagctaactac
ttgttgttaatgacactgcaatatggccttaaaaacaggatggctctcct
cattttgcagacctgagctggaaatatgagaccagctgtagacactttgc
agccttcctgtcaccgtgtggagtttgttcagcaatcagactcaacaagg
tcattgtttctaggaattggcagcctagactccttgtgggatacttggaa
ttctatgggtctgtctgagcttgaatcttgtttttgcaacttgtgctttt
cagttacacaatattaatttttttccctcatgctgtttttcatttgaagt
ttgaaacacctgccagaaagggaagcttaagggtttggataatatgtttt
ttcttctggaagacattcacattaaaccttcctaaggtggttttactggc
actgttcacataacttagaaacgtaagtttattccctgtaatttgtcaat
tctgaaatcagactcttgtctttagtgctgggtctaatctatgttccatg
tgtaaatttcttctgctggaattcatcattggttgagggagtcttttagc
tcataagcaacacactcagcttgtaaatatggcttatttggaagtcatat
tcaaaccagttttgatcttaagaaagaatgcaaagtagatctgaattcat
agttcattaggaaatactattttcctaaggttgccataacaaagtgtatc
acaaattctgggtctagcaactacacagacttgttcgtttacagttccag
acaccagaagtctgaaatcaggatggagacggttgaattgtttacctact
ccagctccagatattccttggcctgtgatttcatttattgtatcagctcc
cctattgtcttcataggaacttctccatgtcacagtatcgcaaaacttcc
tttacttttagtacacagttcactggaagtagattcaccagacccactca
tgatgatctaggtatgtcctgtatatgactaccatgaaacagaattctta
aaataagaaatagcttcaccatttgataggtttcaaaatgagtgtggttc
ttggttaggtttccacttggttctattacttggggagaatctcctcaggg
aagacacctcttggccatgtccttgatgtttgggcaagat
gaattctgactttggatcgcttttaaatttattcttttttctaggaaaat
actgtaaaagttaagcaactatgttcaatgtttttgtttcaatgctgttc
aataagacaaaatttccatggggtggtggtataaaaatatatgctcttcc
aaagtaggaacacagtgtctctaaattgcttcatattcttacaaatatcc
atatataaaaattaaaaataaaactttcttggtgagtgtgacaatctgtt
tttcattcctactgctgcttcgagaccattggaaagaatgcccacagagc
tgtctgcacaggcatctcttccatggattctgagattcagactgtgacaa
tctgtttttcatttctctgtttctagccaagcactgcatacttgctattt
atcagtacaaacttggcaagcactagtactcagagcccccccttccccag
tcaaacatgacactaatggcgtccagactccagaagacgagccagagttc
aatgggtgacttgtggtaacttcacaatggtatccaagagcttgggacgt
actaactcatcaaacagtcaaaggaaacaaagatgaagctactatgggcc
aaatgggaagagtcgagaagtccatctatttagaagccccctaccaacgg
tgaccaggtaaggctcagcatggtcctattcagcagggactgtagtctag
aagaatggcacgtgccatctaatgaacaaccgttacccagtaatctccag
cctttgaggcacaggcaagagagctagcagaatctcttggacaggtaatt
gtcaaccttcacaggcttactcctttgcccttgtcttgataaactgagtt
ttctgtggtctccggcattagcagtgaatactgccaatcctggcaggaac
atcatccctttctttgctttaacagaaagcttctattgctgcaacctgcc
ttagcatccttcatgacctagagagtggctcccattctttatgagctttt
tcttgttacctgtagtgcaaccaattagtatccccactagctacaaataa
aaatgagactcagctaatgtatttaatatgttgacataggtaacctctaa
ctattctctactgctgtctgactatgtgcctgtggggtgagccccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32424651_32425832
seq2: B6Ng01-207M04.b_40_1229

