BAC Information

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BAC

Clone NameB6Ng01-209I06
Chromosome15 (Build37)
Map Location 78,146,461 - 78,288,658
singlet/doubletdoublet
Overlap geneCsf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6
Upstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2
Downstream geneIl2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209I06.bB6Ng01-209I06.g
ACCGA028112GA028113
length1,0491,193
definitionB6Ng01-209I06.b B6Ng01-209I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,287,612 - 78,288,658)(78,146,461 - 78,147,471)
sequence
gaattctctttgtagaccacatttggcttgaatttacagagatctgcctg
cctttacgagtgttgggattaaggcatgtgccataactgtccaaccttga
attttatttttcagaaaatgatttcccatgtagctcaggctgccccaaag
tcctcttgccctcatcttttgagtgctgggatttcagctgtgggccacca
cactggactctattcttagaataacaagtccattcatatgaataacacat
ttttataagaagtggcagcttttcctaaaaccaatctgccttgaagaaag
gtattgcgatgtctgtctgttggtgtcaggggtggccactttgtgggtgt
ctgtatttggtctgctgtgacatcacaggtcacagagccctgggacactc
tgctgtgttctccaggaggcaaaagaaacaagggtcttagagttaatatg
aagagtctggccttgacccccttaggacctggggcgccacactgagaact
ctgtgcgtggtcaggaaggctcttgctaccatcctctttgctttattccc
tctgtggtggtttcctgtttcatcgcagtgggtggctttcatagcatcac
acacctgagtgtgttggcacacatgttgaccccagaactcgggaggcaga
ggcagaaacctaagactttgacattagcctgagttgcatagtgagaccct
gtcagaaacgaaaataacaccccaaataagccaccacaccctcccatctg
ctttctcggctcctttgaaaggtcatggtcagcaaaatgtcactgtcagc
ttggtcaccctcagtgccgcagcatagacagcgctgggcctcagtggcta
gccatggccagcatccggttgttagttctgcaggagtcaacctgtgcagt
gtccagtgcagactgtggtctatgctatgtctgctctgacgaaaagccta
acgtttctggtggtggagctgcgctttcttgctgtgtgggtgcccacgga
gtcaaggcagaggagaaaggtcaaactcctcttcctttgcagtgctaag
gaattcctaatttgatttaaatcattttagaaagttagagtaattggtag
aaagtttaaagagaccatttgttataataatgttagaattaagagcaaaa
tgtgctccccacacccagaagtgagggctgcataagttagaacagaagca
cggtgagccttccacgcccatagttgtacttggaagagaaaacaggcttg
ggagatgttaatgatcaaagaaaacattcattctaggttgagactgattt
cctgaatcttgtgatctagggatgtgtctgcagggttcagtgtgcaccat
agaagggcaaggctatgaataaagagtatataattctattgtgagttatt
ataattatataccatttctatatagaatgtattaattctataattacagt
tctataattctgcaagaatagagaatagcagattagccagtttagctgaa
caaggcttcagacattagcagtaagatggatgacaacctggatctttgtg
aatacaaagtgtcaccagctaagcataggaaaaagtcgctactacagact
ggctcgcttgaatttgttgatcactgacaaaagaattatagtttgaggtt
acagtgaactcatggggagaaagactgatgagaaatgttcattcattcat
tcattcattcattcattcattcagtgcctctgtccaccaggatgcctgag
aacagggatttcccagcagagactgcaaggactccttgactctacactat
gaggactctgagcactttggagtgagtccaaggctggagtcagaaatcta
caagatgagatgaaggttcctcacagtacctgagaggatttcaaggatgt
gcagaaagagatgcagacagagctcactctgatcatgtgagatcatattg
gcccttgtattgatcaacctgagatgacataagcttctacattaaggaat
ttttgaaatctccctttagaaatcatcactacaatcatcatgtgcattct
tcatcacagtggttatcatcatcgattgcatccaccatgatcacacagtc
atcattctgcatcctcatcaccggccatatcatcgtccattgactcactg
tcatcagcatcattatcaccgaccatgcctcacatccacgtatacatccg
tcatcatcaccattccacctgttaaaagtgaaatacattatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78287612_78288658
seq2: B6Ng01-209I06.b_43_1091 (reverse)

seq1  CCTAGCACTGCAAAAGGAGA-GAGTTTGAC--TTCTCCTCTGCCCTTTGA  47
      | |||||||||||| | ||| |||||||||  ||||||||||||  ||||
seq2  CTTAGCACTGCAAAGGAAGAGGAGTTTGACCTTTCTCCTCTGCC--TTGA  48

seq1  CCTCCGTGGGCACCCACACAAGCAAG-AAGCGCAGCTCCACCACCAGAAA  96
       |||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  -CTCCGTGGGCACCCACAC-AGCAAGAAAGCGCAGCTCCACCACCAGAAA  96

