BAC Information

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BAC

Clone NameB6Ng01-213A09
Chromosome15 (Build37)
Map Location 31,143,276 - 31,296,575
singlet/doubletdoublet
Overlap geneDap, EG625796, 5730557B15Rik
Upstream geneCtnnd2, 9630009A06Rik
Downstream geneRopn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik, Sema5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213A09.bB6Ng01-213A09.g
ACCGA030668GA030669
length5481,152
definitionB6Ng01-213A09.b B6Ng01-213A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,296,022 - 31,296,575)(31,143,276 - 31,144,428)
sequence
tccgcgctggaaatgtggtgacatctgagatgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgggggcccttccactcagtgcccct
ctgactgttacctttccccaggcaccaggtaggcaatggtctctactcac
tttcaggggacattttcctacccccatccgcatttgtccgctctgcctct
cccgctgtctttgcctaacacgttggattatgatttggaagctacagttc
ctttcattacctaaaccgccctggctttttacgtgcttttcctagtggcc
cgcgcggcgaccagccagctttatgtgcggccaccgctcgggtcgaagcc
aatgagccttcacagccacgcttcaggcaggccgggtgctgcgcagctca
ttaggggcacactccagggtcagcacgtgggtaagtaaggaggcagtctc
cttttattacgccaagattcagagatagcaagaaagtttaaaaaaaaagt
tggagagctgtttccactgactagtaaatgggaaagtgaccgctgtgg
gaattcctatttagtaaagagtcagttgcccagaagggagaaacggtagt
tatatagatggcctttggcaaaaacaaaaaacaaaacaaaacaaaacaaa
acaccctttgtgtaacagttgccctagaaatcacttatgggggacaaagg
cctggagtcctgccattggtttacatgtctgctttgtcttaaaacttaga
gtcagacttctgtttaagcctgcttgttgacacgttaaccactcaaagag
tgtcttctcttgataatgggttgcctggctagttcagtcagtgaagcttg
agaatcatatgacctagaaattaacctatttcatcccccttcaaggctga
aagcagaaaggtaagagtgactgagaggtctcaccatcagcctttacagt
gtcctgttccatcctgaaagtctgcactcatcctcatgggcatgtattcc
cctggtagtctagggacagcagagtctcacaggcaagatcacacaggacc
cagcagttatctcttggaaaacagtccatcatcttgagtgataagaacca
tcttacatgaccagaactgagataaagactatccatagctcactgtgacc
aagactatgtaactacgcactccctcgctcataccaactcctcctacccc
atttctccctctatatgatcctaaaacaataccccaaagatggctgaaat
gcatgctttctaccttccccaaaatggttatttttactgaacccctttct
tatttcttttgtttgctttctttgaaagctactggattgggcatgttaaa
accagctaagactgttgttatatatacaaccacttggaagaaatttgagg
gagtgtttcaagttaaatagtacactcacagaatgatgaatagtgtacag
ttcctcttgagggagattatgtaaagtaagttgatatgagctgaaggagg
gagatggtggagatgccagtcactttgatgggcatgtgcttcatctgtct
gaatgagtacaattcacaggtatgctataaacaatggggattgttgggga
caatgctgtccatggtcttgctttgttataagggtccactatgaatgttc
atgtccctcctcatattttacaagccactgaacctttattattctgggat
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_31296022_31296575
seq2: B6Ng01-213A09.b_42_595 (reverse)

seq1  CCACAGCGGTCACTTTCCCATTTACTAGTCAGTGGAAACAGCTCTCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCGGTCACTTTCCCATTTACTAGTCAGTGGAAACAGCTCTCCAAC  50

seq1  TTTTTTTTTAAACTTTCTTACTATCTCTGAATCTTGGCGTAATAAACGGA  100
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  TTTTTTTTTAAACTTTCTTGCTATCTCTGAATCTTGGCGTAATAAAAGGA  100

