BAC Information

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BAC

Clone NameB6Ng01-211J01
Chromosome15 (Build37)
Map Location 100,248,573 - 100,249,681
singlet/doubletsinglet
Overlap geneSlc11a2
Upstream geneC230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4
Downstream geneEG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211J01.bB6Ng01-211J01.g
ACCGA029599GA029600
length1,1341,166
definitionB6Ng01-211J01.b B6Ng01-211J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacaagccttatccaagcaggatgacaaagaacgcagatcc
atcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctg
ctgaggtgctggctgaaggagaaggaaatacagaatgggtagtagaggaa
ggtagttataaataccaattaaggccacgtaaccagttgcagaaacgagg
attataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcga
ttgtacgagggatagttatatcatgttaggcgtattttacaaccttgtta
ttgtttcatgtgaacatgagatattatttgtgtcaagttgacaaggggtg
gattgtagtggctattcctggttgtcaactgaacatatttgggaatgaac
tacaatccggaattggaaaggctcaccagtgacccttatcctggaggctt
gggagatcctattctgggaatctgggtgaagaactctgaagccatattgg
ctatgggatctctaatgaatagaatctccggaga
gaattctttccacttgaatgactgggaaccaaactgctgttgttttcata
tttgcagacagagccgatcaagactgctagtgtatctccctccctgccca
ctccagagccttgaccctgtgaggcccatgcaagggaggcactgggcagc
ctcctttcctccttgctttaaggacagcgcactgcttttctgttaaaatc
ccaggctaatgtagcaatcggtctcagacttcccatcaaggatttctgac
aatcttcaggtatctgtcgatacctagtgggagtgaggggaaagaaacag
atccctgcggtagtaagtttagaattagtatttacattaaagggagcatg
ttgacccatacctgaattagagacaagtctggtctaccagtggtatatag
agacttggcttcacacacacacacacacacacactcactcacgtaaacct
gtggttcacacctacagtcactgggaggaccaaggaggaagaggcaggaa
gatcaaaaatttagaaattcaagctcaactttagctacctcgtaagccaa
atgccagtctggtgtacatgagactctgtctcaacaaagaaacaagatat
gacaatgttttagcctattttctcttatgaaaatgaattttgaggactgg
gcaataactcagctacacagtgcttacctagtgtgtacaaacccataggt
ttgatcacaatgcctctaatatacatgcacacacatgcatatataatata
tatatttacacacatacatatatatacacaaatacatacacacgtgtata
tatatatatatatatacacaacaaacacactctcgagtgcacatacgcat
gcacacacacatgcatatatatatatacacacatacacacacatatacat
atatacacactcgttgagtgcacatacacaacacacacaccacaccatac
aatacacatgcactcacacaaaacaatacacacaccacactcggggaagt
gcacaatacaacatgccacacaacatacattatgccaggcccattacaca
ccacccccagtaaaggaactggaacttgaaaccaaaaagagatgaaggga
aagaaaaaaaggacagggcttcggatttcactctccaaggtatagggcct
ttttaatctcaggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100248573_100249681
seq2: B6Ng01-211J01.g_65_1230

seq1  GAATTCTTTCCACTTGAATGACTGGGAACCAAACTGCTGTTGTTTTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCACTTGAATGACTGGGAACCAAACTGCTGTTGTTTTCATA  50

seq1  TTTGCAGACAGAGCCGATCAAGACTGCTAGTGTATCTCCCTCCCTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGACAGAGCCGATCAAGACTGCTAGTGTATCTCCCTCCCTGCCCA  100

seq1  CTCCAGAGCCTTGACCCTGTGAGGCCCATGCAAGGGAGGCACTGGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCCTTGACCCTGTGAGGCCCATGCAAGGGAGGCACTGGGCAGC  150

seq1  CTCCTTTCCTCCTTGCTTTAAGGACAGCGCACTGCTTTTCTGTTAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCTCCTTGCTTTAAGGACAGCGCACTGCTTTTCTGTTAAAATC  200

seq1  CCAGGCTAATGTAGCAATCGGTCTCAGACTTCCCATCAAGGATTTCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAATGTAGCAATCGGTCTCAGACTTCCCATCAAGGATTTCTGAC  250

