BAC Information

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BAC

Clone NameB6Ng01-209I16
Chromosome15 (Build37)
Map Location 51,867,635 - 51,956,443
singlet/doubletdoublet
Overlap geneAard, LOC100039720
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21
Downstream geneLOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209I16.bB6Ng01-209I16.g
ACCGA028132GA028133
length1,165655
definitionB6Ng01-209I16.b B6Ng01-209I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,867,635 - 51,868,800)(51,955,789 - 51,956,443)
sequence
tcttggggtctataggtctttcagtgtttgtgaatacttgttgcctttgc
agaggcctggtgctcaattttcagcacctgcaatttgcctcataatcatc
caaaactccagttccaggggccgtgatggtctattctaatcagtgtgggt
accaggcacacatgtggtacatatgcatacatgcaggcaaaacagttata
tgcatgaataaatctttaaaaaatagaagtcttacatttgacaatggaga
aaagtaggtgtaataggctattgactcactgaacagctcagcatttgggc
ctctaggatgcctccatctgccgtttcgaatctggttatttaaatggtca
ctgtttgaactctcttgttttagtcattttgtttttttattcatctatct
atctatctatctatctatctatctatctatctatctatctatctattatt
tatttaagacagggtctcattatgtacctctgactatcctggaactcact
atatagacaagactggcccccgacttgcagagatccacctgtgtctaact
cccaagtgctggggttcattttagacactagacacaatgtatattatctc
tgtggtgggtgttgagttaccaaggttttgagaaggtatggaaacaaggt
atatatattcttacattaacatccactactgacttttgagtagtaggagt
tttgagtctgttaagagtctataatggcagcatcacggagacctagaaag
agaactcaagttttaggttaacctggattagagaataaagtcaagaccag
actagactacatagtgagactcttgtttttaaaaaccaacgacagagaat
acagatcagtggtagaatatttactagtatgtgcatgggccttgcactga
aataaatacataaaccatcaacaacataaaccaactgtaatggacagcta
caggattcccagagagagctttgtgagcctagtagagttctggtgtaggt
tttgtcattttttgatgacttaaagggccgaacaagttatgggttaaaga
aatggagatcccggacattcctgctctgtatgttggtgcgcattgcctca
tccttggggaatctcctgcttttctaatagccttttagcatgtaagtcag
aatcgtctggctctt
gaattctctcacgggttgtcttctgggggattctgacaagatcacattga
cagtaaagacgaaccaccacaggcatcattatgctacatatacaaaattc
taaagcacccatgaagtaactcataattcctgtgattgaaaaacttgatt
catttatttaaaaaaaataaatataaacaaaaagtttgctgggtgagaaa
gagggtagatcaaagagaaaaagaaagaaagggattgaatatgattaaaa
tacattgcagaaaatcaatctcaataaactaataagaaaggaaattatga
ctggttgtcttctatttagcatttcctacttaatgcaaagtgttctattt
gaggcattttaagtccttagaaacagtaatcctagatgagttacgatgca
aagaacaatgttctaggtaaaaaacaatgaactctgcacgctcttcttgt
ttcacacatgaatttaacaaagtacttacctagcgctcatttgttataac
gtccactaacatccccacagatctcagattaggaaatgtagctttaacga
tacaaaggtgaattaagtcaccctcccagaatatttattttagagatgag
cataaagaaagatgcacaaaagtaaacaaagtatgtgtgtgtgtgtgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51867635_51868800
seq2: B6Ng01-209I16.b_57_1221

seq1  TCTTGGGGTCTATAGGTCTTTCAGTGTTTGTGAATACTTGTTGCCTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGTCTATAGGTCTTTCAGTGTTTGTGAATACTTGTTGCCTTTGC  50

seq1  AGAGGCCTGGTGCTCAATTTTCAGCACCTGCAATTTGCCTCATAATCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTGGTGCTCAATTTTCAGCACCTGCAATTTGCCTCATAATCATC  100

