BAC Information

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BAC

Clone NameB6Ng01-211I07
Chromosome15 (Build37)
Map Location 100,489,954 - 100,621,305
singlet/doubletdoublet
Overlap geneBin2, Ela1, Galnt6, Slc4a8
Upstream geneLOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728
Downstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211I07.bB6Ng01-211I07.g
ACCGA029565GA029566
length1,1291,039
definitionB6Ng01-211I07.b B6Ng01-211I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,620,192 - 100,621,305)(100,489,954 - 100,490,971)
sequence
gaattccttcacctccaacgggcacgcgtgcgcgcgcgcgcgcacacaca
cacacacacacacacacactccaatgagcagggacacagcctctcagttt
ttatccctgccgtgggtatctaagagataaaacttggcgcttatcgaagt
acgtggagttttcagaggaacccaagctcggtgtgcaggtgtacacctgt
aaagccacccgctccagaggctaggggagggggactgccaagctgagggc
caacctgggctagagagtgagacaatctccactggagaggcaagattcac
agagattctgggagtgtgtttgaatctagaagggctccctagtgaacact
tctgtgaaagaatcaaagatcaaacagcccacgcttgcctgtgcccactg
agacgtgcaccagggaaactctacagcacagagcaacggtgtgggacagc
aagccacagcttacacgtgacatgtaagggcatgtcctgaccctacgcag
actcgtcttgtttccatggaatagaagtatttccttatgcaaatgacatc
aatgtatttaattagccatagtctcaggaaggttaactcaggtttcacaa
gtgacattaaacacaaagtctacacattctactttgattttctgcatctt
taattccttgaaaaggggagagttaagtggccatagtgctaaatgcttac
aatcccagcactgggtgttcgaggccagcctgggctacacagtaagaagc
tggaaagcaaagagatagaacagcaagaaagacctcccgggggcttgcct
cactcttcattggctctcagaaacggtcccttgaactgctcccagcagac
actgtgacaaccatcattttatcccaacaacgcattcagttttctgggag
agagtgagcactcagcatttacgagagaatgaggagggcagcggcggcat
gtacctcgtccgtcatgatggtggccatggacctgccaatctcatggtac
tgctggcccttttcccactggggcccagtagataacaaaaaccctgccag
agaaccacaccaaagaagggagctctgtaaggcaagggacagaaggcctg
gggcgtttaacctttcctcaaacagcaaa
gaattctatcgactaactgtgtgcacaggaggtcagaggacaactccagt
cgtgggctctccctgctgcatgggttctagggcttgaatttttacatcac
tgagcttagcagccaggacctttacccagaggcaccctgccagaaccaga
gttcaattcccagcacatccactgttaagttcagcctcagaaatccaaca
tcttcccctgggtacctgcacatgccagtgtgtcctcacagacacacaca
cacatacacatagataaaaacaaatctttttttaaaaatgaatgaacatt
taactctctttcttgaaagtcaacaatatggacttaacttttcactttgt
catgacgatttggtttcaaaacactatgactggtaagagctgtcagacca
agtggacaatgtgtgacgtttagaggacgttgtgagttcggttcacagag
cccttcctgtaagtccagctccagagtatctgacagactgtgtcctcccc
aggactcacatgcaggcagcaggtctagatggagcctgtggtgagctgcc
caacaagagtgcaggaggcagaagttgggtgttctgcaagagttttacac
tctcaccccctgaaccatgtgcagcttcgcgtgcccgtcttcctttgaac
cctgttcttcgggagtagtcagggagggggcgagggtggggtgggctcca
ggacgagggacagcactggactctgtttcatgtctcagacctgtccatct
tcccctgaaatgcctaggctaggccatctcagaccgtcttccctggcaga
caagacgctcacagccaggctcttacgtctgtctgtctatctgtctgtct
gtctggtcgtcaggcacttggctctattctcaagctagcaaggttagttc
gctttctctggccttcagtctcctccgtcttgaaggtgcatggccatttt
ctatctctgggattctggcctgatctccaatcactccctgccatcttgaa
cctctggccagtgtccatgggcatttgccataaagagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100620192_100621305
seq2: B6Ng01-211I07.b_47_1175 (reverse)

seq1  TTTGCTGTTTG-GAGAAGGTAAAACG--CCAG--CCTCTGT-CCTTG-CT  43
      ||||||||||| |  ||||| |||||  ||||  | ||||| ||||| ||
seq2  TTTGCTGTTTGAGGAAAGGTTAAACGCCCCAGGCCTTCTGTCCCTTGCCT  50

seq1  TACAGAGCT-CCTTCTTT-GTGTG---TTCTGGCAGGTTTTTGTTTATCT  88
      ||||||||| |||||||| |||||    ||||||||| ||||  ||||| 
seq2  TACAGAGCTCCCTTCTTTGGTGTGGTTCTCTGGCAGGGTTTTTGTTATC-  99

