BAC Information

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BAC

Clone NameB6Ng01-213F15
Chromosome15 (Build37)
Map Location 89,642,997 - 89,644,196
singlet/doubletsinglet
Overlap geneSyt10
Upstream geneAlg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575
Downstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213F15.bB6Ng01-213F15.g
ACCGA030904GA030905
length1,2021,171
definitionB6Ng01-213F15.b B6Ng01-213F15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttgtttaaagtgattttatttcacaggtcaaacctgaactat
atgctgatgcatcgtggtttgatctgaaacagcccatgactttagaagct
tctatggaatgtgcatggttacagtatatgggtgctaaaggatcaaaaaa
taattctccatattagaattatttttttcatgatatgtacttttttcaat
tacaaaatcatacagtattgaaactttggaaagcagcacaaacagaatag
aaataaagaaatcaacaatgctgccaattatgtaaatgttttggtttcct
gtttctgctctgaatgcattaaaataattatgattacactgaatttttat
tttgacactgattttgctccatgatttgtctcaatgcatgacctttattg
ttttgaattttttaattatcagtgtgtttgtgaatgtgtctgcatgtgtg
tgtgtttctgtgtgtgtacccacacatgcatgcaaagtatgtacatgtac
catgataggtacttacaaaggtcagagaacaattccgtggagttggttct
ttcctaccctgacatggggcccttgaatctaattcatgttcccaggcttg
tactgcaagtgtttttacatgctgaacagtatcattggccaaaatgtaca
gtatctaaatatgtaatccatttaattaactattttcttcttacacactt
agatgaagcataaattttgttttttaaaaagggaattattttaattcact
tatataaggctgtctgtcctgccatacaattacagaagaggaattaacgt
ctcgctctcggatttgattactaacttgttttgattcattaattttaaag
tgggagcattttactttttaccttcgggttgtgttgatacaactatcagt
ttgtctttacattttactgaaattgatgttgaatagagacaacagtttat
tttttaaagaaaaaagaacattttataaattcaaaataactccttctctg
aagccggtgtttgaagtaattgttatggtaacagatggtgtgagaacctg
cagagttgcaacaattattgccctttacagtcgctggggttcacctgtac
cagcatattccttaagaaaccatggtcaaggcttggcagaattgctctca
ctgcttaggacctgactgttcctttcagaggtctgatccattgctgcaac
ca
gaattctcacctgagttaataccgaatggcagagaagcacttgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaacaggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacctaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
agaaactcacacaatatgtattcactgataagtggatattagccccaaac
ctaggatacccaagatataagatataatttgctaaacacatgaaactcaa
ggagaatgaagactgaagtgtggacactatgcccctccttagatttggga
acaaaacacccatggaaggagttacagagacggagtttggagctgagatg
aaaggatggaccatgtagagactgccatagccagggatccaccccataat
cagcatccaaacactgacaccattgcatacactagcaagattttattgaa
agggacgcagatgtagctgttctcttgtgagactattgccggggcccagc
aaacacagaagtggatgctcacagtcagctaatggatggatcattagggc
tcccattggaggagctagagaagtagtctaggagctaagggatctgcaac
ccttataggtggaacaacatttatgaggctacccagtccctggagttctt
tgactctcagcttgcatataatatcaaagagatggtcttagttcggccat
actttggaaagagaaggcctattgtacttgcacttttatgctccatttac
aggtaattccaaggtccaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89642997_89644196
seq2: B6Ng01-213F15.b_49_1250 (reverse)

seq1  TGGTTGCAGGGAATTGAACTCAGGACCTCTGAAA-GAGCAGTCAGTGCTC  49
      |||||||| | ||| ||  ||| ||||||||||| || ||||||  | ||
seq2  TGGTTGCA-GCAATGGA--TCA-GACCTCTGAAAGGAACAGTCA--GGTC  44

seq1  TTAACCACT--GAGCCA-TCTTCCCAGCTTTCCCCTTTGTTTCTTAAAGA  96
       ||| || |  |||| | ||| || ||| ||  || | ||||||||| ||
seq2  CTAAGCAGTGAGAGCAATTCTGCCAAGCCTTGACCATGGTTTCTTAAGGA  94

seq1  ATATGCTGTAACA-GTGAACCCCAGCGACTG-AAAAGGCAATAA-TGTTG  143
      ||||||||  ||| ||||||||||||||||| ||| |||||||| |||||
seq2  ATATGCTGGTACAGGTGAACCCCAGCGACTGTAAAGGGCAATAATTGTTG  144