seq1  GAATTCTCTTAGTCTGGGTTGCTATAAACAACTGTAAGTTAGCTAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGTCTGGGTTGCTATAAACAACTGTAAGTTAGCTAACTAC  50

seq1  TTGTTGTTAATGACACTGCAATATGGCCTTAAAAACAGGATGGCTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTAATGACACTGCAATATGGCCTTAAAAACAGGATGGCTCTCCT  100

seq1  CATTTTGCAGACCTGAGCTGGAAATATGAGACCAGCTGTAGACACTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCAGACCTGAGCTGGAAATATGAGACCAGCTGTAGACACTTTGC  150

seq1  AGCCTTCCTGTCACCGTGTGGAGTTTGTTCAGCAATCAGACTCAACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCTGTCACCGTGTGGAGTTTGTTCAGCAATCAGACTCAACAAGG  200

seq1  TCATTGTTTCTAGGAATTGGCAGCCTAGACTCCTTGTGGGATACTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTCTAGGAATTGGCAGCCTAGACTCCTTGTGGGATACTTGGAA  250

seq1  TTCTATGGGTCTGTCTGAGCTTGAATCTTGTTTTTGCAACTTGTGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGGTCTGTCTGAGCTTGAATCTTGTTTTTGCAACTTGTGCTTTT  300

seq1  CAGTTACACAATATTAATTTTTTTCCCTCATGCTGTTTTTCATTTGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACACAATATTAATTTTTTTCCCTCATGCTGTTTTTCATTTGAAGT  350

seq1  TTGAAACACCTGCCAGAAAGGGAAGCTTAAGGGTTTGGATAATATGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACCTGCCAGAAAGGGAAGCTTAAGGGTTTGGATAATATGTTTT  400

seq1  TTCTTCTGGAAGACATTCACATTAAACCTTCCTAAGGTGGTTTTACTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGAAGACATTCACATTAAACCTTCCTAAGGTGGTTTTACTGGC  450

seq1  ACTGTTCACATAACTTAGAAACGTAAGTTTATTCCCTGTAATTTGTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCACATAACTTAGAAACGTAAGTTTATTCCCTGTAATTTGTCAAT  500

seq1  TCTGAAATCAGACTCTTGTCTTTAGTGCTGGGTCTAATCTATGTTCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATCAGACTCTTGTCTTTAGTGCTGGGTCTAATCTATGTTCCATG  550

seq1  TGTAAATTTCTTCTGCTGGAATTCATCATTGGTTGAGGGAGTCTTTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTCTTCTGCTGGAATTCATCATTGGTTGAGGGAGTCTTTTAGC  600

seq1  TCATAAGCAACACACTCAGCTTGTAAATATGGCTTATTTGGAAGTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGCAACACACTCAGCTTGTAAATATGGCTTATTTGGAAGTCATAT  650

seq1  TCAAACCAGTTTTGATCTTAAGAAAGAATGCAAAGTAGATCTGAATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCAGTTTTGATCTTAAGAAAGAATGCAAAGTAGATCTGAATTCAT  700

seq1  AGTTCATTAGGAAATACTATTTTCCTAAGGTTGCCATAACAAAGTGTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTAGGAAATACTATTTTCCTAAGGTTGCCATAACAAAGTGTATC  750

seq1  ACAAATTCTGGGTCTAGCAACTACACAGACTTGTTCGTTTACAGTTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTGGGTCTAGCAACTACACAGACTTGTTCGTTTACAGTTCCAG  800

seq1  ACACCAGAAGTCTGAAATCAGGATGGAGACGGTTGAATTGTTTACCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGTCTGAAATCAGGATGGAGACGGTTGAATTGTTTACCTACT  850

seq1  CCAGCTCCAGATATTCCTTGGCCTGTGATTTCATTTATTGTATCAGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCAGATATTCCTTGGCCTGTGATTTCATTTATTGTATCAGCTCC  900