seq1  CAAAACTCCAGTTCCAGGGGCCGTGATGGTCTATTCTAATCAGTGTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCCAGTTCCAGGGGCCGTGATGGTCTATTCTAATCAGTGTGGGT  150

seq1  ACCAGGCACACATGTGGTACATATGCATACATGCAGGCAAAACAGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCACACATGTGGTACATATGCATACATGCAGGCAAAACAGTTATA  200

seq1  TGCATGAATAAATCTTTAAAAAATAGAAGTCTTACATTTGACAATGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAATAAATCTTTAAAAAATAGAAGTCTTACATTTGACAATGGAGA  250

seq1  AAAGTAGGTGTAATAGGCTATTGACTCACTGAACAGCTCAGCATTTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGTGTAATAGGCTATTGACTCACTGAACAGCTCAGCATTTGGGC  300

seq1  CTCTAGGATGCCTCCATCTGCCGTTTCGAATCTGGTTATTTAAATGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGATGCCTCCATCTGCCGTTTCGAATCTGGTTATTTAAATGGTCA  350

seq1  CTGTTTGAACTCTCTTGTTTTAGTCATTTTGTTTTTTTATTC----ATCT  396
      ||||||||||||||||||||||||||||||||||||||||||    ||||
seq2  CTGTTTGAACTCTCTTGTTTTAGTCATTTTGTTTTTTTATTCATCTATCT  400

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTATT  450

seq1  TATTTAAGACAGGGTCTCATTATGTACCTCTGACTATCCTGGAACTCACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGACAGGGTCTCATTATGTACCTCTGACTATCCTGGAACTCACT  500

seq1  ATATAGACAAGACTGGCCCCCGACTTGCAGAGATCCACCTGTGTCTAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACAAGACTGGCCCCCGACTTGCAGAGATCCACCTGTGTCTAACT  550

seq1  CCCAAGTGCTGGGGTTCATTTTAGACACTAGACACAATGTATATTATCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGGTTCATTTTAGACACTAGACACAATGTATATTATCTC  600

seq1  TGTGGTGGGTGTTGAGTTACCAAGGTTTTGAGAAGGTATGGAAACAAGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGGTGTTGAGTTACCAAGGTTTTGAGAAGGTATGGAAACAAGGT  650

seq1  ATATATATTCTTACATTAACATCCACTACTGACTTTTGAGTAGTAGGAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTCTTACATTAACATCCACTACTGACTTTTGAGTAGTAGGAGT  700

seq1  TTTGAGTCTGTTAAGAGTCTATAATGGCAGCATCACGGAGACCTAGAAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTGTTAAGAGTCTATAATGGCAGCATCACGGAGACCTAGAAAG  750

seq1  AGAACTCAAGTTTTAGGTTAACCTGGATTAGAGAATAAAGTCAAGACCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGTTTTAGGTTAACCTGGATTAGAGAATAAAGTCAAGACCAG  800

seq1  ACTAGACTACATAGTGAGACTCTTGTTTTTAAAAACCAACGACAGAGAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTACATAGTGAGACTCTTGTTTTTAAAAACCAACGACAGAGAAT  850

seq1  ACAGATCAGTGGTAGAATATTTACTAGTATGTGCAT-GGCCTTGCACTGA  895
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAGATCAGTGGTAGAATATTTACTAGTATGTGCATGGGCCTTGCACTGA  900

seq1  AATAAATACATAAACCATCAACAAACATAAA-CAACTGTAATGGACAGCT  944
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AATAAATACATAAACCATCAAC-AACATAAACCAACTGTAATGGACAGCT  949

seq1  ACAAGGATTCCCAGAGAGAGCTTTGTGAGCCTAGTAGAGTTCTGGTGTAG  994
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-AGGATTCCCAGAGAGAGCTTTGTGAGCCTAGTAGAGTTCTGGTGTAG  998

seq1  GTTTTGTCATTTTTTGATGAACTTAAAGGG-CGAACAAGTTAT-GGTTAA  1042
      ||||||||||||||||||| |||||||||| |||||||||||| ||||||
seq2  GTTTTGTCATTTTTTGATG-ACTTAAAGGGCCGAACAAGTTATGGGTTAA  1047