seq1  TACTGGG-CCCAGTGGGAAAAGGG-CAGCAGTACCATGAGATTGGCAGGT  136
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  TACTGGGCCCCAGTGGGAAAAGGGCCAGCAGTACCATGAGATTGGCAGGT  149

seq1  CCATGGCCACCATCATGACGGACGAGGTACATGCCGCCGCTGCCCTCCTC  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCACCATCATGACGGACGAGGTACATGCCGCCGCTGCCCTCCTC  199

seq1  ATTCTCTCGTAAATGCTGAGTGCTCACTCTCTCCCAG-AAACTGAATGCG  235
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCTCTCGTAAATGCTGAGTGCTCACTCTCTCCCAGAAAACTGAATGCG  249

seq1  TTGTTGGGATAAAATGATGGTTGTCACAGTGTCTGCTGGGAGCAGTTCAA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGATAAAATGATGGTTGTCACAGTGTCTGCTGGGAGCAGTTCAA  299

seq1  -GGACCGTTTCTGAGAGCCAATGAAGAGTGAGGCAAGCCCCCGGGAGGTC  334
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCGTTTCTGAGAGCCAATGAAGAGTGAGGCAAGCCCCCGGGAGGTC  349

seq1  TTTCTTGCTGTTCTATCTCTTTGCTTTCCAGCTTCTTACTGTGTAGCCCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCTGTTCTATCTCTTTGCTTTCCAGCTTCTTACTGTGTAGCCCA  399

seq1  GGCTGGCCTCGAACACCCAGTGCTGGGATTGTAAGCATTTAGCACTATGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCGAACACCCAGTGCTGGGATTGTAAGCATTTAGCACTATGG  449

seq1  CCACTTAACTCTCCCCTTTTCAAGGAATTAAAGATGCAGAAAATCAAAGT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAACTCTCCCCTTTTCAAGGAATTAAAGATGCAGAAAATCAAAGT  499

seq1  AGAATGTGTAGACTTTGTGTTTAATGTCACTTGTGAAACCTGAGTTAACC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGTAGACTTTGTGTTTAATGTCACTTGTGAAACCTGAGTTAACC  549

seq1  TTCCTGAGACTATGGCTAATTAAATACATTGATGTCATTTGCATAAGGAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGACTATGGCTAATTAAATACATTGATGTCATTTGCATAAGGAA  599

seq1  ATACTTCTATTCCATGGAAACAAGACGAGTCTGCGTAGGGTCAGGACATG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTATTCCATGGAAACAAGACGAGTCTGCGTAGGGTCAGGACATG  649

seq1  CCCTTACATGTCACGTGTAAGCTGTGGCTTGCTGTCCCACACCGTTGCTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACATGTCACGTGTAAGCTGTGGCTTGCTGTCCCACACCGTTGCTC  699

seq1  TGTGCTGTAGAGTTTCCCTGGTGCACGTCTCAGTGGGCACAGGCAAGCGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTAGAGTTTCCCTGGTGCACGTCTCAGTGGGCACAGGCAAGCGT  749

seq1  GGGCTGTTTGATCTTTGATTCTTTCACAGAAGTGTTCACTAGGGAGCCCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTTGATCTTTGATTCTTTCACAGAAGTGTTCACTAGGGAGCCCT  799

seq1  TCTAGATTCAAACACACTCCCAGAATCTCTGTGAATCTTGCCTCTCCAGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTCAAACACACTCCCAGAATCTCTGTGAATCTTGCCTCTCCAGT  849

seq1  GGAGATTGTCTCACTCTCTAGCCCAGGTTGGCCCTCAGCTTGGCAGTCCC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTGTCTCACTCTCTAGCCCAGGTTGGCCCTCAGCTTGGCAGTCCC  899

seq1  CCTCCCCTAGCCTCTGGAGCGGGTGGCTTTACAGGTGTACACCTGCACAC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTAGCCTCTGGAGCGGGTGGCTTTACAGGTGTACACCTGCACAC  949

seq1  CGAGCTTGGGTTCCTCTGAAAACTCCACGTACTTCGATAAGCGCCAAGTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTTGGGTTCCTCTGAAAACTCCACGTACTTCGATAAGCGCCAAGTT  999

seq1  TTATCTCTTAGATACCCACGGCAGGGATAAAAACTGAGAGGCTGTGTCCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTTAGATACCCACGGCAGGGATAAAAACTGAGAGGCTGTGTCCC  1049

seq1  TGCTCATTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCG  1099

seq1  CACGCGTGCCCGTTGGAGGTGAAGGAATTC  1114
      ||||||||||||||||||||||||||||||
seq2  CACGCGTGCCCGTTGGAGGTGAAGGAATTC  1129

seq1: chr15_100489954_100490971
seq2: B6Ng01-211I07.g_67_1105

seq1  GAATTCTATCGACTAACTGTGTGCACAGGAGGTCAGAGGACAACTCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCGACTAACTGTGTGCACAGGAGGTCAGAGGACAACTCCAGT  50

