BAC Information

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BAC

Clone NameB6Ng01-208P04
Chromosome15 (Build37)
Map Location 29,632,164 - 29,676,534
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208P04.bB6Ng01-208P04.g
ACCGA027692GA027693
length1,0721,102
definitionB6Ng01-208P04.b B6Ng01-208P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,675,457 - 29,676,534)(29,632,164 - 29,633,266)
sequence
gaattctgacctctaacttgtattattttgaaaagctataaaaactttaa
ggaggtagaacctacaagcagaaaataggtccttgagggtgaggatcaaa
ggttgtaactcaggactttttctctctccacgtttgtctttcttcttatc
tgcttgcctgggaaatgctctcctacactcagcccatcgtgaaccatgag
ccatgatatgtaactcttctgtttgatcagctctgtcatactttctttct
tttcataaccagaaaggtaactaatccaccgtcatgcagctgccctctta
ttcactgtactactcaagcaaagcaaaacagttattagcagtcagtacaa
ctgttatgtatgtctgtcatttgctgttttaaggagtaagaaactgactt
ctttttcacataggaaaacaccaagttggggaatctaagagaactaagag
tgatttaactgaccaaacaaggacttggatccttgtacacacacacacac
acatacacatacacacacacacacacacacacacacacacacacacacac
acacacacgagtaaattgtaatgcaaaggtagaagactgtgggctcagtt
caaatcacagatgtttgtgtgcacatacatgtgcatgcattgtgagagtg
tgcatgcatgcctgtgtgtgtgtgtgatttcttctaattcagctctttat
tcattcatttcctcagatgagtgatgccactcaaattagaggggccgatc
ttgcttaattgccctactgtttaaactattacattgtaagtatcctgaga
agtacattcagtgtttcggctgagcatccatagcaacctccatacaacaa
ggtaagaagtaagatcataactgcccttcttctgactgcctaagagctat
cagaacttttggggacccatttatcctaagttaaggtgtctgtcaaaata
gcctcaataaatctctgaaatagcaaccccaaactcacctttgatataaa
cacttataatgttgatgtaactgtgttggacttggttatttgtaatacca
atctgcacacactgggatataa

gaattctgtgttctttgggtatatttccaagagttgattttctcagtcac
tagagattcctttcttgataactgtttatttagatatgtacctcatttta
aattggattatatgggggttttgatacatgtggttttagtaaaaacaaaa
atttccattatgtagattgctacattggccaattgatggtgcttattacc
ttacaaaagattttcaacttcataaggtctcatttactaattgttgattt
tagtgactgcactatccgtgttctgttcagaatctcctgtgccaatgtgt
tcaaggctatcccacactttttcttctgtcatgttcagggaatctggttt
aggtcaaaatgtttttttctttcttgatttttatcacattttaagtatat
tttatgtcaagtatttggtggcggttttaaatttctcatatgtaacctac
atcttaaaattactggtatgttaagagatcatttagttttctataagaaa
ttgattgatatacaaggatagacgtgaagacaagaaaagtgatgaggagg
gaatgatgggaaagacagacagaaaggactcaatctttgcccttcaggat
tatagttgaatagtccagagatttgctagaaaaatagcatgaagaaacac
attatcatattgcatttacttctagcaaaaagaagaaaggacacgacagc
aattcagtgccatgcttctaagcaatttatttagtatgctgttttctgta
ctagtcattttgaggttatttttttttcaatataaatgtgaaattttcag
gacttgaatttattttcaaagctctactgttatcacttgttagaaaaggt
acacagagggtccattaaagctaatctgtattttaatgttttgccaaata
gtggcacaaatcagtttttttcagatggtgaaaagtgtttccaggacact
gaactgcctgtgcagcctactagatgcagtggcgtctgcctgtcacctgt
ctgccttttatttactttactttttcctttcctttattgttgaaatagat
tattctatccgtaattagcctgaattagatttctctccccgactcctccc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29675457_29676534
seq2: B6Ng01-208P04.b_49_1120 (reverse)

seq1  TTATATCCCAGTGTGTGCAGATGGGTATTTACCAAATAACCAAGTTCAAA  50
      |||||||||||||||||||||| ||||||   |||||||||||| || ||
seq2  TTATATCCCAGTGTGTGCAGATTGGTATT--ACAAATAACCAAG-TCCAA  47

seq1  CACAGTGTACATCAACATTATAAGTGTTTTATTATCAAAGGTGAGTTTTG  100
      |||||| ||||||||||||||||||||||   ||||||||||||||||  
seq2  CACAGT-TACATCAACATTATAAGTGTTT--ATATCAAAGGTGAGTTT--  92