seq1  AATCTTCAGGTATCTGTCGATACCTAGTGGGAGTGAGGGGAAAGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGGTATCTGTCGATACCTAGTGGGAGTGAGGGGAAAGAAACAG  300

seq1  ATCCCTGCGGTAGTAAGTTTAGAATTAGTATTTACATTAAAGGGAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCGGTAGTAAGTTTAGAATTAGTATTTACATTAAAGGGAGCATG  350

seq1  TTGACCCATACCTGAATTAGAGACAAGTCTGGTCTACCAGTGGTATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCATACCTGAATTAGAGACAAGTCTGGTCTACCAGTGGTATATAG  400

seq1  AGACTTGGCTTCACACACACACACACACACACACTCACTCACGTAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGCTTCACACACACACACACACACACACTCACTCACGTAAACCT  450

seq1  GTGGTTCACACCTACAGTCACTGGGAGGACCAAGGAGGAAGAGGCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCACACCTACAGTCACTGGGAGGACCAAGGAGGAAGAGGCAGGAA  500

seq1  GATCAAAAATTTAGAAATTCAAGCTCAACTTTAGCTACCTCGTAAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAAATTTAGAAATTCAAGCTCAACTTTAGCTACCTCGTAAGCCAA  550

seq1  ATGCCAGTCTGGTGTACATGAGACTCTGTCTCAACAAAGAAACAAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTCTGGTGTACATGAGACTCTGTCTCAACAAAGAAACAAGATAT  600

seq1  GACAATGTTTTAGCCTATTTTCTCTTATGAAAATGAA-TTTGAGGACTGG  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GACAATGTTTTAGCCTATTTTCTCTTATGAAAATGAATTTTGAGGACTGG  650

seq1  GCAATAACTCAGCCACACAGTGCTTACCTAGTGTGTACAAACCCATAGGT  699
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCAATAACTCAGCTACACAGTGCTTACCTAGTGTGTACAAACCCATAGGT  700

seq1  TTGATCACAATGCCTCTAATATACATGCACACACATGCATATATAATATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACAATGCCTCTAATATACATGCACACACATGCATATATAATATA  750

seq1  TATATTTACACACATACATATATATACACAAATACATACACACGTGTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTACACACATACATATATATACACAAATACATACACACGTGTATA  800

seq1  TATATATATATATATACAC-ACAAACACACTCTCGAGTGCACATACGCAT  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATATATATATATATACACAACAAACACACTCTCGAGTGCACATACGCAT  850

seq1  GCACACACACATGCATATATATATATACACACATACACACACATATACAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACATGCATATATATATATACACACATACACACACATATACAT  900

seq1  ATATACACACTCG-TGAGTGCACATACAC-ACACACACA-CACA-CATAC  944
      ||||||||||||| ||||||||||||||| ||||||||| |||| |||||
seq2  ATATACACACTCGTTGAGTGCACATACACAACACACACACCACACCATAC  950

seq1  -ATACACATGCACTCACACAAACAAATACACACA-CACACTCGGG--AGT  990
       |||||||||||||||||||||  |||||||||| ||||||||||  |||
seq2  AATACACATGCACTCACACAAAACAATACACACACCACACTCGGGGAAGT  1000

seq1  GCAC-ATAC-ACATG-CACAC-ACATACA-TATG-CAAGCACA-TACACA  1033
      |||| |||| ||||| ||||| ||||||| |||| || || || ||||||
seq2  GCACAATACAACATGCCACACAACATACATTATGCCAGGCCCATTACACA  1050

seq1  -CACACACAG--AAAGAACTG--ACATGAAAC---AAAAAGATGA--GGA  1073
       ||| | |||  || ||||||  || ||||||   ||| ||||||  |||
seq2  CCACCCCCAGTAAAGGAACTGGAACTTGAAACCAAAAAGAGATGAAGGGA  1100

seq1  AAGAAAAA---GGCA-GGCTATGGTTTTCA-TCTC--AGGT-TA------  1109
      ||||||||   | || ||||  || ||||| ||||  |||| ||      
seq2  AAGAAAAAAAGGACAGGGCTTCGGATTTCACTCTCCAAGGTATAGGGCCT  1150

seq1  ----------------  1109
                      
seq2  TTTTAATCTCAGGTTA  1166