seq1  CGTGGGCTCTCCCTGCTGCATGGGTTCTAGGGCTTGAATTTTTACATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGCTCTCCCTGCTGCATGGGTTCTAGGGCTTGAATTTTTACATCAC  100

seq1  TGAGCTTAGCAGCCAGGACCTTTACCCAGAGGCACCCTGCCAGAACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTAGCAGCCAGGACCTTTACCCAGAGGCACCCTGCCAGAACCAGA  150

seq1  GTTCAATTCCCAGCACATCCACTGTTAAGTTCAGCCTCAGAAATCCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCAGCACATCCACTGTTAAGTTCAGCCTCAGAAATCCAACA  200

seq1  TCTTCCCCTGGGTACCTGCACATGCCAGTGTGTCCTCACAGACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTGGGTACCTGCACATGCCAGTGTGTCCTCACAGACACACACA  250

seq1  CACATACACATAGATAAAAACAAATCTTTTTTTAAAAATGAATGAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACATAGATAAAAACAAATCTTTTTTTAAAAATGAATGAACATT  300

seq1  TAACTCTCTTTCTTGAAAGTCAACAATATGGACTTAACTTTTCACTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCTTTCTTGAAAGTCAACAATATGGACTTAACTTTTCACTTTGT  350

seq1  CATGACGATTTGGTTTCAAAACACTATGACTGGTAAGAGCTGTCAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACGATTTGGTTTCAAAACACTATGACTGGTAAGAGCTGTCAGACCA  400

seq1  AGTGGACAATGTGTGACGTTTAGAGGACGTTGTGAGTTCGGTTCACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACAATGTGTGACGTTTAGAGGACGTTGTGAGTTCGGTTCACAGAG  450

seq1  CCCTTCCTGTAAGTCCAGCTCCAGAGTATCTGACAGACTGTGTCCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTGTAAGTCCAGCTCCAGAGTATCTGACAGACTGTGTCCTCCCC  500

seq1  AGGACTCACATGCAGGCAGCAGGTCTAGATGGAGCCTGTGGTGAGCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCACATGCAGGCAGCAGGTCTAGATGGAGCCTGTGGTGAGCTGCC  550

seq1  CAACAAGAGTGCAGGAGGCAGAAGTTGGGTGTTCTGCAAGAGTTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAGTGCAGGAGGCAGAAGTTGGGTGTTCTGCAAGAGTTTTACAC  600

seq1  TCTCACCCCCTGAACCATGTGCAGCTTCGCGTGCCCGTCTTCCTTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCCCTGAACCATGTGCAGCTTCGCGTGCCCGTCTTCCTTTGAAC  650

seq1  CCTGTTCTTCGGGAGTAGTCAGGGAGGGGGCGAGGGTGGGGTGGGCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTTCGGGAGTAGTCAGGGAGGGGGCGAGGGTGGGGTGGGCTCCA  700

seq1  GGACGAGGGACAGCACTGGACTCTGTTTCATGTCTCAGACCTGTCCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGGGACAGCACTGGACTCTGTTTCATGTCTCAGACCTGTCCATCT  750

seq1  TCCCCTGAAATGCCTAGGCTAGGCCATCTCAGACCGTCTTCCCTGGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAAATGCCTAGGCTAGGCCATCTCAGACCGTCTTCCCTGGCAGA  800

seq1  CAAGACGCTCACAGCCAGGCTCTTACGTCTGTCTGTCTATCTGTCTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACGCTCACAGCCAGGCTCTTACGTCTGTCTGTCTATCTGTCTGTCT  850

seq1  GTCTGGTCGTCAGGCACTTGGCTCTATTCTC-AGCTAGC-AGGTTAGTTC  898
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GTCTGGTCGTCAGGCACTTGGCTCTATTCTCAAGCTAGCAAGGTTAGTTC  900

seq1  GC-TTCTCTGG-CTTCAGT-TCC-CCGTC-TGAA-GTGCAGGGCCA-TTT  941
      || |||||||| ||||||| ||| ||||| |||| ||||| ||||| |||
seq2  GCTTTCTCTGGCCTTCAGTCTCCTCCGTCTTGAAGGTGCATGGCCATTTT  950

seq1  CTATCTCTGG--ATCTG--CTGATCTC--ATCACT-CCTGCCATC-TGAA  983
      ||||||||||   ||||  ||||||||  |||||| ||||||||| ||||
seq2  CTATCTCTGGGATTCTGGCCTGATCTCCAATCACTCCCTGCCATCTTGAA  1000

seq1  CCTCT-GCCA--GTCCCTTGGCA-TTGCCATAAAGAGCC  1018
      ||||| ||||  |||| | |||| |||||||||||||||
seq2  CCTCTGGCCAGTGTCCATGGGCATTTGCCATAAAGAGCC  1039