seq1  AGAAATGGAAGAT-CCGGACATTCCTGCTCTGTATG-TGGTGCCGCCAGT  1090
      |||||||| |||| |||||||||||||||||||||| ||||| |||   |
seq2  AGAAATGG-AGATCCCGGACATTCCTGCTCTGTATGTTGGTG-CGC--AT  1093

seq1  TTGCTCTTCCTTGGGGAATCTTCTTTGTTTTTCTATAAGCCTTTTAGCAT  1140
      |  ||| |||||||||||||| |  || |||||||  |||||||||||||
seq2  TGCCTCATCCTTGGGGAATCTCC--TGCTTTTCTAATAGCCTTTTAGCAT  1141

seq1  GTAAATGTCAGATACCTCTGGCTCTT  1166
      ||||  ||||||  | ||||||||||
seq2  GTAA--GTCAGAATCGTCTGGCTCTT  1165

seq1: chr15_51955789_51956443
seq2: B6Ng01-209I16.g_65_719 (reverse)

seq1  CACACACACACACACACACACATACTTTGTTTACTTTTGTGCATCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACATACTTTGTTTACTTTTGTGCATCTTTCT  50

seq1  TTATGCTCATCTCTAAAATAAATATTCTGGGAGGGTGACTTAATTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTCATCTCTAAAATAAATATTCTGGGAGGGTGACTTAATTCACCT  100

seq1  TTGTATCGTTAAAGCTACATTTCCTAATCTGAGATCTGTGGGGATGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCGTTAAAGCTACATTTCCTAATCTGAGATCTGTGGGGATGTTAG  150

seq1  TGGACGTTATAACAAATGAGCGCTAGGTAAGTACTTTGTTAAATTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGTTATAACAAATGAGCGCTAGGTAAGTACTTTGTTAAATTCATGT  200

seq1  GTGAAACAAGAAGAGCGTGCAGAGTTCATTGTTTTTTACCTAGAACATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACAAGAAGAGCGTGCAGAGTTCATTGTTTTTTACCTAGAACATTG  250

seq1  TTCTTTGCATCGTAACTCATCTAGGATTACTGTTTCTAAGGACTTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCATCGTAACTCATCTAGGATTACTGTTTCTAAGGACTTAAAAT  300

seq1  GCCTCAAATAGAACACTTTGCATTAAGTAGGAAATGCTAAATAGAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAATAGAACACTTTGCATTAAGTAGGAAATGCTAAATAGAAGACA  350

seq1  ACCAGTCATAATTTCCTTTCTTATTAGTTTATTGAGATTGATTTTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCATAATTTCCTTTCTTATTAGTTTATTGAGATTGATTTTCTGCA  400

seq1  ATGTATTTTAATCATATTCAATCCCTTTCTTTCTTTTTCTCTTTGATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTAATCATATTCAATCCCTTTCTTTCTTTTTCTCTTTGATCTA  450

seq1  CCCTCTTTCTCACCCAGCAAACTTTTTGTTTATATTTATTTTTTTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTCACCCAGCAAACTTTTTGTTTATATTTATTTTTTTTAAAT  500

seq1  AAATGAATCAAGTTTTTCAATCACAGGAATTATGAGTTACTTCATGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATCAAGTTTTTCAATCACAGGAATTATGAGTTACTTCATGGGTG  550

seq1  CTTTAGAATTTTGTATATGTAGCATAATGATGCCTGTGGTGGTTCGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATTTTGTATATGTAGCATAATGATGCCTGTGGTGGTTCGTCTT  600

seq1  TACTGTCAATGTGATCTTGTCAGAATCCCCCAGAAGACAACCCGTGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCAATGTGATCTTGTCAGAATCCCCCAGAAGACAACCCGTGAGAG  650

seq1  AATTC  655
      |||||
seq2  AATTC  655