BAC Information

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BAC

Clone NameB6Ng01-210J20
Chromosome15 (Build37)
Map Location 16,962,277 - 16,963,428
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040087, LOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210J20.bB6Ng01-210J20.g
ACCGA028911GA028912
length1,1921,150
definitionB6Ng01-210J20.b B6Ng01-210J20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaatatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacagggtgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatatgaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacactggttgtatcgtgtagaagaatgcgaatcgatccatactatctcc
ttgtactaaggtcaaatctagtggatcaggacttcacataaaccagaaga
cactgaaactatagagagaagtgggaaaagctgagaatggcacaggggaa
aaatctgaaccgacagcaatggctgtgctgcagatcggaatcgacatgga
actatgacttcaagttcgcaagcaaagaaacactcggttcat

gaattctattgagtaatctggtcaaggattttgaatccaatttaggtaag
taagataagaggaaatagttattacagtaaattcaaatttcaatcaaata
aaatcccatccagttttagaccttctaacctttgcagaactaattcaaaa
taaatcgtaatcctaactgtaaaatgcaaatctatactcattcttgagta
taaaataggaaaacatagcattggatatgataatccatttttaggtatac
attgaaagataaaattcacaaaataaataattgccaagctgaacgtcatt
aaaatggactgcatctgtccattgaaagaaaatgagagacagtggacaga
aatacatcaaaacttttatcaaaaatatgaaaagaaatataattctacca
caaaaataaatattaactaaatttaaaatgagacaaaattttagggaaag
gtgacaagagcatatttaataattaaataagcagagtaaaacaaagtaat
acaccatctaatttggaaaatgcaaatgaaaaccaaaacaaaatacattg
tccatctatgcaaaggcccatggaatatccattgaactgaatgacagcaa
ggtagtacaaaaactgccctccctacttcctagtgtgaattaaaatgggc
aaaaagcaaatttagttgtataatataaaatgaagctaactcatatttta
caagctaagaataacattactttatatatactttatatttactactttat
atttcaaacaatttgaaaatgttttatccaaataaattacatgtatattt
agataatatttttatatacaacctaatttggaatgaaaataatgtggcta
gaggcaacagattaaaacagtggtgcatctaggggaggaggtattacaat
ggtaacattgattagatgatcataaaaggatttaaattaagtgagagcat
ctaacctgtattaatatatacagggtatgactccagattgttataaataa
ttgggaaggagaagatggtgagattttgtaatttcttaggtattgaaatg
gggagctgagttaaaaagaataaaggagggatcttaggtaaatcccatta
tcttggtgtgattatatacaaattattggtgtaaattgatttacaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16962277_16963428
seq2: B6Ng01-210J20.g_66_1215

seq1  GAATTCTATTGAGTAATCTGGTCAAGGATTTTGAATCCAATTTAGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGAGTAATCTGGTCAAGGATTTTGAATCCAATTTAGGTAAG  50

seq1  TAAGATAAGAGGAAATAGTTATTACAGTAAATTCAAATTTCAATCAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAAGAGGAAATAGTTATTACAGTAAATTCAAATTTCAATCAAATA  100

seq1  AAATCCCATCCAGTTTTAGACCTTCTAACCTTTGCAGAACTAATTCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCATCCAGTTTTAGACCTTCTAACCTTTGCAGAACTAATTCAAAA  150

seq1  TAAATCGTAATCCTAACTGTAAAATGCAAATCTATACTCATTCTTGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCGTAATCCTAACTGTAAAATGCAAATCTATACTCATTCTTGAGTA  200

seq1  TAAAATAGGAAAACATAGCATTGGATATGATAATCCATTTTTAGGTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGGAAAACATAGCATTGGATATGATAATCCATTTTTAGGTATAC  250

seq1  ATTGAAAGATAAAATTCACAAAATAAATAATTGCCAAGCTGAACGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGATAAAATTCACAAAATAAATAATTGCCAAGCTGAACGTCATT  300

