BAC Information

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BAC

Clone NameB6Ng01-213A16
Chromosome15 (Build37)
Map Location 29,470,501 - 29,619,343
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213A16.bB6Ng01-213A16.g
ACCGA030681GA030682
length1,1271,177
definitionB6Ng01-213A16.b B6Ng01-213A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,470,501 - 29,471,645)(29,618,159 - 29,619,343)
sequence
gaattcagtaaattaaaatttctagtatgttaaagtcatgatcacatagg
caaagtatatactttttataaatagagtacatttctcatatgcatttatg
taaagtaaaaatagtgaaataatttactcagttcttacttgaatcacaca
attctctaagcactaaggcaatccataaagtttttgcctcaaaacataca
caacaaggcccctggaatgtacatagcagacacgtggagcttggtctcca
ttgggtctctcaacaattggaatgaggcagtccctaaagctgtaggctga
ctatggtatccattcctcatcaaagctgtcttctctgcctgagtggtaga
ggatgtgcctagtgtgacagagacgtgaggcagccaagagggaggatgtg
agatggactctgcgagagggaactggagaaggagcagcatttgggatgtg
aatgaatgaatgaaaaaataaatttaaataaataaatgaaaatacacaaa
accttgcagtaattgtatagactactcctagcataactcatataagagtt
ttgaacaaaggctgattatatatatatttaatcagtctacagtagttttc
ttaaccaatcatatataaaattgtagtctcagttagatcacatcattaat
tttcctttgaactctatttatttatttatttatttatttatttatttatt
tatttacatcccaaatactgcttccctcctcgtatcgcctccacagattt
tttttttattgctctccttcacctctgagagggagtgcccactcccctgt
atcctagtaccctggtaggtcaaatctctgtaggattaagagcatcctcc
aacccttctcacaacttttacataagagttcccaaccttcgtccaacatt
tggctgtgggtttctgcatctgtctcagtcatctgctggatagacagtta
tgctaggcttctgtttgcaagcataggtggtatcataatagtgcaggatt
gagtttctcatagatggtctcagtggacagttctagttgggcattcctca
tctcgttcatctttgtccctgcattctccaatctaggagctcacagaaaa
atggaatagtcctacctgagactcagc

gaattcagtcttccactagcctttggatgaagatgtaaaactctcagcac
tgcctgctccatgcctgcctggatactgccatgctcccaccttgaagata
atggactgaacctctgaacctgtaagccagccacaattaaatgttgtttt
ttataagagttgccttggtcatggtatctgttcacagcagtaaaacccca
actaaggcaaatgtcatgtccatattgaaacaagatgtgaggacagagaa
attagaatttggatgacaaatgggtaacctttacacaggcacaaagaaat
attatgcttacaaatacttggtaagcaggaggtaaatcttagatccagtt
aactcacagagacacaggagtttgagacaacacagagaggtgtatggtaa
tttgccatattcaccctacatttcattcttatagtattcaactacagaag
tccctggtacaagatcagaaaaacatgccctttcagtgggcaggcacatt
tttatgaagcagtgtaggcaaacaaccagatattaatctaagggaaaagg
acccagtgacatttaagtattatattcgttaatatcacatgcacagtaat
ttcttaaagaaaaaaaataagcattgggttctgtgtgagaataaggagtt
cagaatattaacaaatcatcaagacagtggtaagtgatcataaaagaagg
aaaacatcactgtgttctcagatgactgaacctactctttgtgggggttt
taacgtttgcacgtgttgctatttgactctgaaatgtccccaaaccccag
tatgctgttcggagtgcttgctctcaagctgctattgctattgaggacta
tgtgcaacaattttatcactgttgttttgcttttgaagttcataccagat
cttcagcccatgtagttcttgtctgccattaagtgaatagtgatgagatg
acactacatctctcttggccaccttcccttgagggaaattatgaccctac
atgttggtgtatagggataaatagaagacagagtgacagatgttcaaagg
cacattatttgtggagagagaatgacataatgaactaacaataaggtact
tgaatatgcctggacctcatgtaaacagatagggctgaatgctttgtaag
ctcagataggtctttcaagaccagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29470501_29471645
seq2: B6Ng01-213A16.b_49_1175

seq1  GAATTCAGTAAATTAAAATTTCTAGTATGTTAAAGTCATGATCACATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAATTAAAATTTCTAGTATGTTAAAGTCATGATCACATAGG  50

seq1  CAAAGTATATACTTTTTATAAATAGAGTACATTTCTCATATGCATTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATATACTTTTTATAAATAGAGTACATTTCTCATATGCATTTATG  100

seq1  TAAAGTAAAAATAGTGAAATAATTTACTCAGTTCTTACTTGAATCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAAATAGTGAAATAATTTACTCAGTTCTTACTTGAATCACACA  150

seq1  ATTCTCTAAGCACTAAGGCAATCCATAAAGTTTTTGCCTCAAAACATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAAGCACTAAGGCAATCCATAAAGTTTTTGCCTCAAAACATACA  200