seq1  CCTATTGTCTTCATAGGAACTTCTCCATGTCACAGTATCGCAAAACTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGTCTTCATAGGAACTTCTCCATGTCACAGTATCGCAAAACTTCC  950

seq1  TTTACTTTTAGTACACAGTTCACTGGAAGTAGATTCACCAGACCAACTCA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTACTTTTAGTACACAGTTCACTGGAAGTAGATTCACCAGACCCACTCA  1000

seq1  TGATGATCTTAAGGTTATGTCCTGTATATGACTACCATGAAACAGA--TC  1048
      |||||||||  ||| |||||||||||||||||||||||||||||||  ||
seq2  TGATGATCT--AGG-TATGTCCTGTATATGACTACCATGAAACAGAATTC  1047

seq1  TTACA--TAGAAATAGGCTCAC--ATTGATAGG-TTCAAAATGAGTGTG-  1092
      ||| |   ||||||||  ||||   |||||||| ||||||||||||||| 
seq2  TTAAAATAAGAAATAGCTTCACCATTTGATAGGTTTCAAAATGAGTGTGG  1097

seq1  -TCTTTGGTAGGTATTCCAACTGGTTCTAATAATTTGGGGAGAA--TCCT  1139
       |||| | ||||| |||||  ||||||| || | ||||||||||  ||||
seq2  TTCTTGGTTAGGT-TTCCACTTGGTTCT-ATTACTTGGGGAGAATCTCCT  1145

seq1  CA-GGAAGACA-CTCTTGCCCCATG-CTTGGTTGTTTGGGAAAGAT  1182
      || |||||||| ||||||  ||||| | | | |||||||| |||||
seq2  CAGGGAAGACACCTCTTG-GCCATGTCCTTGATGTTTGGGCAAGAT  1190

seq1: chr15_32585181_32586352
seq2: B6Ng01-207M04.g_61_1209 (reverse)

seq1  ATCT-GGGCT-ACACCACAGGGCACATAGTCAGACCAGCAGTTAGAAGAA  48
      |||| ||||| || ||||| |||||||||||||| |||||| ||| ||||
seq2  ATCTGGGGCTCACCCCACA-GGCACATAGTCAGA-CAGCAG-TAG-AGAA  46

seq1  TAGTTTAGAGGTTACCTATTGTCAACCCATATAAAATAACCATAGCCTGA  98
      ||| |||||||||||||| ||||||  ||||| |||||  |||   ||||
seq2  TAG-TTAGAGGTTACCTA-TGTCAA--CATATTAAATA--CATTAGCTGA  90

seq1  GTCTCATTTTTATTTGTAAGCTAGTTGGGGATAACCTTAAATTGGTTGCA  148
      ||||||||||||||||| |||||| ||||||||  ||  |||||||||||
seq2  GTCTCATTTTTATTTGT-AGCTAG-TGGGGATA--CT--AATTGGTTGCA  134

seq1  CTACAGGTAACCAAGAAAAAGCTCAATAAAGAATGGGAGCCACTTCTCCT  198
      |||||||||| ||||||||||||| |||||||||||||||||| ||| ||
seq2  CTACAGGTAA-CAAGAAAAAGCTC-ATAAAGAATGGGAGCCAC-TCT-CT  180

seq1  AGGTCATGAAGGATGCCTAAGGCAGGTTTGCAGCAATAGAAGCCTTTCTG  248
      ||||||||||||||| |||||||||| ||||||||||||||| |||||||
seq2  AGGTCATGAAGGATG-CTAAGGCAGG-TTGCAGCAATAGAAG-CTTTCTG  227

seq1  TTAAAGCAAAGAAAGGGATGATGTTCCCTGCCAGGATTGGCAGTATTCAC  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTAAAGCAAAGAAAGGGATGATGTT-CCTGCCAGGATTGGCAGTATTCAC  276

