BAC Information

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BAC

Clone NameB6Ng01-207P18
Chromosome15 (Build37)11 (Build37)
Map Location 19,273,888 - 19,274,16152,111,529 - 52,112,636
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneEG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207P18.bB6Ng01-207P18.g
ACCGA026985GA026986
length4601,109
definitionB6Ng01-207P18.b B6Ng01-207P18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,273,888 - 19,274,161)(52,111,529 - 52,112,636)
sequence
actaatatagaacaggttgtccttgaattcacagagacctacctgcttct
ccctcccaagtatactgggattaagggtatgccctaccatgcctagcctt
taatatatatatataaatttgtgggtgttctgtgagagttgcgtgtgcac
atataaccatgtaaccacaaccacaggttcccatggaaggtagaagaggg
tatcagaaccctcctggaactggtatataagcagttgtgagccacctgac
ttgagtgctaggaactgaactccagtcctctgaaagggcagcaagtgcta
ccgtgccttttccagcctctggctgatgtaataattagaatctgacttcc
ttgagatgagcctcaactcctgtgtattcatatagtcattcatattcctc
tctctctctctctctctctccacactctctctctctctctctctcatgtg
tgtgtgtgtc

gaattcactccaattgactgaacaccagtcctttgacacccagtgcagtc
cctccctcaggaagggactctgagtttggtgttttgagacaagctctcat
gtagctcaggctagcctcaaattcacagtgtaattaaggataattctgag
cttctggtcttccgacaggtgctaggattgcaggtgtgggccaggctggc
tgagaatgaccttgaacttctgatctcccaacctctacatagttccagag
tgctgagatcacagatagttgcctgatttaagaatatagctattttcagc
tggcagcggtgcctcatgtcttttatcgcagcactcgggaggcagagaaa
ggtgaatctctgtgagttcaaggtcagcctgatctacagagcaagttcta
ggacagctaacgctgttacacagaaaaaccctgtcttgaaaaaaagaaag
aaagaagaagaaagagagagagagagagaaagaaaagaatatagataatt
tctttgcccatcaagaggtctctgatgataaaggctcttagtaccaaaac
tgaagacctggatttgatccctgggagaagaagagaaccaactccaacaa
gttggcacacacataaacacacacatactaaattattttaattaaaattt
tttttcttgtatggccacaacgccatgatcacattcttcgaagtcaaaat
cccccatgcgtaaggcaggaggaactagtcactttcagatcaacagactt
gaaggacacagataattatgaccaaaggtcacacagcttctaaattctgg
ctgtgggatttgaacctagggagttggtttggaagcccatgtctgggcct
cagcttctcagtctgaagtgggtgtgatagtgattgtctgcctctcgggg
gcaacggatgcaatgctgttccacgcttccagtagccaggaaagaacaac
gcagggcaggattcacagaaatgagtatatttgagaaaaaaaacgacagc
ttagagaccaggtggtggctggggaccggcccccattcaagtagatctct
ccctaaactcattatgcttactcggacagctgaacctaattacagctcat
tttacaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19273888_19274161
seq2: B6Ng01-207P18.b_164_507 (reverse)

seq1  GACACACACACACACACACACACACACACACACACACACAGAGAGAGAGA  50
                                 |||||||||||||  ||||||||
seq2  --------------------------GACACACACACACA-TGAGAGAGA  23

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGA  100
      ||||||||||||| | | |||||||||||||||||||||||  | | | |
seq2  GAGAGAGAGAGAGTGTG-GAGAGAGAGAGAGAGAGAGAGAGGAATATGAA  72

seq1  GGGAGGGAGGGAGAGAGAGACTGAG-AGAGAGCACATC---ACGAATTAA  146
       |     | | | | | ||   |||  ||| || ||||   | ||| | |
seq2  TGACTATATGAATACACAG---GAGTTGAG-GCTCATCTCAAGGAAGTCA  118

seq1  CATAAAATAAATTATTAAGTAA------------TAAA------GTAG--  176
       ||      ||||||||  | |             |||      ||||  
seq2  GAT---TCTAATTATTACATCAGCCAGAGGCTGGAAAAGGCACGGTAGCA  165

seq1  ----------TCTCAG-----------TTAGTTACTGTTAC-CAAG----  200
                | ||||           | |||| ||   || ||||    
seq2  CTTGCTGCCCTTTCAGAGGACTGGAGTTCAGTTCCTAGCACTCAAGTCAG  215

seq1  --------GAACT--TTATAAAACA----CAGAA----------------  220
               ||||  ||||| | ||    ||| |                
seq2  GTGGCTCACAACTGCTTATATACCAGTTCCAGGAGGGTTCTGATACCCTC  265

seq1  -------TTGCCTGG--AC---------TGATAACTAAAGGGTAAATG--  250
             || | |||  ||         || | ||  | || || |||  
seq2  TTCTACCTTCCATGGGAACCTGTGGTTGTGGTTAC--ATGGTTATATGTG  313

seq1  -------AAATATCACAGAACACCCACAAAT  274
             || | |||||||||||||||||||
seq2  CACACGCAACTCTCACAGAACACCCACAAAT  344