seq1  CGTAAGGCTTTTCGTCAGAGCAGACATAGCATAGACCACAGTCTGCACTG  146
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGGCTTTTCGTCAGAGCAGACATAGCATAGACCACAGTCTGCACTG  146

seq1  GACACTGCACAGG-TGACTCCTGCAGAACTAAC-ACCGGATGCTGGCCAT  194
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  GACACTGCACAGGTTGACTCCTGCAGAACTAACAACCGGATGCTGGCCAT  196

seq1  GGCTAGCCACTGAGGCCCAGCGCTGTCTATGCTGCGGCACTGAGGGTGAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCACTGAGGCCCAGCGCTGTCTATGCTGCGGCACTGAGGGTGAC  246

seq1  CAAGCTGACAGTGACATTTTGCTGACCATGACCTTTCAAAGGAGCCGAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGACAGTGACATTTTGCTGACCATGACCTTTCAAAGGAGCCGAGA  296

seq1  AAGCAGATGGGAGGGTGTGGTGGCTTATTTGGGGTGTTATTTTCGTTTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATGGGAGGGTGTGGTGGCTTATTTGGGGTGTTATTTTCGTTTCT  346

seq1  GACAGGGTCTCACTATGCAACTCAGGCTAATGTCAAAGTCTTAGGTTTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTCTCACTATGCAACTCAGGCTAATGTCAAAGTCTTAGGTTTCT  396

seq1  GCCTCTGCCTCCCGAGTTCTGGGGTCAACATGTGTGCCAACACACTCAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCGAGTTCTGGGGTCAACATGTGTGCCAACACACTCAGG  446

seq1  TGTGTGATGCTATGAAAGCCACCCACTGCGATGAAACAGGAAACCACCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATGCTATGAAAGCCACCCACTGCGATGAAACAGGAAACCACCAC  496

seq1  AGAGGGAATAAAGCAAAGAGGATGGTAGCAAGAGCCTTCCTGACCACGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAATAAAGCAAAGAGGATGGTAGCAAGAGCCTTCCTGACCACGCA  546

seq1  CAGAGTTCTCAGTGTGGCGCCCCAGGTCCTAAGGGGGTCAAGGCCAGACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCTCAGTGTGGCGCCCCAGGTCCTAAGGGGGTCAAGGCCAGACT  596

seq1  CTTCATATTAACTCTAAGACCCTTGTTTCTTTTGCCTCCTGGAGAACACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATTAACTCTAAGACCCTTGTTTCTTTTGCCTCCTGGAGAACACA  646

seq1  GCAGAGTGTCCCAGGGCTCTGTGACCTGTGATGTCACAGCAGACCAAATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGTCCCAGGGCTCTGTGACCTGTGATGTCACAGCAGACCAAATA  696

seq1  CAGACACCCACAAAGTGGCCACCCCTGACACCAACAGACAGACATCGCAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCCACAAAGTGGCCACCCCTGACACCAACAGACAGACATCGCAA  746

seq1  TACCTTTCTTCAAGGCAGATTGGTTTTAGGAAAAGCTGCCACTTCTTATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCTTCAAGGCAGATTGGTTTTAGGAAAAGCTGCCACTTCTTATA  796

seq1  AAAATGTGTTATTCATATGAATGGACTTGTTATTCTAAGAATAGAGTCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTTATTCATATGAATGGACTTGTTATTCTAAGAATAGAGTCCA  846

seq1  GTGTGGTGGCCCACAGCTGAAATCCCAGCACTCAAAAGATGAGGGCAAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGGCCCACAGCTGAAATCCCAGCACTCAAAAGATGAGGGCAAGA  896

seq1  GGACTTTGGGGCAGCCTGAGCTACATGGGAAATCATTTTCTGAAAAATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGGGGCAGCCTGAGCTACATGGGAAATCATTTTCTGAAAAATAA  946

seq1  AATTCAAGGTTGGACAGTTATGGCACATGCCTTAATCCCAACACTCGTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGGTTGGACAGTTATGGCACATGCCTTAATCCCAACACTCGTAA  996

seq1  AGGCAGGCAGATCTCTGTAAATTCAAGCCAAATGTGGTCTACAAAGAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGATCTCTGTAAATTCAAGCCAAATGTGGTCTACAAAGAGAA  1046

seq1  TTC  1047
      |||
seq2  TTC  1049

seq1: chr15_78146461_78147471
seq2: B6Ng01-209I06.g_242_1260

seq1  TGTACTTGGAAGAGAAAACAGGCTTGGGAGATGTTAATGATCAAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGGAAGAGAAAACAGGCTTGGGAGATGTTAATGATCAAAGAAAA  50

