BAC Information

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BAC

Clone NameB6Ng01-208C24
Chromosome15 (Build37)
Map Location 32,955,310 - 32,956,399
singlet/doubletsinglet
Overlap geneSdc2
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962
Downstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208C24.bB6Ng01-208C24.g
ACCGA027132GA027133
length1,1811,073
definitionB6Ng01-208C24.b B6Ng01-208C24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctctctatcctcagttgtgaagagcatctgcagcagctgctga
caatcatcccaaataggctgatgagtccatcaggaatctgctctgcggct
ccatgtaacctcagcggtctgcctcccgctgaccggacaggttcgtggtt
ctccccccggaggctggggttgaggctgtggataagggggaggtagtgaa
ctaggcttcattgattttggaggagaccatggatttatctggtggctccg
attcaggagaaaccttcaatttctcttgtaacacgagagtacaaccacaa
tttaggaaagcaaaatccaattttaacagtgcaagtaatccattctcttt
aaaaatcaacaccaaaacattactggctacaaagtttggctgcctgttac
gagagtacaaccacaattttgggaagcaaaacccaattttaacagtgcaa
acaatccattctctttaaaaatcaacaccaaaaacattactggctacaaa
gtttggctgcctgtttctgcacagaaatgcaagaaggtgaagtccccaat
acttcaaagagacattgccctaaattctatcttttataagtctggtttct
aggataagaattacatagaatattacccaattcaggcgtatctttagaga
cctttctccttgggttgtcttaatgccgcatgttgtatttttaaattact
ccaacccagagttacaagttttaagccaactttctgttaccaatggtaca
aatttttaatcataaccaataacttatgagccaataatatataaccaaga
catataaaacatatttatacctttaaaaccattcagaaatgaaatggctg
catacatttgcttatttaaaccaaacaaaattcttaattttttctgctat
agtttcaccttgttacctgatgaatttaataatcaaaagcacagagattt
tttttgtaggaaaaaacagccatcagttccttaccatagaactttgagaa
gctgctggttcatttaagagcagtgtttacaatcagctctagcagctttc
tcagccacactaaactcctaagtacaggtgcagtttcaaaggtcaagtgg
tatggtctatttaattttactttccgttagattatctcagaataggtcgg
gaagaatcctgacttttctctcaaccctcgt

gaattcatccattcatgggagttctattcagtgtgcatcaaacattgttc
taggtgtccatgatgaagatattgataatgaataacactagcagcaatgt
aattttctgttttatacttatgtggtacggctagattaaaccttgccatt
agagaaaattttgtgttttaataggtcccagagtggcattactgtcatgg
gtatagatagtctatccactgtgttgtacagctatgtgactgaagaatag
aaagagacctttcttcattttgtgaagcctagtttttttcacagcctcta
gaatccagtcatggattcaataaactttcaattggcttcattcaattatg
tgtgctcccttttcataattacacaaagcaccttgaggcttatgtactga
ctgaacactcttctaagtgccatttctgtggagagccttctagatcatca
cttgaattaattcttttgtgtccttattcagaagttgagtcgaagggaac
tgagcaagtcaactcttaaatgactttagggacttaaaatattaacaagt
aaaaccttgtagcttatcttaataataaagataataagcattacataaac
ttggggtcaaagcttcagtatctttctcacttgctagttttcactcacat
ctttccctggatgcaaatgggtatcattccattccttgatttttttcctc
ttccctttgctaatttctaaaagcatagcaaccaaagcaatgctaatgag
caagaaagcatgtgcttccttgatgaggactcaataagccattctgctgc
cctttctgccagataaccagttactgatggcaatcctataagaagaaaat
ggaaagaacctacaaaatactgccaacaggcttctctcatctgcattact
tgggcacagcaagacttaaaggaccaaccatgttttctatactcagacag
aaaacagtgaaacttgatttatatttatacagttataaaattatattatt
tatagaaatatgcagctagattatgagtatagggttctgtatctgggaaa
actctatcaatgtatactgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32955310_32956399
seq2: B6Ng01-208C24.g_63_1135

seq1  GAATTCATCCATTCATGGGAGTTCTATTCAGTGTGCATCAAACATTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCATTCATGGGAGTTCTATTCAGTGTGCATCAAACATTGTTC  50

seq1  TAGGTGTCCATGATGAAGATATTGATAATGAATAACACTAGCAGCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTCCATGATGAAGATATTGATAATGAATAACACTAGCAGCAATGT  100

