BAC Information

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BAC

Clone NameB6Ng01-214C15
Chromosome15 (Build37)
Map Location 21,183,512 - 21,306,323
singlet/doubletdoublet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214C15.bB6Ng01-214C15.g
ACCGA031487GA031488
length1,0661,117
definitionB6Ng01-214C15.b B6Ng01-214C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,305,256 - 21,306,323)(21,183,512 - 21,184,631)
sequence
gaattcctaaatttaggtggaaatatgagtcttttttaacatgatctcaa
tatcacatgtctttttttgcgagttttttttcttttttgaaatgaagata
tttctagtattaacagtaacaagtgtttatatagtgacatcgtcttctat
gtctttgcatttcatatctttaccccaaataatttccagaaaaggattcc
aggtgcttgtcatgtgtggtttaaagatctcatcaggttaatagtttgcc
atttgcctctgagtctgtttgttcacctggatggattagagtgatccatc
agtttctgttttcctgacgctagtttcttcaacactaatgttagcacatg
cctattgctattcttagacacattttacagtgaataacaaacataaatgg
ctttggaaactagagctgacttctatgtggatgatctagtcaaagaaact
gaagcttaatcatctcctacggccatgagggctttatgtaggtgcagcca
ctctccagtgatcacttacgctaaagcagtagacaattgggcctaggtag
tctcctgtctgcttttgtatacaaaacataaatagcatacagcaaatgag
agaaaacagccccacagctggaaggcaactttaaagaaaaatgatgttca
tagctatcctgccagtagctggcaaagcactttttataaaacatatttaa
tgtttacagccactcggaggctggggaaggagtaatactttgaaaataca
tttaatgtttttaccacactgtggccgagaagcagctcctgctaaaatat
atttaatgcttagagtcgtttggcagtttagggaaaagaaacttcttgtt
aatttttaacatttattgctgatcagtgactgtgagaatgactaccactg
tggcatgctgtatgtttagggacacatttgtgctgccagtaaaacaatcc
gtacatttctctcaaggctacacagaaactgtcatagcattactcctttc
attgcgccacttataagaagcaggatttcagacccaggaataaatgttcc
tttaacaccacagtca
gaattctcctctttatttttcattgtttttctaaggaacaaagtatcatt
tacacccagaacatattcttcattgtgtactttacacttatattaaagga
ttgaaactcaatataagaaaatatattttaaatatattttggaaacactt
aaataaatataggcactcttgtatacacttgagtgtattgaactagaaag
tattgacttgtctttcagttattggatataaataactactcagattaata
cagcctcactataattctgttgatagttcaattcattgattatatattgg
agctgcatttgccaagataaacaatgatttagcagtaaggatctatggaa
caaaatttcttattgtttagcattgttgaattttggaatgatataagcag
tttcaaaatatttctgcatttttataataggcttagtcattgatcacaaa
ggattcaggcttgtaagtcaagattcttttttcaagtgattacaatgtga
actctgaaatgatactctcccaggatatggtaacaatgaaaatacaaatg
tcttttccattgaccattaattcaaagcactaaaatgatggcctgtattt
atggcaggacctactttgtaattatgatacaaatacctttaaagccaacc
ttcaaaaactggtgtgatagtttttaaaaaccaatataatatataagagg
aaaaatgtatacctttaggcttaaaatcaatcacaaagcagcaaattatt
aattatagcattctgccactatacagctaaattctctttgattaagtttt
aagcatcaagctaggcagcttcaaacatatctttcttatccatgctatga
ctatgatcagacagttcctcaaacaatcgagattgtttcacagctctcta
ctaataaagatgtgaatgcctgcatctacagtactctattgcaccagaga
cagtatatatatataaactgatataattcaaatgagttgaatgtttgtaa
accatttatttattaaagagccccagcaattgcttttttatgcatttaac
atttcctttaaaacacatttcaggagatccgcccatcatcccgattcctt
cccctcccaatactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21305256_21306323
seq2: B6Ng01-214C15.b_40_1105 (reverse)

seq1  TGACTGT-GTGTTAAAGGAACATTTTATTCCTGGGTCTGAAAT-CTGCTT  48
      ||||||| |||||||||||||| |||||||||||||||||||| |||| |
seq2  TGACTGTGGTGTTAAAGGAACA-TTTATTCCTGGGTCTGAAATCCTGC-T  48

seq1  TCTTATTAGTGGCGCAATTGAAAGG-GTAATGCTATTGACAGTTTCTGTG  97
      |||||| |||||||||| ||||||| ||||||||| ||||||||||||||
seq2  TCTTATAAGTGGCGCAA-TGAAAGGAGTAATGCTA-TGACAGTTTCTGTG  96