seq1  AAAATGGACTGCATCTGTCCATTGAAAGAAAATGAGAGACAGTGGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACTGCATCTGTCCATTGAAAGAAAATGAGAGACAGTGGACAGA  350

seq1  AATACATCAAAACTTTTATCAAAAATATGAAAAGAAATATAATTCTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCAAAACTTTTATCAAAAATATGAAAAGAAATATAATTCTACCA  400

seq1  CAAAAATAAATATTAACTAAATTTAAAATGAGACAAAATTTTAGGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAATATTAACTAAATTTAAAATGAGACAAAATTTTAGGGAAAG  450

seq1  GTGACAAGAGCATATTTAATAATTAAATAAGCAGAGTAAAACAAAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGAGCATATTTAATAATTAAATAAGCAGAGTAAAACAAAGTAAT  500

seq1  ACACCATCTAATTTGGAAAATGCAAATGAAAACCAAAACAAAATACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCTAATTTGGAAAATGCAAATGAAAACCAAAACAAAATACATTG  550

seq1  TCCATCTATGCAAAGGCCCATGGAATATCCATTGAACTGAATGACAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTATGCAAAGGCCCATGGAATATCCATTGAACTGAATGACAGCAA  600

seq1  GGTAGTACAAAAACTGCCCTCCCTACTTCCTAGTGTGAATTAAAATGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTACAAAAACTGCCCTCCCTACTTCCTAGTGTGAATTAAAATGGGC  650

seq1  AAAAAGCAAATTTAGTTGTATAATATAAAATGAAGCTAACTCATATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAATTTAGTTGTATAATATAAAATGAAGCTAACTCATATTTTA  700

seq1  CAAGCTAAGAATAACATTACTTTATATATACTTTATATTTACTACTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAAGAATAACATTACTTTATATATACTTTATATTTACTACTTTAT  750

seq1  ATTTCAAACAATTTGAAAATGTTTTATCCAAATAAATTACATGTATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACAATTTGAAAATGTTTTATCCAAATAAATTACATGTATATTT  800

seq1  AGATAATATTTTTATATACAACCTAATTTGGAATGAAAATAATGTGGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATTTTTATATACAACCTAATTTGGAATGAAAATAATGTGGCTA  850

seq1  GAGGCAACAGATTAAAACAGTGGTGCATCTAGGGGAGGAGGTATTACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACAGATTAAAACAGTGGTGCATCTAGGGGAGGAGGTATTACAAT  900

seq1  GGTAACATTGATTAGATGATCATAAAAGGATTTAAA-TAAGTGAGAGCAT  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTAACATTGATTAGATGATCATAAAAGGATTTAAATTAAGTGAGAGCAT  950

seq1  CTAACCTGTA-TAATATATACAGGGTATGACTCCAGAT--GTATAAATAA  996
      |||||||||| |||||||||||||||||||||||||||   |||||||||
seq2  CTAACCTGTATTAATATATACAGGGTATGACTCCAGATTGTTATAAATAA  1000

seq1  TT-GGAAGGAGAAGATGGTGAAGATTTGTAATTTC-TAGGTATTGAAATG  1044
      || ||||||||||||||||||   ||||||||||| ||||||||||||||
seq2  TTGGGAAGGAGAAGATGGTGAGATTTTGTAATTTCTTAGGTATTGAAATG  1050

seq1  GGGAAGCTGAGTTAAAAAGAATAAA-GAGGGATCTTAAGTAAATCCAATT  1093
      ||| ||||||||||||||||||||| ||||||||||| |||||||| |||
seq2  GGG-AGCTGAGTTAAAAAGAATAAAGGAGGGATCTTAGGTAAATCCCATT  1099

seq1  ATCTT-GTGTGAATTATATTACAATAATT-GTGTAAAATGATATAACATA  1141
      ||||| ||||| |||||||   ||| ||| ||||||| |||| ||  |||
seq2  ATCTTGGTGTG-ATTATATACAAATTATTGGTGTAAATTGATTTACAATA  1148

seq1  AAAGCAATAAA  1152
      ||         
seq2  AA---------  1150


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