BAC Information

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BAC

Clone NameB6Ng01-213D05
Chromosome15 (Build37)
Map Location 89,660,849 - 89,662,005
singlet/doubletsinglet
Overlap geneSyt10
Upstream genePim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575
Downstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213D05.bB6Ng01-213D05.g
ACCGA030800GA030801
length1,2051,161
definitionB6Ng01-213D05.b B6Ng01-213D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacatgccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtttctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagattttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcggggatttgaagtttttatcata
cagatctttcacctccttagttagcgttacgccaagatattttatattat
ttgtgactattgagaagggttgttgtttccttaattctttctcagcctgt
ttattctttgtatagagaaggtccaatgacttgtttgagtttatttttat
attcagctacttcacgagctgctatcagtttaggagttcctctggtagat
ttacgctcacttatattactatctatccatcggcaaagtgatacttgaac
tcccttgcatggtacctgatcccttgtgctcaattgcactgcgtctaaat
accta
gaattcaaccccaccaatacctcaatggggaagtaagttcctattgttta
agccattcatatatttttatggtagtcccagcacatttattaattaatta
ataaatttattaatactggataattccaaattcctttaaaccctgttgtg
aattcagtatgtcaccttccttgaaagtaaccactgatactaagtggatg
ctttgtctaggcctggcacacagagacaaaaatatatcgcgtaaagtctt
aaatatttacagtcacataatattattttgatataaattgttgacagcat
aattcttccttcaatttgcccttttacccagaaattagttggaatttcat
gctgatgtaattttccataataattcatcagaacagatacaaaattaggc
tcagtgcttgggagtgtagcgcatgagcatctctgtattttctccttgta
tggatacttgtgactgatttttttttttaaagcaaaagtctcaaaataga
attgctcagtcacttatatacatatttcattttactagatattttcgtgg
atccaaaatgagtcctctacttgtgaaagagacaccataggggcttataa
atctctacaattttagagaaatatcatctcataattttcactaatcttcc
aaagctttgttttctcctgactggaatgggaggtcatgctgaaatgaaag
taaaatttttttactattacctagttatgaaagtaagatataggtttggc
ctgctgcagtggacattagtattccccttaacgttctttatgcttactgg
ggcaacgactgagtgcttcctatttgtaccctattgatatggagggcttt
cttcaatgttttatagagttcatttcatattttttacactgatgtgttac
tcattatcaccataactttgaggaaaagagagaacgtgtgagattaatgt
gcttccttgtcttttaactagatttaaaaaatgaataaagatgacgtgtt
ggctattgcttctaaaatactcctaagtttatgtccttgaacgttatttg
caaaagcagcaggcgtctaagtgaagataataagaagttctgtcgtcaca
ctggctcttggtttcatacttgaattgatgtctattccaagagtggatta
gattactgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89660849_89662005
seq2: B6Ng01-213D05.g_66_1226

seq1  GAATTCAACCCCACCAATACCTCAATGGGGAAGTAAGTTCCTATTGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCCACCAATACCTCAATGGGGAAGTAAGTTCCTATTGTTTA  50

seq1  AGCCATTCATATATTTTTATGGTAGTCCCAGCACATTTATTAATTAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCATATATTTTTATGGTAGTCCCAGCACATTTATTAATTAATTA  100

seq1  ATAAATTTATTAATACTGGATAATTCCAAATTCCTTTAAACCCTGTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTATTAATACTGGATAATTCCAAATTCCTTTAAACCCTGTTGTG  150

seq1  AATTCAGTATGTCACCTTCCTTGAAAGTAACCACTGATACTAAGTGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTATGTCACCTTCCTTGAAAGTAACCACTGATACTAAGTGGATG  200

seq1  CTTTGTCTAGGCCTGGCACACAGAGACAAAAATATATCGCGTAAAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTAGGCCTGGCACACAGAGACAAAAATATATCGCGTAAAGTCTT  250

seq1  AAATATTTACAGTCACATAATATTATTTTGATATAAATTGTTGACAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTACAGTCACATAATATTATTTTGATATAAATTGTTGACAGCAT  300

seq1  AATTCTTCCTTCAATTTGCCCTTTTACCCAGAAATTAGTTGGAATTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCCTTCAATTTGCCCTTTTACCCAGAAATTAGTTGGAATTTCAT  350