seq1  CAACAAGGCCCCTGGAATGTACATAGCAGACACGTGGAGCTTGGTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCCCCTGGAATGTACATAGCAGACACGTGGAGCTTGGTCTCCA  250

seq1  TTGGGTCTCTCAACAATTGGAATGAGGCAGTCCCTAAAGCTGTAGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTCTCAACAATTGGAATGAGGCAGTCCCTAAAGCTGTAGGCTGA  300

seq1  CTATGGTATCCATTCCTCATCAAAGCTGTCTTCTCTGCCTGAGTGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTATCCATTCCTCATCAAAGCTGTCTTCTCTGCCTGAGTGGTAGA  350

seq1  GGATGTGCCTAGTGTGACAGAGACGTGAGGCAGCCAAGAGGGAGGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCCTAGTGTGACAGAGACGTGAGGCAGCCAAGAGGGAGGATGTG  400

seq1  AGATGGACTCTGCGAGAGGGAACTGGAGAAGGAGCAGCATTTGGGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACTCTGCGAGAGGGAACTGGAGAAGGAGCAGCATTTGGGATGTG  450

seq1  AATGAATGAATGAAAAAATAAATTTAAATAAATAAATGAAAATACACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATGAAAAAATAAATTTAAATAAATAAATGAAAATACACAAA  500

seq1  ACCTTGCAGTAATTGTATAGACTACTCCTAGCATAACTCATATAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCAGTAATTGTATAGACTACTCCTAGCATAACTCATATAAGAGTT  550

seq1  TTGAACAAAGGCTGATTATATATATATTTAATCAGTCTACAGTAGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAAGGCTGATTATATATATATTTAATCAGTCTACAGTAGTTTTC  600

seq1  TTAACCAATCATATATAAAATTGTAGTCTCAGTTAGATCACATCATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAATCATATATAAAATTGTAGTCTCAGTTAGATCACATCATTAAT  650

seq1  TTTCCTTTGAACTCTATTTATTTATTTATTTATTTATTTATTTATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGAACTCTATTTATTTATTTATTTATTTATTTATTTATTTATT  700

seq1  TATTTACATCCCAAATACTGCTTCCCTCCTCGTATCGCCTCCACAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATCCCAAATACTGCTTCCCTCCTCGTATCGCCTCCACAGATTT  750

seq1  TTTTTTTATTGCTCTCCTTCACCTCTGAGAGGGAGTGCCCACTCCCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTGCTCTCCTTCACCTCTGAGAGGGAGTGCCCACTCCCCTGT  800

seq1  ATCCTAGTACCCTGGTAGGTCAAATCTCTGTAGGATTAAGAGCATCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTACCCTGGTAGGTCAAATCTCTGTAGGATTAAGAGCATCCTCC  850

seq1  AACCCTTCTCACAACTTTTACATAAGAGTTCCCAACCTTCGTCCAACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCTCACAACTTTTACATAAGAGTTCCCAACCTTCGTCCAACATT  900

seq1  TGGCTGTGGGTTTCTGCATCTGTCTCAGTCATCTGCTGGATAGACAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGGTTTCTGCATCTGTCTCAGTCATCTGCTGGATAGACAGTTA  950

seq1  TGCTAGGCTTCTGTTTGCAAGCATA-GTGGTATCATTAATAGTGCCAAGG  999
      ||||||||||||||||||||||||| ||||||||| |||||||||  |||
seq2  TGCTAGGCTTCTGTTTGCAAGCATAGGTGGTATCA-TAATAGTGC--AGG  997

seq1  ATTGAAGTTTCCTCATAGAATGGGTCTCAAGTTGGACCAGTTCTTAGTTG  1049
      |||| ||||| ||||||||   |||||||   |||| |||||| ||||||
seq2  ATTG-AGTTT-CTCATAGA--TGGTCTCA--GTGGA-CAGTTC-TAGTTG  1039

seq1  GCCATTCCCTCAATCTCGGTTTCATCTTTGTCCCTGCATTTCTTCAATCT  1099
      | |||| |||| ||||||  |||||||||||||||||| |||| ||||||
seq2  GGCATT-CCTC-ATCTCG--TTCATCTTTGTCCCTGCA-TTCTCCAATCT  1084

seq1  AGGAGCTTCACAGAAAATTGGAAATAGTTCTACCTGAAGACTCAGC  1145
      |||||| |||||||||| ||| |||||| ||||||| |||||||||
seq2  AGGAGC-TCACAGAAAAATGG-AATAGTCCTACCTG-AGACTCAGC  1127


seq1: chr15_29618159_29619343
seq2: B6Ng01-213A16.g_67_1243 (reverse)

seq1  AGGCTGGT-TTG--AGAACTA-CTGAGCTTTCCAAGGCATCAGCCCTA-C  45
      |||||||| |||  ||| ||| |||||||| | |||   ||||||||| |
seq2  AGGCTGGTCTTGAAAGACCTATCTGAGCTTACAAAGCATTCAGCCCTATC  50