seq1  GGGTTTGCTATTTCAGAGATTTATTGAGGCTATTTTGACAGACA-CTTAA  149
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGGTTGCTATTTCAGAGATTTATTGAGGCTATTTTGACAGACACCTTAA  142

seq1  CTTAGGATAAATGGGTCCCC-AAAGTTCTGATAGCTCTTAGGCAGTCAGA  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTAGGATAAATGGGTCCCCAAAAGTTCTGATAGCTCTTAGGCAGTCAGA  192

seq1  AGAAGGGCAGTTATGATCTTACTTCTTACCTTGTTGTATGGAGGTTGCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCAGTTATGATCTTACTTCTTACCTTGTTGTATGGAGGTTGCTA  242

seq1  TGGATGCTCAGCCGAAACACTGAATGTACTTCTCAGGATACTTACAATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCAGCCGAAACACTGAATGTACTTCTCAGGATACTTACAATGT  292

seq1  AATAGTTTAAACAGTAGGGCAATTAAGCAAGATCGGCCCCTCTAATTTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTAAACAGTAGGGCAATTAAGCAAGATCGGCCCCTCTAATTTGA  342

seq1  GTGGCATCACTCATCTGAGGAAATGAATGAATAAAGAGCTGAATTAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCACTCATCTGAGGAAATGAATGAATAAAGAGCTGAATTAGAAG  392

seq1  AAATCACACACACACACAGGCATGCATGCACACTCTCACAATGCATGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACACACACACACAGGCATGCATGCACACTCTCACAATGCATGCAC  442

seq1  ATGTATGTGCACACAAACATCTGTGATTTGAACTGAGCCCACAGTCTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGCACACAAACATCTGTGATTTGAACTGAGCCCACAGTCTTCT  492

seq1  ACCTTTGCATTACAATTTACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGCATTACAATTTACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGT  542

seq1  GTGTGTGTGTGTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTACAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTACAAGG  592

seq1  ATCCAAGTCCTTGTTTGGTCAGTTAAATCACTCTTAGTTCTCTTAGATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTCCTTGTTTGGTCAGTTAAATCACTCTTAGTTCTCTTAGATTC  642

seq1  CCCAACTTGGTGTTTTCCTATGTGAAAAAGAAGTCAGTTTCTTACTCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTGGTGTTTTCCTATGTGAAAAAGAAGTCAGTTTCTTACTCCTT  692

seq1  AAAACAGCAAATGACAGACATACATAACAGTTGTACTGACTGCTAATAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCAAATGACAGACATACATAACAGTTGTACTGACTGCTAATAAC  742

seq1  TGTTTTGCTTTGCTTGAGTAGTACAGTGAATAAGAGGGCAGCTGCATGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCTTTGCTTGAGTAGTACAGTGAATAAGAGGGCAGCTGCATGAC  792

seq1  GGTGGATTAGTTACCTTTCTGGTTATGAAAAGAAAGAAAGTATGACAGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTAGTTACCTTTCTGGTTATGAAAAGAAAGAAAGTATGACAGAG  842

seq1  CTGATCAAACAGAAGAGTTACATATCATGGCTCATGGTTCACGATGGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAAACAGAAGAGTTACATATCATGGCTCATGGTTCACGATGGGCT  892

seq1  GAGTGTAGGAGAGCATTTCCCAGGCAAGCAGATAAGAAGAAAGACAAACG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGGAGAGCATTTCCCAGGCAAGCAGATAAGAAGAAAGACAAACG  942

seq1  TGGAGAGAGAAAAAGTCCTGAGTTACAACCTTTGATCCTCACCCTCAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAGAAAAAGTCCTGAGTTACAACCTTTGATCCTCACCCTCAAGG  992

seq1  ACCTATTTTCTGCTTGTAGGTTCTACCTCCTTAAAGTTTTTATAGCTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTCTGCTTGTAGGTTCTACCTCCTTAAAGTTTTTATAGCTTTT  1042

seq1  CAAAATAATACAAGTTAGAGGTCAGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  CAAAATAATACAAGTTAGAGGTCAGAATTC  1072


seq1: chr15_29632164_29633266
seq2: B6Ng01-208P04.g_67_1168

seq1  GAATTCTGTGTTCTTTGGGTATATTTCCAAGAGTTGATTTTCTCAGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTCTTTGGGTATATTTCCAAGAGTTGATTTTCTCAGTCAC  50

seq1  TAGAGATTCCTTTCTTGATAACTGTTTATTTAGATATGTACCTCATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTCCTTTCTTGATAACTGTTTATTTAGATATGTACCTCATTTTA  100

seq1  AATTGGATTATATGGGGGTTTTGATACATGTGGTTTTAGTAAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTATATGGGGGTTTTGATACATGTGGTTTTAGTAAAAACAAAA  150