seq1: chr11_52111529_52112636
seq2: B6Ng01-207P18.g_66_1174

seq1  GAATTCACTCCAATTGACTGAACACCAGTCCTTTGACACCCAGTGCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAATTGACTGAACACCAGTCCTTTGACACCCAGTGCAGTC  50

seq1  CCTCCCTCAGGAAGGGACTCTGAGTTTGGTGTTTTGAGACAAGCTCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCAGGAAGGGACTCTGAGTTTGGTGTTTTGAGACAAGCTCTCAT  100

seq1  GTAGCTCAGGCTAGCCTCAAATTCACAGTGTAATTAAGGATAATTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCAGGCTAGCCTCAAATTCACAGTGTAATTAAGGATAATTCTGAG  150

seq1  CTTCTGGTCTTCCGACAGGTGCTAGGATTGCAGGTGTGGGCCAGGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTCTTCCGACAGGTGCTAGGATTGCAGGTGTGGGCCAGGCTGGC  200

seq1  TGAGAATGACCTTGAACTTCTGATCTCCCAACCTCTACATAGTTCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGACCTTGAACTTCTGATCTCCCAACCTCTACATAGTTCCAGAG  250

seq1  TGCTGAGATCACAGATAGTTGCCTGATTTAAGAATATAGCTATTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGATCACAGATAGTTGCCTGATTTAAGAATATAGCTATTTTCAGC  300

seq1  TGGCAGCGGTGCCTCATGTCTTTTATCGCAGCACTCGGGAGGCAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGGTGCCTCATGTCTTTTATCGCAGCACTCGGGAGGCAGAGAAA  350

seq1  GGTGAATCTCTGTGAGTTCAAGGTCAGCCTGATCTACAGAGCAAGTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCTCTGTGAGTTCAAGGTCAGCCTGATCTACAGAGCAAGTTCTA  400

seq1  GGACAGCTAACGCTGTTACACAGAAAAACCCTGTCTTGAAAAAAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTAACGCTGTTACACAGAAAAACCCTGTCTTGAAAAAAAGAAAG  450

seq1  AAAGAAGAAGAAAGAGAGAGAGAGAGAGAAAGAAAAGAATATAGATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGAAAGAGAGAGAGAGAGAGAAAGAAAAGAATATAGATAATT  500

seq1  TCTTTGCCCATCAAGAGGTCTCTGATGATAAAGGCTCTTAGTACCAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCCATCAAGAGGTCTCTGATGATAAAGGCTCTTAGTACCAAAAC  550

seq1  TGAAGACCTGGATTTGATCCCTGGGAGAAGAAGAGAACCAACTCCAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCTGGATTTGATCCCTGGGAGAAGAAGAGAACCAACTCCAACAA  600

seq1  GTTGGCACACACATAAACACACACATACTAAATTATTTTAATTAAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCACACACATAAACACACACATACTAAATTATTTTAATTAAAATTT  650

seq1  TTTTTCTTGTATGGCCACAACGCCATGATCACATTCTTCGAAGTCAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTATGGCCACAACGCCATGATCACATTCTTCGAAGTCAAAAT  700

seq1  CCCCCATGCGTAAGGCAGGAGGAACTAGTCACTTTCAGATCAACAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGCGTAAGGCAGGAGGAACTAGTCACTTTCAGATCAACAGACTT  750

seq1  GAAGGACACAGATAATTATGACC-AAGGTCACACAGCTTCTAAATTCTGG  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAGGACACAGATAATTATGACCAAAGGTCACACAGCTTCTAAATTCTGG  800

seq1  CTGTGGGATTTGAACCTAGGGAGTTGGTTTGGAAGCCCATGTCTGGGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGATTTGAACCTAGGGAGTTGGTTTGGAAGCCCATGTCTGGGCCT  850

seq1  CAGCTTCTCAGTCTGAAGTGGGTGTGATAGTGATTGTCTGCCTCTC-GGG  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCTTCTCAGTCTGAAGTGGGTGTGATAGTGATTGTCTGCCTCTCGGGG  900

seq1  GCAACGGATGCAATGCTGTTCCACGCTTCCAGTAGCCAGGAAAGAACAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGGATGCAATGCTGTTCCACGCTTCCAGTAGCCAGGAAAGAACAAC  950

seq1  GCAGGGCAGGATTCACAGAAATGAGTATAATTGAGAAAAAATACGACAGC  998
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GCAGGGCAGGATTCACAGAAATGAGTATATTTGAGAAAAAAAACGACAGC  1000

seq1  TAAGAGAACCCAGGTG--TGCTGGG--CCCGCCCCCATTC-AGTAGATCT  1043
      | |||||  |||||||   ||||||  || |||||||||| |||||||||
seq2  TTAGAGA--CCAGGTGGTGGCTGGGGACCGGCCCCCATTCAAGTAGATCT  1048

seq1  CT-CCTTATCTCATTTATGCTTTACCTCGACAGGCTGAGCATAATTAACA  1092
      || ||| | |||| |||||| ||||   |||| ||||| | ||||| |||
seq2  CTCCCTAAACTCA-TTATGC-TTACTCGGACA-GCTGAACCTAATT-ACA  1094

seq1  GCTTCATTTTACAGGT  1108
      || |||||||||||||
seq2  GC-TCATTTTACAGGT  1109


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