seq1  CAACTCTGCA-GTTCTCACACAATCTGTAACAATAACAATTACTTCAAAC  192
      |||||||||| |||||||||| |||||| || ||||||||||||||||||
seq2  CAACTCTGCAGGTTCTCACACCATCTGTTACCATAACAATTACTTCAAAC  194

seq1  ACCGGCCTCAGAGAAGGAGTTATTTTGAATTTATAAAATGTTCTTTTTTC  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCTTCAGAGAAGGAGTTATTTTGAATTTATAAAATGTTCTTTTTTC  244

seq1  TTTTAAAAATAAACTGTTGTCTCTATTCAACATCAATTTCAGTAAAATGT  292
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAATAAACTGTTGTCTCTATTCAACATCAATTTCAGTAAAATGT  294

seq1  TAAGACAAACTGATAAGTGTATCAACACAACCCGAAGGTAAAAAGTAAAA  342
       ||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  AAAGACAAACTGATAGTTGTATCAACACAACCCGAAGGTAAAAAGTAAAA  344

seq1  TGCTCCCACTTTAAAATTAATGAATCAAAACAAGTTAGTAATCAAATCCG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCACTTTAAAATTAATGAATCAAAACAAGTTAGTAATCAAATCCG  394

seq1  AGAGCGAGACGTTAATTCCTCTTCTGTAATTGTATGGCAGGACAGACAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGAGACGTTAATTCCTCTTCTGTAATTGTATGGCAGGACAGACAGC  444

seq1  CTTATATAAGTGAATTAAAATAATTCCCTTTTTAAAAAACAAAATTTATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAAGTGAATTAAAATAATTCCCTTTTTAAAAAACAAAATTTATG  494

seq1  CTTCATCTAAGTGTGTAAGAAGAAAATAGTTAATTAAATGGATTACATAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTAAGTGTGTAAGAAGAAAATAGTTAATTAAATGGATTACATAT  544

seq1  TTAGATACTGTACATTTTGGCCAATGATACTGTTCAGCATGTAAAAACAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATACTGTACATTTTGGCCAATGATACTGTTCAGCATGTAAAAACAC  594

seq1  TTGCAGTACAAGCCTGGGAACATGAATTAGATTCAAGGGCCCCATGTCAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTACAAGCCTGGGAACATGAATTAGATTCAAGGGCCCCATGTCAG  644

seq1  GGTAGGAAAGAACCAACTCCACGGAATTGTTCTCTGACCTTTGTAAGTAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAAAGAACCAACTCCACGGAATTGTTCTCTGACCTTTGTAAGTAC  694

seq1  CTATCATGGTACATGTACATACTTTGCATGCATGTGTGGGTACACACACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGGTACATGTACATACTTTGCATGCATGTGTGGGTACACACACA  744

seq1  GAAACACACACACATGCAGACACATTCACAAACACACTGATAATTAAAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACACACACATGCAGACACATTCACAAACACACTGATAATTAAAAA  794

seq1  ATTCAAAACAATAAAGGTCATGCATTGAGACAAATCATGGAGCAAAATCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAACAATAAAGGTCATGCATTGAGACAAATCATGGAGCAAAATCA  844

seq1  GTGTCAAAATAAAAATTCAGTGTAATCATAATTATTTTAATGCATTCAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAAATAAAAATTCAGTGTAATCATAATTATTTTAATGCATTCAGA  894

seq1  GCAGAAACAGGAAACCAAAACATTTACATAATTGGCAGCATTGTTGATTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACAGGAAACCAAAACATTTACATAATTGGCAGCATTGTTGATTT  944

seq1  CTTTATTTCTATTCTGTTTGTGCTGCTTTCCAAAGTTTCAATACTGTATG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTATTCTGTTTGTGCTGCTTTCCAAAGTTTCAATACTGTATG  994

seq1  ATTTTGTAATTGAAAAAAGTACATATCATGAAAAAAATAATTCTAATATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAATTGAAAAAAGTACATATCATGAAAAAAATAATTCTAATATG  1044

seq1  GAGAATTATTTTTTGATCCTTTAGCACCCATATACTGTAACCATGCACAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTATTTTTTGATCCTTTAGCACCCATATACTGTAACCATGCACAT  1094

seq1  TCCATAGAAGCTTCTAAAGTCATGGGCTGTTTCAGATCAAACCACGATGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAAGCTTCTAAAGTCATGGGCTGTTTCAGATCAAACCACGATGC  1144

seq1  ATCAGCATATAGTTCAGGTTTGACCTGTGAAATAAAATCACTTTAAACAA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATATAGTTCAGGTTTGACCTGTGAAATAAAATCACTTTAAACAA  1194

seq1  AGGAATTC  1200
      ||||||||
seq2  AGGAATTC  1202