seq1  AATTTTCTGTTTTATACTTATGTGGTACGGCTAGATTAAACCTTGCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGTTTTATACTTATGTGGTACGGCTAGATTAAACCTTGCCATT  150

seq1  AGAGAAAATTTTGTGTTTTAATAGGTCCCAGAGTGGCATTACTGTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATTTTGTGTTTTAATAGGTCCCAGAGTGGCATTACTGTCATGG  200

seq1  GTATAGATAGTCTATCCACTGTGTTGTACAGCTATGTGACTGAAGAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATAGTCTATCCACTGTGTTGTACAGCTATGTGACTGAAGAATAG  250

seq1  AAAGAGACCTTTCTTCATTTTGTGAAGCCTAGTTTTTTTCACAGCCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCTTTCTTCATTTTGTGAAGCCTAGTTTTTTTCACAGCCTCTA  300

seq1  GAATCCAGTCATGGATTCAATAAACTTTCAATTGGCTTCATTCAATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGTCATGGATTCAATAAACTTTCAATTGGCTTCATTCAATTATG  350

seq1  TGTGCTCCCTTTTCATAATTACACAAAGCACCTTGAGGCTTATGTACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCTTTTCATAATTACACAAAGCACCTTGAGGCTTATGTACTGA  400

seq1  CTGAACACTCTTCTAAGTGCCATTTCTGTGGAGAGCCTTCTAGATCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTCTTCTAAGTGCCATTTCTGTGGAGAGCCTTCTAGATCATCA  450

seq1  CTTGAATTAATTCTTTTGTGTCCTTATTCAGAAGTTGAGTCGAAGGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTAATTCTTTTGTGTCCTTATTCAGAAGTTGAGTCGAAGGGAAC  500

seq1  TGAGCAAGTCAACTCTTAAATGACTTTAGGGACTTAAAATATTAACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGTCAACTCTTAAATGACTTTAGGGACTTAAAATATTAACAAGT  550

seq1  AAAACCTTGTAGCTTATCTTAATAATAAAGATAATAAGCATTACATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTGTAGCTTATCTTAATAATAAAGATAATAAGCATTACATAAAC  600

seq1  TTGGGGTCAAAGCTTCAGTATCTTTCTCACTTGCTAGTTTTCACTCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCAAAGCTTCAGTATCTTTCTCACTTGCTAGTTTTCACTCACAT  650

seq1  CTTTCCCTGGATGCAAATGGGTATCATTCCATTCCTTGATTTTTTTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGGATGCAAATGGGTATCATTCCATTCCTTGATTTTTTTCCTC  700

seq1  TTCCCTTTGCTAATTTCTAAAAGCATAGCAACCAAAGCAATGCTAATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTGCTAATTTCTAAAAGCATAGCAACCAAAGCAATGCTAATGAG  750

seq1  CAAGAAAGCATGTGCTTCCTTGATGAGGACTCAATAAGCCATTCTGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGCATGTGCTTCCTTGATGAGGACTCAATAAGCCATTCTGCTGC  800

seq1  CCTTTCTGCCAGATAACCAGTTACTGATGGCAATCCTATAAGAAGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGCCAGATAACCAGTTACTGATGGCAATCCTATAAGAAGAAAAT  850

seq1  GGAAAGAACCTACAAAATACTGCCAACAGGCTTCTCTCATCTGCATTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACCTACAAAATACTGCCAACAGGCTTCTCTCATCTGCATTACT  900

seq1  TGGGCACAGCAAGACTTAAAGGACCAACCATGTTTTCTATACTCAGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGCAAGACTTAAAGGACCAACCATGTTTTCTATACTCAGACAG  950

seq1  AAAACAGTGAAACTTGAATTTATATTTATACAGTTATAAAAATTATAATT  1000
      |||||||||||||||| |||||||||||||||||||| |||||||| |||
seq2  AAAACAGTGAAACTTG-ATTTATATTTATACAGTTAT-AAAATTAT-ATT  997

seq1  ATTTATAGAAAATATGGCAGCTTAAGATTTATGAAGTATAGGGTTTCTTG  1050
      |||||||| |||||| ||||||  ||| ||||| |||||||||||   ||
seq2  ATTTATAG-AAATAT-GCAGCT--AGA-TTATG-AGTATAGGGTT--CTG  1039

seq1  TATCTTGGGAAAAACCTCTATCACATGTTATTACTGTGTT  1090
      |||| ||||||||  |||||||| ||||   |||||||||
seq2  TATC-TGGGAAAA--CTCTATCA-ATGT--ATACTGTGTT  1073


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