BAC Information

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BAC

Clone NameB6Ng01-211L08
Chromosome15 (Build37)
Map Location 51,253,973 - 51,403,067
singlet/doubletdoublet
Overlap geneLOC100039662
Upstream geneTrps1, LOC100039644
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211L08.bB6Ng01-211L08.g
ACCGA029698GA029699
length1,1991,172
definitionB6Ng01-211L08.b B6Ng01-211L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,253,973 - 51,255,163)(51,401,893 - 51,403,067)
sequence
gaattccacaagagtggtagggacataactcaggtactaaagcacttgct
gttcagaagagagggaccaagtgtgaatacagaggacccagaagagacct
gatcatggcaatgtgtgcctgaaaccttagtgttcataaagagagatagg
agaaccttccaggagaaccgcagggtcttactgagccagctaccttggca
tatgcagaagtaactgacaaaatagatcttgtctcaaatatggtggaaga
aaaaaaacaacactcaaatttgtcttctgacagccccccaacctgtgcca
tgccaacacacacacacacacacacacacacacacacacacacacacaca
cacacacacaccaggatttttaaaattccatgtgactaaattatgctcaa
tctgtaagaaaaaattaattaaattcaaattcaaaagtggatctttattt
ttagctaacttttcatttcttgctaatcaagatgaaggacattttcttgt
tcaggatacttgttcaagagaaatacatctttgcatgtgaataaggactg
agggagaagtgtatttttaaaagtaaaaataggttcatctaaacaataaa
aatgctatagcataatcagatgttttatacaataatatttgtggtcaatg
aattatgttctaaaaattgtttctaaaccttttcctgagttgtccaattt
ccaagatatgaactggaatacaataacaataaccaataattgaaattgac
atctcaatcaaaacatccttcaaacgtgcacaattagtttatatttccac
ttactgctgagatttgtataagatagaaaacctcacacattcaggataga
taattaaaaggcagacatagcaaagtcattcaaacctgttcccaaagctg
ttgaatgacggagggctttgtcaattcagactatacagagaagataccct
ttaagtttacttccaattactagcatcccaaaagtaaatacagcaaatac
aaagtttagaatttagaacaacatacaacatgtagaaatttggattggtg
ggcttcatgccattagtgccctaatgtggggcagaatgctatccaaccca
ctgaaagactggtttgagttaacacatagaaaaagagggtatatccgtcc
tgccatcctagacctccagaaaaaccattttctcctcatcacattggtc

gaattcatttaagatactgtgaaaaatcaatattgtttattcttactact
gaatgaatgaaattcatttataatgttgcttacagttggtgatttctcat
tcatcccttggttcttgaaatagctagaagtttcctgatgctagaatgat
aactatccaaatatgtcctcattctaatgccgctatatgttacctaagta
ggcaaaagaaatttttactgagggcattaagttgagggtctttaaacggg
gatatttactgcatcccccacccccataaatctccatgagaggaagatga
gggagtcaagttctgaggggagatgtgatggaaacaggaggctaatgtga
tgtgccttcaaggtggagaaaggtttcaatacaaggatggcccatagcac
tctgcatgagaagtggcgacaaaatagatctacccttggcttcttcacag
ggacagaagttacactgattcatgatttttacctagtagatacagtttaa
aatgaagaactaaaaactatatgaaaataatctgttgctttaagcctgga
agatcaagttattcataccatcaatgggaaaatggtacaggctgcttatg
ggaagtgccatatggaacaattctagtacatgtattttgatatcaaacag
tcatattctcagagggagatggctgagtcacaggatgtgagtatttcaac
tgcaggtgatgatgccaaataagtttctagtgtggaaacacttaaatgcc
ctcccatgggaagcgataagcattctgactctttgcatgtctgtcaacat
ttcaactctgacttggatagaaattctatgattgtatactggtatcactt
tgtgatttcaactattttttcctggtggagactaatgttgctaggtactc
tttcaaattattgaacatttgagtattcagattcaagtgtttagcaaccc
cctttctttctgttggttctctacctgttcattattttggctgtagaaat
caactcagattctttttctactgaactgacatgtacatcaaagttatttt
ctctgtattccatttttctcctcaatttctttcattgcgaatggcaatta
ctccattaattggatctgttcttagaagtgactcattggttccgaagttg
ggccttaccattttttttagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51253973_51255163
seq2: B6Ng01-211L08.b_47_1245