seq1  GACTGCCTCCTTACTTCCCCGCGTGCTGACCCTGGAGTGTGCCCCTACTG  150
      |||||||||||||||| ||| |||||||||||||||||||||||||| ||
seq2  GACTGCCTCCTTACTTACCCACGTGCTGACCCTGGAGTGTGCCCCTAATG  150

seq1  AGCTGCGCAGCACCCGGCCTGCCTGAAGCGTGGCTGTGAAGGCTCATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGCAGCACCCGGCCTGCCTGAAGCGTGGCTGTGAAGGCTCATTGG  200

seq1  CTTCGACCCGAGCGGTGACCGCACATAAAGCTGGCTGGTCGCCGCGCGGG  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTCGACCCGAGCGGTGGCCGCACATAAAGCTGGCTGGTCGCCGCGCGGG  250

seq1  CCACTAGGAAAAGCACGTAAAAAGCCAGGGCGGTTTAGGTAATGAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGAAAAGCACGTAAAAAGCCAGGGCGGTTTAGGTAATGAAAGGA  300

seq1  ACTGTAGCTTCCAAATCCTAATCCAACGTGTTAGGCAAAGACAGCGGGAG  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTGTAGCTTCCAAATCATAATCCAACGTGTTAGGCAAAGACAGCGGGAG  350

seq1  AGGCAGAGCGGACAAATGCGGATGGGGGTAGGAAAATGTCCCCTGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCGGACAAATGCGGATGGGGGTAGGAAAATGTCCCCTGAAAGT  400

seq1  GAGTAGAGACCATTGCCTACCTGGTGCCTGGGGAAAGGTAACAGTCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGACCATTGCCTACCTGGTGCCTGGGGAAAGGTAACAGTCAGAG  450

seq1  GGGCACTGAGTGGAAGGGACACCACACACACACACACACACACACACACA  500
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  GGGCACTGAGTGGAAGGGCCCCCACACACACACACACACACACACACACA  500

seq1  CACACACACACACACACATCTCAGATGTCACCACATTTCCAGCGCGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATCTCAGATGTCACCACATTTCCAGCGCGGAGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554

seq1: chr15_31143276_31144428
seq2: B6Ng01-213A09.g_67_1218

seq1  GAATTCCTATTTAGTAAAGAGTCAGTTGCCCAGAAGGGAGAAACGGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTAGTAAAGAGTCAGTTGCCCAGAAGGGAGAAACGGTAGT  50

seq1  TATATAGATGGCCTTTGGCAAAAACAAAAAACAAAACAAAACAAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGATGGCCTTTGGCAAAAACAAAAAACAAAACAAAACAAAACAAA  100

seq1  ACACCCTTTGTGTAACAGTTGCCCTAGAAATCACTTATGGGGGACAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTTGTGTAACAGTTGCCCTAGAAATCACTTATGGGGGACAAAGG  150

seq1  CCTGGAGTCCTGCCATTGGTTTACATGTCTGCTTTGTCTTAAAACTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTCCTGCCATTGGTTTACATGTCTGCTTTGTCTTAAAACTTAGA  200

seq1  GTCAGACTTCTGTTTAAGCCTGCTTGTTGACACGTTAACCACTCAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACTTCTGTTTAAGCCTGCTTGTTGACACGTTAACCACTCAAAGAG  250

seq1  TGTCTTCTCTTGATAATGGGTTGCCTGGCTAGTTCAGTCAGTGAAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCTTGATAATGGGTTGCCTGGCTAGTTCAGTCAGTGAAGCTTG  300

seq1  AGAATCATATGACCTAGAAATTAACCTATTTCATCCCCCTTCAAGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATATGACCTAGAAATTAACCTATTTCATCCCCCTTCAAGGCTGA  350

seq1  AAGCAGAAAGGTAAGAGTGACTGAGAGGTCTCACCATCAGCCTTTACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAGGTAAGAGTGACTGAGAGGTCTCACCATCAGCCTTTACAGT  400

