BAC Information

Click to search

BAC

Clone NameB6Ng01-209N11
Chromosome15 (Build37)
Map Location 13,613,498 - 13,744,411
singlet/doubletdoublet
Overlap geneLOC666708
Upstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC674819, LOC100040024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209N11.bB6Ng01-209N11.g
ACCGA028349GA028350
length833699
definitionB6Ng01-209N11.b B6Ng01-209N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,743,585 - 13,744,411)(13,613,498 - 13,614,195)
sequence
gaattcaccagaagaccaaaatgaacagtagaaaaaaataaagtcaaaag
tttaggtttagatagactacctttaagagaattactgtaataaacctaat
tgaactagatcctgtactccttttttaagtctataatcctgcctgcatta
tcagaggcctgcctgatccagggacactaaggtaggacttccccctaagc
tccccaaagccttgtctgttaggtctcctttgggcacccaaagctgtaaa
ctgttcctggtcctttgttctccatttgctgactcatagcactcactgcc
tatattccttgaatcctaccttctccaagaacaaccagataaaaacccaa
tcccccaatctcctgctttctaggttcccctgggacactctcagcagtga
agggaacatggtgcagttgaccactgctgagagtgtcccatgtcactcta
tttttcagcccacagaactttctgcattcctggaggctttccagcactaa
gaacaaccagatagctgaaagccagcacaagaacacaactaagagccatg
gcaacatggccctaccagaacccagctctcctaactcagaaagtcctgga
tgtcctaactaacctgaagcacaggaaaatgaccttaaaccaatgttatg
aagatagaggtatttaaacagggaatgaataactccccttaaagaagtac
aagaaaatcaatcaaatgagcaaaggaaatgaataatatttgttcaggac
ctgaaaatggaaattagaagcacacaaaaagcacaaatgttagggggatt
ccctggagatggaaaaatccctggcaaggaaat

gaattctgagtggttgtgagaaaccaagacttatgatctcagtttcttga
aaatcacagaatttttatttaattttattgacttatgcttttgtgccctt
tctaggcatagcagattggaatgagtttactttagttctttcattacagg
aggctgttgttatttgtttatatgcttctatgaaaaaacatggttctttt
gtttgtttggtgtgtgagtgtgagtgtgtgtgtagcttgtccttgtggct
ttatacatcttgaaatcatgagaactttatttaggtgacttttcttaata
ctcagagtataaattgtctgatggtatgaataacatcaggcattgcataa
gagtatagtgtgcttcatttttaggctgcattttcacagagtctgcaacc
tttagagtggtaaacactgcataatattatgcgttggtaattagtttgtg
taaacacagagaaaataagaaaaaataaagaaaaacatcaaagaatgttt
cccaaacataacaacacacaaagaatcagaaggctggatactgccaaaga
atcattgaatggtccagtagcaacttcccaagctgaaatataagatgaaa
agttaatgaaaaaaattaaaaccgtttacaatactgaataattgttactg
gaggtttaatttagatttgttcaaatatgcaccatatattttaaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13743585_13744411
seq2: B6Ng01-209N11.b_48_880 (reverse)

seq1  ATTTCCTTGCCAGG--ATTTTCCATCTCCA-GGATTCCCCCT-ACATTTG  46
      ||||||||||||||   ||||||||||||| ||| ||||||| |||||||
seq2  ATTTCCTTGCCAGGGATTTTTCCATCTCCAGGGAATCCCCCTAACATTTG  50

seq1  TGCTTTTTTGTGTGCTTCT-ATTTCCATTTTCAGGTCTTGAAC-AATATT  94
      ||| ||||||||||||||| ||||||||||||||||| ||||| ||||||
seq2  TGC-TTTTTGTGTGCTTCTAATTTCCATTTTCAGGTCCTGAACAAATATT  99

seq1  ATTCATTTCCTTTGCTCATTTGATTGATTTTCTTGTACTTCTTTAA-GGG  143
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTCATTTCCTTTGCTCATTTGATTGATTTTCTTGTACTTCTTTAAGGGG  149

seq1  AGTTATTCATTCCCTGTTTAAATACCTCTATCTTCATAACATTGGTTTAA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCATTCCCTGTTTAAATACCTCTATCTTCATAACATTGGTTTAA  199

seq1  GGTCATTTTCCTGTGCTTCAGGTTAGTTAGGACATCCAGGACTTTCTGAG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTTCCTGTGCTTCAGGTTAGTTAGGACATCCAGGACTTTCTGAG  249

seq1  TTAGGAGAGCTGGGTTCTGGTAGGGCCATGTTGCCATGGCTCTTAGTTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAGCTGGGTTCTGGTAGGGCCATGTTGCCATGGCTCTTAGTTGT  299

seq1  GTTCTTGTGCTGGCTTTCAGCTATCTGGTTGTTCTTAGTGCTGGAAAGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGCTGGCTTTCAGCTATCTGGTTGTTCTTAGTGCTGGAAAGCC  349

seq1  TCCAGGAATGCAGAAAGTTCTGTGGGCTGAAAAATAGAGTGACATGGGAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAATGCAGAAAGTTCTGTGGGCTGAAAAATAGAGTGACATGGGAC  399