seq1  GAATTCCACAAGAGTGGTAGGGACATAACTCAGGTACTAAAGCACTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGAGTGGTAGGGACATAACTCAGGTACTAAAGCACTTGCT  50

seq1  GTTCAGAAGAGAGGGACCAAGTGTGAATACAGAGGACCCAGAAGAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGAGAGGGACCAAGTGTGAATACAGAGGACCCAGAAGAGACCT  100

seq1  GATCATGGCAATGTGTGCCTGAAACCTTAGTGTTCATAAAGAGAGATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGCAATGTGTGCCTGAAACCTTAGTGTTCATAAAGAGAGATAGG  150

seq1  AGAACCTTCCAGGAGAACCGCAGGGTCTTACTGAGCCAGCTACCTTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTTCCAGGAGAACCGCAGGGTCTTACTGAGCCAGCTACCTTGGCA  200

seq1  TATGCAGAAGTAACTGACAAAATAGATCTTGTCTCAAATATGGTGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGAAGTAACTGACAAAATAGATCTTGTCTCAAATATGGTGGAAGA  250

seq1  AAAAAAACAACACTCAAATTTGTCTTCTGACAGCCCCCCAACCTGTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAACACTCAAATTTGTCTTCTGACAGCCCCCCAACCTGTGCCA  300

seq1  TGCCAACACACACACACACACACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACACACACACACACACACACACACACACACACACACACACACACA  350

seq1  CACACACACACCAGGATTTTTAAAATTCCATGTGACTAAATTATGCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCAGGATTTTTAAAATTCCATGTGACTAAATTATGCTCAA  400

seq1  TCTGTAAGAAAAAATTAATTAAATTCAAATTCAAAAGTGGATCTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGAAAAAATTAATTAAATTCAAATTCAAAAGTGGATCTTTATTT  450

seq1  TTAGCTAACTTTTCATTTCTTGCTAATCAAGATGAAGGACATTTTCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAACTTTTCATTTCTTGCTAATCAAGATGAAGGACATTTTCTTGT  500

seq1  TCAGGATACTTGTTCAAGAGAAATACATCTTTGCATGTGAATAAGGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATACTTGTTCAAGAGAAATACATCTTTGCATGTGAATAAGGACTG  550

seq1  AGGGAGAAGTGTATTTTTAAAAGTAAAAATAGGTTCATCTAAACAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGTGTATTTTTAAAAGTAAAAATAGGTTCATCTAAACAATAAA  600

seq1  AATGCTATAGCATAATCAGATGTTTTATACAATAATATTTGTGGTCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATAGCATAATCAGATGTTTTATACAATAATATTTGTGGTCAATG  650

seq1  AATTATGTTCTAAAAATTGTTTCTAAACCTTTTCCTGAGTTGTCCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTTCTAAAAATTGTTTCTAAACCTTTTCCTGAGTTGTCCAATTT  700

seq1  CCAAGATATGAACTGGAATACAATAACAATAACCAATAATTGAAATTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATATGAACTGGAATACAATAACAATAACCAATAATTGAAATTGAC  750

seq1  ATCTCAATCAAAACATCCTTCAAACGTGCACAATTAGTTTATATTTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAATCAAAACATCCTTCAAACGTGCACAATTAGTTTATATTTCCAC  800

seq1  TTACTGCTGAGATTTGTATAAGATAGAAAACCTCACACATTCAGGATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGAGATTTGTATAAGATAGAAAACCTCACACATTCAGGATAGA  850