seq1  TGTTTTTCCAATGAATGTCAGGCATAATCACAGTACTTTAAATTCCTAGT  95
      |||||     ||||    |||||||| ||| ||||| ||  |||  ||||
seq2  TGTTT---ACATGAGGTCCAGGCATATTCA-AGTACCTT--ATTGTTAGT  94

seq1  TCATTATGTTCCATCTCTCTCCACAAAT-ATGTGCCTTTGACATTCTTTG  144
      |||||||| ||  ||||||||||||||| ||||||||||||   ||  ||
seq2  TCATTATG-TCATTCTCTCTCCACAAATAATGTGCCTTTGAACATC--TG  141

seq1  TCACTCTGTTCTTCTATTTATCCCTATTACACCAACATGTAGGGTCATAA  194
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TCACTCTG-TCTTCTATTTATCCCTA-TACACCAACATGTAGGGTCATAA  189

seq1  TTTCCCTCAAGGGAAGGTGGCCAAGAGAGATGTAGTTGTCATTCTCATTC  244
      ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
seq2  TTTCCCTCAAGGGAAGGTGGCCAAGAGAGATGTAG-TGTCA-TCTCA-TC  236

seq1  ACTATTCACTTAATGGCAGACAAGAACTACATGGGCTGAAGATCTGGTAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCACTTAATGGCAGACAAGAACTACATGGGCTGAAGATCTGGTAT  286

seq1  GAACTTCAAAAGCAAAACAACAGTGATAAAATTGTTGCACATAGTCCTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAAAAGCAAAACAACAGTGATAAAATTGTTGCACATAGTCCTCA  336

seq1  ATAGCAATAGCAGCTTGAGAGCAAGCACTCCGAACAGCATACTGGGGTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATAGCAGCTTGAGAGCAAGCACTCCGAACAGCATACTGGGGTTT  386

seq1  GGGGACATTTCAGAGTCAAATAGCAACACGTGCAAACGTTAAAACCCCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATTTCAGAGTCAAATAGCAACACGTGCAAACGTTAAAACCCCCA  436

seq1  CAAAGAGTAGGTTCAGTCATCTGAGAACACAGTGATGTTTTCCTTCTTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGTAGGTTCAGTCATCTGAGAACACAGTGATGTTTTCCTTCTTTT  486

seq1  ATGATCACTTACCACTGTCTTGATGATTTGTTAATATTCTGAACTCCTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACTTACCACTGTCTTGATGATTTGTTAATATTCTGAACTCCTTA  536

seq1  TTCTCACACAGAACCCAATGCTTATTTTTTTTCTTTAAGAAATTACTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACACAGAACCCAATGCTTATTTTTTTTCTTTAAGAAATTACTGTG  586

seq1  CATGTGATATTAACGAATATAATACTTAAATGTCACTGGGTCCTTTTCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATATTAACGAATATAATACTTAAATGTCACTGGGTCCTTTTCCC  636

seq1  TTAGATTAATATCTGGTTGTTTGCCTACACTGCTTCATAAAAATGTGCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTAATATCTGGTTGTTTGCCTACACTGCTTCATAAAAATGTGCCT  686

seq1  GCCCACTGAAAGGGCATGTTTTTCTGATCTTGTACCAGGGACTTCTGTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGAAAGGGCATGTTTTTCTGATCTTGTACCAGGGACTTCTGTAG  736

seq1  TTGAATACTATAAGAATGAAATGTAGGGTGAATATGGCAAATTACCATAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACTATAAGAATGAAATGTAGGGTGAATATGGCAAATTACCATAC  786

seq1  ACCTCTCTGTGTTGTCTCAAACTCCTGTGTCTCTGTGAGTTAACTGGATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTGTGTTGTCTCAAACTCCTGTGTCTCTGTGAGTTAACTGGATC  836

seq1  TAAGATTTACCTCCTGCTTACCAAGTATTTGTAAGCATAATATTTCTTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTACCTCCTGCTTACCAAGTATTTGTAAGCATAATATTTCTTTG  886

seq1  TGCCTGTGTAAAGGTTACCCATTTGTCATCCAAATTCTAATTTCTCTGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGTAAAGGTTACCCATTTGTCATCCAAATTCTAATTTCTCTGTC  936

seq1  CTCACATCTTGTTTCAATATGGACATGACATTTGCCTTAGTTGGGGTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTTGTTTCAATATGGACATGACATTTGCCTTAGTTGGGGTTTT  986

seq1  ACTGCTGTGAACAGATACCATGACCAAGGCAACTCTTATAAAAAACAACA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTGAACAGATACCATGACCAAGGCAACTCTTATAAAAAACAACA  1036

seq1  TTTAATTGTGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCTTCAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGTGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCTTCAA  1086

seq1  GGTGGGAGCATGGCAGTATCCAGGCAGGCATGGAGCAGGCAGTGCTGAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGCATGGCAGTATCCAGGCAGGCATGGAGCAGGCAGTGCTGAGA  1136

seq1  GTTTTACATCTTCATCCAAAGGCTAGTGGAAGACTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACATCTTCATCCAAAGGCTAGTGGAAGACTGAATTC  1177


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