BAC Information

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BAC

Clone NameB6Ng01-212K08
Chromosome15 (Build37)15 (Build37)
Map Location 48,619,683 - 48,620,3506,115,431 - 6,115,728
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCsmd3
Downstream geneEG665146, LOC100039600, LOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212K08.bB6Ng01-212K08.g
ACCGA030390GA030391
length668398
definitionB6Ng01-212K08.b B6Ng01-212K08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,619,683 - 48,620,350)(6,115,431 - 6,115,728)
sequence
gaattctgttgctgtttttatgattttgtgtgcacagtgtattctttgag
aagctttcacaagatactttgcttgcctccctcctcctgatgtgtcagat
aaaagtgttaagattggaaagtgagactgtccttccctggggacatcgac
ctggctgggaacttcaggaaaggttatccaggcatgggagaattgagaaa
aagcacagctcttgctcttccctgctgccttgacactgcttttgacaccg
ccttccagcctgcaggaaagaactgaggattctgtgttgggtcctccctc
ccccagagctctatgtcctgtgtcctggtctttatgtactggaagtccca
gagcaagcaagaaggctcatccttcctgaagtacaaagtccaggagaaat
ccctgaacaggcacctggaaggagagtgaggcacacaacacccagctctc
ctgctgctgctgattggagtctacaccacactgacctcctgcaccatggc
aacccctttcctatcatttcataagtgtgagaaagcacccagtagcttct
ctttacatgggcgggacacttaagatttaggatttacaatttctttctag
gtgaaatccagataccatacagctagaagattcatttcaaattctctctc
tctccccctccccctccc

aagggtcatgagtatttatttcacattaaaaatattggcatgttagacag
tagtttcataatttaaggcattctctatgaagaaactctagaattccagg
tgttcaccattctcttcaattttggtattgtcaatattttaattttagct
ttttgtgattatattttttttcttttttcttttctttttattctttttat
taattaggtattttcttcatttacattttcaatgctatcccaaaagtccc
ccataacccccctctgctccccccccccactcccacttcttggccctggc
gtacccctgtactgaggcatataaagtttgcaagaccaatgggcctctct
ttccaatgatggctgactaggccatcttctgatacatatacagctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48619683_48620350
seq2: B6Ng01-212K08.b_47_714

seq1  GAATTCTGTTGCTGTTTTTATGATTTTGTGTGCACAGTGTATTCTTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCTGTTTTTATGATTTTGTGTGCACAGTGTATTCTTTGAG  50

seq1  AAGCTTTCACAAGATACTTTGCTTGCCTCCCTCCTCCTGATGTGTCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCACAAGATACTTTGCTTGCCTCCCTCCTCCTGATGTGTCAGAT  100

seq1  AAAAGTGTTAAGATTGGAAAGTGAGACTGTCCTTCCCTGGGGACATCGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTAAGATTGGAAAGTGAGACTGTCCTTCCCTGGGGACATCGAC  150

seq1  CTGGCTGGGAACTTCAGGAAAGGTTATCCAGGCATGGGAGAATTGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGAACTTCAGGAAAGGTTATCCAGGCATGGGAGAATTGAGAAA  200

seq1  AAGCACAGCTCTTGCTCTTCCCTGCTGCCTTGACACTGCTTTTGACACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGCTCTTGCTCTTCCCTGCTGCCTTGACACTGCTTTTGACACCG  250

seq1  CCTTCCAGCCTGCAGGAAAGAACTGAGGATTCTGTGTTGGGTCCTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCCTGCAGGAAAGAACTGAGGATTCTGTGTTGGGTCCTCCCTC  300

seq1  CCCCAGAGCTCTATGTCCTGTGTCCTGGTCTTTATGTACTGGAAGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCTCTATGTCCTGTGTCCTGGTCTTTATGTACTGGAAGTCCCA  350

seq1  GAGCAAGCAAGAAGGCTCATCCTTCCTGAAGTACAAAGTCCAGGAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCAAGAAGGCTCATCCTTCCTGAAGTACAAAGTCCAGGAGAAAT  400

seq1  CCCTGAACAGGCACCTGGAAGGAGAGTGAGGCACACAACACCCAGCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACAGGCACCTGGAAGGAGAGTGAGGCACACAACACCCAGCTCTC  450

seq1  CTGCTGCTGCTGATTGGAGTCTACACCACACTGACCTCCTGCACCATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCTGATTGGAGTCTACACCACACTGACCTCCTGCACCATGGC  500

seq1  AACCCCTTTCCTATCATTTCATAAGTGTGAGAAAGCACCCAGTAGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTTTCCTATCATTTCATAAGTGTGAGAAAGCACCCAGTAGCTTCT  550

seq1  CTTTACATGGGCGGGACACTTAAGATTTAGGATTTACAATTTCTTTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATGGGCGGGACACTTAAGATTTAGGATTTACAATTTCTTTCTAG  600

seq1  GTGAAATCCAGATACCATACAGCTAGAAGATTCATTTCAAATTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCCAGATACCATACAGCTAGAAGATTCATTTCAAATTCTCTCTC  650

seq1  TCTCCCCCTCCCCCTCCC  668
      ||||||||||||||||||
seq2  TCTCCCCCTCCCCCTCCC  668


seq1: chr15_6115431_6115728
seq2: B6Ng01-212K08.g_237_470

seq1  TTTTTTTCTTTTTTCTTTTTTTTAAAAATCTTTTTCAAACAACCATTTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTATGGCTATTTTTCTTTTT--TTTTCTTCTTCTTTCTTAATTTATTTTC  98
             | |||||||||||  ||||||| ||  |||||  ||||||   
seq2  -------TTTTTTTCTTTTTTCTTTTCTT-TTTATTCTT--TTTATT---  37

seq1  AATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCC-AAAGTCCCC  147
      |||||||||||||||||||||||||||  ||||||||||| |||||||||
seq2  AATTAGGTATTTTCTTCATTTACATTTTCAATGCTATCCCAAAAGTCCCC  87

seq1  CAAACCCTCCCCCCCACTCCCCTACCCACCCACTCCCACTTCTTGGCCCT  197
      || | || |||| |  |||||   ||| ||||||||||||||||||||||
seq2  CATAACC-CCCCTCTGCTCCC---CCCCCCCACTCCCACTTCTTGGCCCT  133

seq1  GGCGTTCCCCCGTACTGAGGCATATAAAGTTTGCAAGACCAAGGAGCCTC  247
      ||||| |||| ||||||||||||||||||||||||||||||| | |||||
seq2  GGCGTACCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAATGGGCCTC  183

seq1  TCTTCCCAATGATGGCCGACGAGGCCATCTTCTGATACATATGCAGCTAG  297
      |||| ||||||||||| ||| ||||||||||||||||||||| |||||||
seq2  TCTTTCCAATGATGGCTGACTAGGCCATCTTCTGATACATATACAGCTAG  233

seq1  A  298
      |
seq2  A  234


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