seq1  ACTCTCAGCAGTGGTCAACTGCACCATGTTCCCTTCACTGCTGAGAGTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGCAGTGGTCAACTGCACCATGTTCCCTTCACTGCTGAGAGTGT  449

seq1  CCCAGGGGAACCTAGAAAGCAGGAGATTGGGGGATTGGGTTTTTATCTGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGAACCTAGAAAGCAGGAGATTGGGGGATTGGGTTTTTATCTGG  499

seq1  TTGTTCTTGGAGAAGGTAGGATTCAAGGAATATAGGCAGTGAGTGCTATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTGGAGAAGGTAGGATTCAAGGAATATAGGCAGTGAGTGCTATG  549

seq1  AGTCAGCAAATGGAGAACAAAGGACCAGGAACAGTTTACAGCTTTGGGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCAAATGGAGAACAAAGGACCAGGAACAGTTTACAGCTTTGGGTG  599

seq1  CCCAAAGGAGACCTAACAGACAAGGCTTTGGGGAGCTTAGGGGGAAGTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGAGACCTAACAGACAAGGCTTTGGGGAGCTTAGGGGGAAGTCC  649

seq1  TACCTTAGTGTCCCTGGATCAGGCAGGCCTCTGATAATGCAGGCAGGATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAGTGTCCCTGGATCAGGCAGGCCTCTGATAATGCAGGCAGGATT  699

seq1  ATAGACTTAAAAAAGGAGTACAGGATCTAGTTCAATTAGGTTTATTACAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTAAAAAAGGAGTACAGGATCTAGTTCAATTAGGTTTATTACAG  749

seq1  TAATTCTCTTAAAGGTAGTCTATCTAAACCTAAACTTTTGACTTTATTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTTAAAGGTAGTCTATCTAAACCTAAACTTTTGACTTTATTTT  799

seq1  TTTCTACTGTTCATTTTGGTCTTCTGGTGAATTC  827
      ||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGTTCATTTTGGTCTTCTGGTGAATTC  833


seq1: chr15_13613498_13614195
seq2: B6Ng01-209N11.g_67_765

seq1  GAATTCTGAGTGGTTGTGAGAAACCAAGACTTATGATCTCAGTTTCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGGTTGTGAGAAACCAAGACTTATGATCTCAGTTTCTTGA  50

seq1  AAATCACAGAATTTTTATTTAATTTTATTGACTTATGCTTTTGTGCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGAATTTTTATTTAATTTTATTGACTTATGCTTTTGTGCCCTT  100

seq1  TCTAGGCATAGCAGATTGGAATGAGTTTACTTTAGTTCTTTCATTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCATAGCAGATTGGAATGAGTTTACTTTAGTTCTTTCATTACAGG  150

seq1  AGGCTGTTGTTATTTGTTTATATGCTTCTATGAAAAAACATGGTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTGTTATTTGTTTATATGCTTCTATGAAAAAACATGGTTCTTTT  200

seq1  GTTTGTTTGGTGTGTGAGTGTGAGTGTGTGTGTAGCTTGTCCTTGTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGGTGTGTGAGTGTGAGTGTGTGTGTAGCTTGTCCTTGTGGCT  250

seq1  TTATACATCTTGAAATCATGAGAACTTTATTTAGGTGACTTTTCTTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATCTTGAAATCATGAGAACTTTATTTAGGTGACTTTTCTTAATA  300

seq1  CTCAGAGTATAAATTGTCTGATGGTATGAATAACATCAGGCATTGCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTATAAATTGTCTGATGGTATGAATAACATCAGGCATTGCATAA  350

seq1  GAGTATAGTGTGCTTCATTTTTAGGCTGCATTTTCACAGAGTCTGCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGTGTGCTTCATTTTTAGGCTGCATTTTCACAGAGTCTGCAACC  400

seq1  TTTAGAGTGGTAAACACTGCATAATATTATGCGTTGGTAATTAGTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTGGTAAACACTGCATAATATTATGCGTTGGTAATTAGTTTGTG  450

seq1  TAAACACAGAGAAAATAAGAAAAAATAAAGAAAAACATCAAAGAATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGAGAAAATAAGAAAAAATAAAGAAAAACATCAAAGAATGTTT  500

seq1  CCCAAACATAACAACACACAAAGAATCAGAAGGCTGGATACTGCCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACATAACAACACACAAAGAATCAGAAGGCTGGATACTGCCAAAGA  550

seq1  ATCATTGAATGGTCCAGTAGCAACTTCCCAAGCTGAAATATAAGATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAATGGTCCAGTAGCAACTTCCCAAGCTGAAATATAAGATGAAA  600

seq1  AGTTAATGAAAAAAATTAAAACCGTTTACAATACTGAATAATTGTTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGAAAAAAATTAAAACCGTTTACAATACTGAATAATTGTTACTG  650

seq1  GAGGTTTAA-TTAGATTTGTTCAAAATATGCACCATATA-TTTAAAGATT  698
      ||||||||| |||||||||||| |||||||||||||||| ||||||||||
seq2  GAGGTTTAATTTAGATTTGTTC-AAATATGCACCATATATTTTAAAGATT  699


| Home | SequenceCutter | Blast | Download |