seq1  TGCTAATGCCGGAGACCACAGAAAACTCAGTTTATCAAGACAAGGGCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGCCGGAGACCACAGAAAACTCAGTTTATCAAGACAAGGGCAAA  326

seq1  GGAGTAAGCCTGTGAAGGTTGACAATTACCTGTCCAAGAGATTCCTGCTA  398
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAGTAAGCCTGTGAAGGTTGACAATTACCTGTCCAAGAGATT-CTGCTA  375

seq1  GCTCTCTTGCCTGTGCCTCAAAGGCTGGAGATTACTGGGTAACGGTTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGCCTGTGCCTCAAAGGCTGGAGATTACTGGGTAACGGTTGTT  425

seq1  CATTAGATGGCACGTGCCATTCTTCTAGACTACAGTCCCTGCTGAATAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATGGCACGTGCCATTCTTCTAGACTACAGTCCCTGCTGAATAGG  475

seq1  ACCATGCTGAGCCTTACCTGGTCACCGTTGGTAGGGGGCTTCTAAATAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTGAGCCTTACCTGGTCACCGTTGGTAGGGGGCTTCTAAATAGA  525

seq1  TGGACTTCTCGACTCTTCCCATTTGGCCCATAGTAGCTTCATCTTTGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCTCGACTCTTCCCATTTGGCCCATAGTAGCTTCATCTTTGTTT  575

seq1  CCTTTGACTGTTTGATGAGTTAGTACGTCCCAAGCTCTTGGATACCATTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACTGTTTGATGAGTTAGTACGTCCCAAGCTCTTGGATACCATTG  625

seq1  TGAAGTTACCACAAGTCACCCATTGAACTCTGGCTCGTCTTCTGGAGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTACCACAAGTCACCCATTGAACTCTGGCTCGTCTTCTGGAGTCT  675

seq1  GGACGCCATTAGTGTCATGTTTGACTGGGGAAGGGGGGGCTCTGAGTACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCCATTAGTGTCATGTTTGACTGGGGAAGGGGGGGCTCTGAGTACT  725

seq1  AGTGCTTGCCAAGTTTGTACTGATAAATAGCAAGTATGCAGTGCTTGGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCCAAGTTTGTACTGATAAATAGCAAGTATGCAGTGCTTGGCT  775

seq1  AGAAACAGAGAAATGAAAAACAGATTGTCACAGTCTGAATCTCAGAATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAGAAATGAAAAACAGATTGTCACAGTCTGAATCTCAGAATCC  825

seq1  ATGGAAGAGATGCCTGTGCAGACAGCTCTGTGGGCATTCTTTCCAATGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAGATGCCTGTGCAGACAGCTCTGTGGGCATTCTTTCCAATGGT  875

seq1  CTCGAAGCAGCAGTAGGAATGAAAAACAGATTGTCACACTCACCAAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGCAGCAGTAGGAATGAAAAACAGATTGTCACACTCACCAAGAAA  925

seq1  GTTTTATTTTTAATTTTTATATATGGATATTTGTAAGAATATGAAGCAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTTAATTTTTATATATGGATATTTGTAAGAATATGAAGCAAT  975

seq1  TTAGAGACACTGTGTTCCTACTTTGGAAGAGCATATATTTTTATACCACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACACTGTGTTCCTACTTTGGAAGAGCATATATTTTTATACCACC  1025

seq1  ACCCCATGGAAATTTTGTCTTATTGAACAGCATTGAAACAAAAACATTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGGAAATTTTGTCTTATTGAACAGCATTGAAACAAAAACATTGA  1075

seq1  ACATAGTTGCTTAACTTTTACAGTATTTTCCTAGAAAAAAGAATAAATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTGCTTAACTTTTACAGTATTTTCCTAGAAAAAAGAATAAATTT  1125

seq1  AAAAGCGATCCAAAGTCAGAATTC  1172
      ||||||||||||||||||||||||
seq2  AAAAGCGATCCAAAGTCAGAATTC  1149