seq1  TAATTAAAA-GCAGACATAGCAAAGTCATTCAAACCTGTTCCCAAAGCTG  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAGGCAGACATAGCAAAGTCATTCAAACCTGTTCCCAAAGCTG  900

seq1  TTGAATGACGGAGGGCTTTGTCAATTCAGACTATACAGAGAAGATACCC-  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGAATGACGGAGGGCTTTGTCAATTCAGACTATACAGAGAAGATACCCT  950

seq1  TTAAGTTTACTTCCAATTACTAGCATCCCAAAAGTAAATACAGCAAAATA  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAAGTTTACTTCCAATTACTAGCATCCCAAAAGTAAATACAGC-AAATA  999

seq1  CAAAGTTTAGAATTTAGAACAACATACAACATGTAGAAATTTGAATTGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAAGTTTAGAATTTAGAACAACATACAACATGTAGAAATTTGGATTGGT  1049

seq1  GGGCTTCATTGCCATTAGTG-CCTAATGT-GGGCAG-ATGCTATCCAACC  1095
      |||||||| ||||||||||| |||||||| |||||| |||||||||||||
seq2  GGGCTTCA-TGCCATTAGTGCCCTAATGTGGGGCAGAATGCTATCCAACC  1098

seq1  CACTGAAGGACTGGTTTGAGTAAACACATAGAAAAGAGGGGTTATTATCT  1145
      ||||||| ||||||||||||| ||||||||||||| || || || |||| 
seq2  CACTGAAAGACTGGTTTGAGTTAACACATAGAAAA-AGAGGGTA-TATCC  1146

seq1  GT-CTG-CATTCTTGAACT-CAG-AAAACCATTTTCTCC---TACCATTG  1188
      || ||| ||| || || || ||| |||||||||||||||   |  |||||
seq2  GTCCTGCCATCCTAGACCTCCAGAAAAACCATTTTCTCCTCATCACATTG  1196

seq1  GTC  1191
      |||
seq2  GTC  1199


seq1: chr15_51401893_51403067
seq2: B6Ng01-211L08.g_62_1233 (reverse)

seq1  CTCT-AAAAAAATGGTAAGCCCCAAACTTCTGA--CAATGAGTCACTTCT  47
      |||| |||||||||||||| ||| |||||| ||  |||||||||||||||
seq2  CTCTAAAAAAAATGGTAAGGCCC-AACTTCGGAACCAATGAGTCACTTCT  49

seq1  AAG-ACAGAATCAATTTATGAAGTATTTCCCTTTGGGCAATTGAAGAAA-  95
      ||| |||||  ||||| ||| |||| || || ||  |||||  |||||| 
seq2  AAGAACAGATCCAATTAATGGAGTAATTGCCATT-CGCAATGAAAGAAAT  98

seq1  TGA-GAGAAAAATGGGAAATAACAGAGAAAAATAACTTTGATGTACATGG  144
      ||| |||||||||||  ||| |||||| ||||||||||||||||||||| 
seq2  TGAGGAGAAAAATGG--AAT-ACAGAG-AAAATAACTTTGATGTACATG-  143

seq1  TTCAGTTTCAGTAG-AAAAGAATCTGAGTTGATTTCTACAGCCAAAATAA  193
       |||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  -TCAG-TTCAGTAGAAAAAGAATCTGAGTTGATTTCTACAGCCAAAATAA  191

seq1  TTGGAACAGGTAGAGAACCAACAGAAAGAAAGGGGGTTGCTAAACACTTG  243
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  T--GAACAGGTAGAGAACCAACAGAAAGAAAGGGGGTTGCTAAACACTTG  239

seq1  AATCTGAATACTCAAATGTTCAATAATTTGAAAGAGTACCTAGCAACATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAATACTCAAATGTTCAATAATTTGAAAGAGTACCTAGCAACATT  289