seq1  GTCCTGTTCCATCCTGAAAGTCTGCACTCATCCTCATGGGCATGTATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTCCATCCTGAAAGTCTGCACTCATCCTCATGGGCATGTATTCC  450

seq1  CCTGGTAGTCTAGGGACAGCAGAGTCTCACAGGCAAGATCACACAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGTCTAGGGACAGCAGAGTCTCACAGGCAAGATCACACAGGACC  500

seq1  CAGCAGTTATCTCTTGGAAAACAGTCCATCATCTTGAGTGATAAGAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTATCTCTTGGAAAACAGTCCATCATCTTGAGTGATAAGAACCA  550

seq1  TCTTACATGACCAGAACTGAGATAAAGACTATCCATAGCTCACTGTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATGACCAGAACTGAGATAAAGACTATCCATAGCTCACTGTGACC  600

seq1  AAGACTATGTAACTACGCACTCCCTCGCTCATACCAACTCCTCCTACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATGTAACTACGCACTCCCTCGCTCATACCAACTCCTCCTACCCC  650

seq1  ATTTCTCCCTCTATATGATCCTAAAACAATACCCCAAAGATGGCTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCCTCTATATGATCCTAAAACAATACCCCAAAGATGGCTGAAAT  700

seq1  GCATGCTTTCTACCTTCCCCAAAATGGTTATTTTTACTGAACCCCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTTCTACCTTCCCCAAAATGGTTATTTTTACTGAACCCCTTTCT  750

seq1  TATTTCTTTTGTTTGCTTTCTTTGAAAGCTACTGGATTGGGCATGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTTGTTTGCTTTCTTTGAAAGCTACTGGATTGGGCATGTTAAA  800

seq1  ACCAGCTAAGACTGTTGTTATATATACAACCACTTGGAAGAAATTTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTAAGACTGTTGTTATATATACAACCACTTGGAAGAAATTTGAGG  850

seq1  GAGTGTTTCAAGTTAAATAGTACACTCACAGAATGATGAATAGTGTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTCAAGTTAAATAGTACACTCACAGAATGATGAATAGTGTACAG  900

seq1  TTCCTCTTGAGGGAGA-TATGTAAAGTAAGTTGATATGAGCTGAAGGAGG  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCCTCTTGAGGGAGATTATGTAAAGTAAGTTGATATGAGCTGAAGGAGG  950

seq1  GAGAT-GTGGAGATGCCAGTCAACTTGATTGGCATGGTGCTTCATCTGTC  998
      ||||| ||||||||||||||||  ||||| ||||| ||||||||||||||
seq2  GAGATGGTGGAGATGCCAGTCACTTTGATGGGCAT-GTGCTTCATCTGTC  999

seq1  TGAATGAGTAC-ATTCACAAGGTATGCTATAAACAAT-GGGATTGTTGGG  1046
      ||||||||||| |||||| |||||||||||||||||| ||||||||||||
seq2  TGAATGAGTACAATTCAC-AGGTATGCTATAAACAATGGGGATTGTTGGG  1048

seq1  GACAATGCTGTCCCATGTCCTTGCTTTGTTATAAGGGT-CACTATG-ATG  1094
      ||||||||||| |||||  ||||||||||||||||||| ||||||| |||
seq2  GACAATGCTGT-CCATGGTCTTGCTTTGTTATAAGGGTCCACTATGAATG  1097

seq1  TTCCATGTTCCT-CTCATATTTTAACAAGCCACCAGAACTTTATTTTAAT  1143
      || ||||| ||| |||||||||| |||||||||   | |||||||   ||
seq2  TT-CATGTCCCTCCTCATATTTT-ACAAGCCACTGAACCTTTATT---AT  1142

seq1  TCTGTGATCT  1153
      |||| |||||
seq2  TCTGGGATCT  1152