seq1  CATTCATTCTAGGTTGAGACTGATTTCCTGAATCTTGTGATCTAGGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCTAGGTTGAGACTGATTTCCTGAATCTTGTGATCTAGGGATG  100

seq1  TGTCTGCAGGGTTCAGTGTGCACCATAGAAGGGCAAGGCTATGAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGGGTTCAGTGTGCACCATAGAAGGGCAAGGCTATGAATAAAG  150

seq1  AGTATATAATTCTATTGTGAGTTATTATAATTATATACCATTTCTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAATTCTATTGTGAGTTATTATAATTATATACCATTTCTATATA  200

seq1  GAATGTATTAATTCTATAATTACAGTTCTATAATTCTGCAAGAATAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTAATTCTATAATTACAGTTCTATAATTCTGCAAGAATAGAGA  250

seq1  ATAGCAGATTAGCCAGTTTAGCTGAACAAGGCTTCAGACATTAGCAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGATTAGCCAGTTTAGCTGAACAAGGCTTCAGACATTAGCAGTAA  300

seq1  GATGGATGACAACCTGGATCTTTGTGAATACAAAGTGTCACCAGCTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGACAACCTGGATCTTTGTGAATACAAAGTGTCACCAGCTAAGC  350

seq1  ATAGGAAAAAGTCGCTACTACAGACTGGCTCGCTTGAATTTGTTGATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAAAGTCGCTACTACAGACTGGCTCGCTTGAATTTGTTGATCAC  400

seq1  TGACAAAAGAATTATAGTTTGAGGTTACAGTGAACTCATGGGGAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAGAATTATAGTTTGAGGTTACAGTGAACTCATGGGGAGAAAGA  450

seq1  CTGATGAGAAATGTTCATTCATTCATTCATTCATTCATTCATTCATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGAAATGTTCATTCATTCATTCATTCATTCATTCATTCATTCAG  500

seq1  TGCCTCTGTCCACCAGGATGCCTGAGAACAGGGATTTCCCAGCAGAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTCCACCAGGATGCCTGAGAACAGGGATTTCCCAGCAGAGACT  550

seq1  GCAAGGACTCCTTGACTCTACACTATGAGGACTCTGAGCACTTTGGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACTCCTTGACTCTACACTATGAGGACTCTGAGCACTTTGGAGTG  600

seq1  AGTCCAAGGCTGGAGTCAGAAATCTACAAGATGAGATGAAGGTTCCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGGCTGGAGTCAGAAATCTACAAGATGAGATGAAGGTTCCTCAC  650

seq1  AGTACCTGAGAGGATTTCAAGGATGTGCAGAAAGAGATGCAGACAGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTGAGAGGATTTCAAGGATGTGCAGAAAGAGATGCAGACAGAGCT  700

seq1  CACTCTGATCATGTGAGATCATATTGG-CCTTGTATTGATCAAACCTGAG  749
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CACTCTGATCATGTGAGATCATATTGGCCCTTGTATTGATC-AACCTGAG  749

seq1  ATGACATAAGCTTCTACA-TAAGGAATTTTGAAAATCTCCCTTTAGAAAT  798
      |||||||||||||||||| |||||||||||  ||||||||||||||||||
seq2  ATGACATAAGCTTCTACATTAAGGAATTTTTGAAATCTCCCTTTAGAAAT  799

seq1  CATCACTACAATCATCATGTGCA-TCTTCATCACAAGTGTTATCATCATC  847
      ||||||||||||||||||||||| |||||||||||   ||||||||||||
seq2  CATCACTACAATCATCATGTGCATTCTTCATCACAGTGGTTATCATCATC  849

seq1  GA-TGCAATCACCATGATCACAACAGTCATCA-TCTGCATCCTCATCACC  895
      || ||||  |||||||||||| |||||||||| |||||||||||||||||
seq2  GATTGCATCCACCATGATCAC-ACAGTCATCATTCTGCATCCTCATCACC  898

seq1  GCCATTATCATCGT-CAATGACATCACTGTCATCAGCATCATTATCACC-  943
      | |  ||||||||| || |||| |||||||||||||||||||||||||| 
seq2  GGCCATATCATCGTCCATTGAC-TCACTGTCATCAGCATCATTATCACCG  947

seq1  ACCAT-CCTCATCACCA-TTATCACTATCGTCATCATCACCA-TCCACAC  990
      ||||| |||||   |||  ||| ||   |||||||||||||| ||||| |
seq2  ACCATGCCTCACATCCACGTAT-ACATCCGTCATCATCACCATTCCAC-C  995

seq1  TG-TATAAATG--ATACATTATAT  1011
      || || || ||  |||||||||||
seq2  TGTTAAAAGTGAAATACATTATAT  1019