seq1  AGTCTCCACCAGG-AAAAATAGTTGAAATCACAAAGTGATACCAGTATAC  342
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCACCAGGAAAAAATAGTTGAAATCACAAAGTGATACCAGTATAC  339

seq1  AATCATAGAATTTCTATCCAAGTCAGAGTTGAAATGTTGACAGACATGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGAATTTCTATCCAAGTCAGAGTTGAAATGTTGACAGACATGCA  389

seq1  AAGAGTCAGAATGCTTATCGCTTCCCATGGGAGGGCATTTAAGTGTTTCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAGAATGCTTATCGCTTCCCATGGGAGGGCATTTAAGTGTTTCC  439

seq1  ACACTAGAAACTTATTTGGCATCATCACCTGCAGTTGAAATACTCACATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAAACTTATTTGGCATCATCACCTGCAGTTGAAATACTCACATC  489

seq1  CTGTGACTCAGCCATCTCCCTCTGAGAATATGACTGTTTGATATCAAAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTCAGCCATCTCCCTCTGAGAATATGACTGTTTGATATCAAAAT  539

seq1  ACATGTACTAGAATTGTTCCATATGGCACTTCCCATAAGCAGCCTGTACC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACTAGAATTGTTCCATATGGCACTTCCCATAAGCAGCCTGTACC  589

seq1  ATTTTCCCATTGATGGTATGAATAACTTGATCTTCCAGGCTTAAAGCAAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCATTGATGGTATGAATAACTTGATCTTCCAGGCTTAAAGCAAC  639

seq1  AGATTATTTTCATATAGTTTTTAGTTCTTCATTTTAAACTGTATCTACTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTCATATAGTTTTTAGTTCTTCATTTTAAACTGTATCTACTA  689

seq1  GGTAAAAATCATGAATCAGTGTAACTTCTGTCCCTGTGAAGAAGCCAAGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAATCATGAATCAGTGTAACTTCTGTCCCTGTGAAGAAGCCAAGG  739

seq1  GTAGATCTATTTTGTCGCCACTTCTCATGCAGAGTGCTATGGGCCATCCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTATTTTGTCGCCACTTCTCATGCAGAGTGCTATGGGCCATCCT  789

seq1  TGTATTGAAACCTTTCTCCACCTTGAAGGCACATCACATTAGCCTCCTGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAAACCTTTCTCCACCTTGAAGGCACATCACATTAGCCTCCTGT  839

seq1  TTCCATCACATCTCCCCTCAGAACTTGACTCCCTCATCTTCCTCTCATGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCACATCTCCCCTCAGAACTTGACTCCCTCATCTTCCTCTCATGG  889

seq1  AGATTTATGGGGGTGGGGGATGCAGTAAATATCCCCGTTTAAAGACCCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATGGGGGTGGGGGATGCAGTAAATATCCCCGTTTAAAGACCCTC  939

seq1  AACTTAATGCCCTCAGTAAAAATTTCTTTTGCCTACTTAGGTAACATATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATGCCCTCAGTAAAAATTTCTTTTGCCTACTTAGGTAACATATA  989

seq1  GCGGCATTAGAATGAGGACATATTTGGATAGTTATCATTCTAGCATCAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCATTAGAATGAGGACATATTTGGATAGTTATCATTCTAGCATCAGG  1039

seq1  AAACTTCTAGCTATTTCAAGAACCAAGGGATGAATGAGAAATCACCAACT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTAGCTATTTCAAGAACCAAGGGATGAATGAGAAATCACCAACT  1089

seq1  GTAAGCAACATTATAAATGAATTTCATTCATTCAGTAGTAAGAATAAACA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAACATTATAAATGAATTTCATTCATTCAGTAGTAAGAATAAACA  1139

seq1  ATATTGATTTTTCACAGTATCTTAAATGAATTC  1175
      |||||||||||||||||||||||||||||||||
seq2  ATATTGATTTTTCACAGTATCTTAAATGAATTC  1172


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