seq1  ATTTCCATTATGTAGATTGCTACATTGGCCAATTGATGGTGCTTATTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATTATGTAGATTGCTACATTGGCCAATTGATGGTGCTTATTACC  200

seq1  TTACAAAAGATTTTCAACTTCATAAGGTCTCATTTACTAATTGTTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAGATTTTCAACTTCATAAGGTCTCATTTACTAATTGTTGATTT  250

seq1  TAGTGACTGCACTATCCGTGTTCTGTTCAGAATCTCCTGTGCCAATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTGCACTATCCGTGTTCTGTTCAGAATCTCCTGTGCCAATGTGT  300

seq1  TCAAGGCTATCCCACACTTTTTCTTCTGTCATGTTCAGGGAATCTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTATCCCACACTTTTTCTTCTGTCATGTTCAGGGAATCTGGTTT  350

seq1  AGGTCAAAATGTTTTTTTCTTTCTTGATTTTTATCACATTTTAAGTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAAATGTTTTTTTCTTTCTTGATTTTTATCACATTTTAAGTATAT  400

seq1  TTTATGTCAAGTATTTGGTGGCGGTTTTAAATTTCTCATATGTAACCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCAAGTATTTGGTGGCGGTTTTAAATTTCTCATATGTAACCTAC  450

seq1  ATCTTAAAATTACTGGTATGTTAAGAGATCATTTAGTTTTCTATAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAATTACTGGTATGTTAAGAGATCATTTAGTTTTCTATAAGAAA  500

seq1  TTGATTGATATACAAGGATAGACGTGAAGACAAGAAAAGTGATGAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGATATACAAGGATAGACGTGAAGACAAGAAAAGTGATGAGGAGG  550

seq1  GAATGATGGGAAAGACAGACAGAAAGGACTCAATCTTTGCCCTTCAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGGGAAAGACAGACAGAAAGGACTCAATCTTTGCCCTTCAGGAT  600

seq1  TATAGTTGAATAGTCCAGAGATTTGCTAGAAAAATAGCATGAAGAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGAATAGTCCAGAGATTTGCTAGAAAAATAGCATGAAGAAACAC  650

seq1  ATTATCATATTGCATTTACTTCTAGCAAAAAGAAGAAAGGACACGACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATATTGCATTTACTTCTAGCAAAAAGAAGAAAGGACACGACAGC  700

seq1  AATTCAGTGCCATGCTTCTAAGCAATTTATTTAGTATGCTGTTTTCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTGCCATGCTTCTAAGCAATTTATTTAGTATGCTGTTTTCTGTA  750

seq1  CTAGTCATTTTGAAGGTTA-TTTTTTTTCAATATAAATGTGAAATTTTCA  799
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  CTAGTCATTTTG-AGGTTATTTTTTTTTCAATATAAATGTGAAATTTTCA  799

seq1  GGACTTGAATTTATTTTCAAAGCTCTACTGTTATCACTTGTTAGAAAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGACTTGAATTTATTTTCAAAGCTCTACTGTTATCACTTGTTAGAAAAGG  849

seq1  TACACAGAGGGTCCATT-AAGCTAATCTGTATTTTAATG-TTTGCCAAAT  897
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  TACACAGAGGGTCCATTAAAGCTAATCTGTATTTTAATGTTTTGCCAAAT  899

seq1  AGTGGCACAAATCAGTTTTTTTCAGATGGTGAAAAGTG-TTCCAGGACAC  946
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGGCACAAATCAGTTTTTTTCAGATGGTGAAAAGTGTTTCCAGGACAC  949

seq1  TGAACTGCCTGTGCAGCTACCAAGAATGCAGTGGCGTCTGCTTGTCAACT  996
      |||||||||||||||||   | || |||||||||||||||| ||||| ||
seq2  TGAACTGCCTGTGCAGCCTACTAG-ATGCAGTGGCGTCTGCCTGTCACCT  998

seq1  GTCTGCCTTTTATTTACTTTTACTTTTTCTTTTCTTTTATTGTTGAAAAT  1046
      ||||||||||||||||| ||||||||||| |||| |||||||||| ||||
seq2  GTCTGCCTTTTATTTAC-TTTACTTTTTCCTTTCCTTTATTGTTG-AAAT  1046

seq1  AGATTATTTTCATACCGT-ATTA-CCTG-ATATGATTTCCTCTCCCCCAA  1093
      |||||||| | || |||| |||| |||| ||  ||||| |||| |||| |
seq2  AGATTATTCT-AT-CCGTAATTAGCCTGAATTAGATTT-CTCT-CCCCGA  1092

seq1  CTCCTCCCAT  1103
      ||||||||||
seq2  CTCCTCCCAT  1102


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