seq1  GCTGATGTAATTTTCCATAATAATTCATCAGAACAGATACAAAATTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTAATTTTCCATAATAATTCATCAGAACAGATACAAAATTAGGC  400

seq1  TCAGTGCTTGGGAGTGTAGCGCATGAGCATCTCTGTATTTTCTCCTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTGGGAGTGTAGCGCATGAGCATCTCTGTATTTTCTCCTTGTA  450

seq1  TGGATACTTGTGACTGATTTTTTTTTTTAAAGCAAAAGTCTCAAAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTTGTGACTGATTTTTTTTTTTAAAGCAAAAGTCTCAAAATAGA  500

seq1  ATTGCTCAGTCACTTATATACATATTTCATTTTACTAGATATTTTCGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCAGTCACTTATATACATATTTCATTTTACTAGATATTTTCGTGG  550

seq1  ATCCAAAATGAGTCCTCTACTTGTGAAAGAGACACCATAGGGGCTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAATGAGTCCTCTACTTGTGAAAGAGACACCATAGGGGCTTATAA  600

seq1  ATCTCTACAATTTTAGAGAAATATCATCTCATAATTTTCACTAATCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTACAATTTTAGAGAAATATCATCTCATAATTTTCACTAATCTTCC  650

seq1  AAAGCTTTGTTTTCTCCTGACTGGAATGGGAGGTCATGCTGAAATGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGTTTTCTCCTGACTGGAATGGGAGGTCATGCTGAAATGAAAG  700

seq1  TAAAATTTTTTTACTATTACCTAGTTATGAAAGTAAGATATAGGTTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTTTACTATTACCTAGTTATGAAAGTAAGATATAGGTTTGGC  750

seq1  CTGCTGCAGTGGACATTAGTATTCCCCTTAACGTTCTTTATGCTTACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAGTGGACATTAGTATTCCCCTTAACGTTCTTTATGCTTACTGG  800

seq1  GGCAACGACTGAGTGCTTCCTATTTGTACCCTATTGATATGGAGGGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGACTGAGTGCTTCCTATTTGTACCCTATTGATATGGAGGGCTTT  850

seq1  CTTCAATGTTTTATAGAGTTCATTTCATA-TTTTTACACTGATGTGTTAC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTCAATGTTTTATAGAGTTCATTTCATATTTTTTACACTGATGTGTTAC  900

seq1  TCATTATCACCATAAC-TTGAGGAAAAGAGAGAACGTGTGAGATTAATGT  948
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATTATCACCATAACTTTGAGGAAAAGAGAGAACGTGTGAGATTAATGT  950

seq1  GCTTCC-TGTCTATTAACTAGATTTAAAAAAATGAATAAAGATGACGTGT  997
      |||||| ||||| |||||||||||| ||||||||||||||||||||||||
seq2  GCTTCCTTGTCTTTTAACTAGATTT-AAAAAATGAATAAAGATGACGTGT  999

seq1  TGGCTA-TGCTTCTAAAATACTCCCTAAGGTTTATGTCTTGGAAACGTTA  1046
      |||||| ||||||||||||||| ||||| ||||||||| | | |||||||
seq2  TGGCTATTGCTTCTAAAATACT-CCTAA-GTTTATGTCCTTG-AACGTTA  1046

seq1  -TTGCAAAAGCAGCAGGGCGTCAAAGTGAAGATAAATAAGAAGTTCTGTC  1095
       |||||||||||||| |||||| |||||||||| ||||||||||||||||
seq2  TTTGCAAAAGCAGCA-GGCGTCTAAGTGAAGAT-AATAAGAAGTTCTGTC  1094

seq1  GTCACACGGGCTC-TGGTTTCATAC-TGGATTGATG-CTATCCCAAGAGT  1142
      ||||||| ||||| ||||||||||| || ||||||| |||| ||||||||
seq2  GTCACACTGGCTCTTGGTTTCATACTTGAATTGATGTCTATTCCAAGAGT  1144

seq1  -GATTAG-TTACTGAAG  1157
       |||||| |||||||||
seq2  GGATTAGATTACTGAAG  1161