seq1  TAGCCTTGAGAGAAATGTACGGATTGTTTTACTGGCAGCACAAATGTGTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGAGAGAAATGTACGGATTGTTTTACTGGCAGCACAAATGTGTC  146

seq1  CCTAAACATACAGCATGCCACAGTGGTAGTCATTCTCACAGTCACTGATC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACATACAGCATGCCACAGTGGTAGTCATTCTCACAGTCACTGATC  196

seq1  AGCAATAAATGTTAAAAATTAACAAGAAGTTTCTTTTTCCCTAAACTGCC  247
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCAATAAATGTTAAAAATTAACAAGAAGTTTC-TTTTCCCTAAACTGCC  245

seq1  AAACGACTCTAAGCATTAAATATATTTTAGCAGGAGCTGCTTCTCGGCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGACTCTAAGCATTAAATATATTTTAGCAGGAGCTGCTTCTCGGCCA  295

seq1  CAGTGTGGTAAAAACATTAAATGTATTTTCAAAGTATTACTCCTTCCCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGTAAAAACATTAAATGTATTTTCAAAGTATTACTCCTTCCCCA  345

seq1  GCCTCCGAGTGGCTGTAAACATTAAATATGTTTTATAAAAAGTGCTTTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCGAGTGGCTGTAAACATTAAATATGTTTTATAAAAAGTGCTTTGC  395

seq1  CAGCTACTGGCAGGATAGCTATGAACATCATTTTTCTTTAAAGTTGCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTGGCAGGATAGCTATGAACATCATTTTTCTTTAAAGTTGCCTT  445

seq1  CCAGCTGTGGGGCTGTTTTCTCTCATTTGCTGTATGCTATTTATGTTTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGGGGCTGTTTTCTCTCATTTGCTGTATGCTATTTATGTTTTG  495

seq1  TATACAAAAGCAGACAGGAGACTACCTAGGCCCAATTGTCTACTGCTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAAGCAGACAGGAGACTACCTAGGCCCAATTGTCTACTGCTTTA  545

seq1  GCGTAAGTGATCACTGGAGAGTGGCTGCACCTACATAAAGCCCTCATGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAAGTGATCACTGGAGAGTGGCTGCACCTACATAAAGCCCTCATGGC  595

seq1  CGTAGGAGATGACTAAGCTTCAGTTTCTTTGACTAGATCATCCACATAGA  647
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGTAGGAGATGATTAAGCTTCAGTTTCTTTGACTAGATCATCCACATAGA  645

seq1  AGTCAGCTCTAGTTTCCAAAGCCATTTATGTTTGTTATTCACTGTAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTCTAGTTTCCAAAGCCATTTATGTTTGTTATTCACTGTAAAAT  695

seq1  GTGTCTAAGAATAGCAATAGGCATGTGCTAACATTAGTGTTGAAGAAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAAGAATAGCAATAGGCATGTGCTAACATTAGTGTTGAAGAAACT  745

seq1  AGCGTCAGGAAAACAGAAACTGATGGATCACTCTAATCCATCCAGGTGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGGAAAACAGAAACTGATGGATCACTCTAATCCATCCAGGTGAA  795

seq1  CAAACAGACTCAGAGGCAAATGGCAAACTATTAACCTGATGAGATCTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGACTCAGAGGCAAATGGCAAACTATTAACCTGATGAGATCTTTA  845

seq1  AACCACACATGACAAGCACCTGGAATCCTTTTCTGGAAATTATTTGGGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACATGACAAGCACCTGGAATCCTTTTCTGGAAATTATTTGGGGT  895

seq1  AAAGATATGAAATGCAAAGACATAGAAGACGATGTCACTATATAAACACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGAAATGCAAAGACATAGAAGACGATGTCACTATATAAACACT  945

seq1  TGTTACTGTTAATACTAGAAATATCTTCATTTCAAAAAAGAAAAAAAACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGTTAATACTAGAAATATCTTCATTTCAAAAAAGAAAAAAAACT  995

seq1  CGCAAAAAAAGACATGTGATATTGAGATCATGTTAAAAAAGACTCATATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAAAAAGACATGTGATATTGAGATCATGTTAAAAAAGACTCATATT  1045

seq1  TCCACCTAAATTTAGGAATTC  1068
      |||||||||||||||||||||
seq2  TCCACCTAAATTTAGGAATTC  1066

seq1: chr15_21183512_21184631
seq2: B6Ng01-214C15.g_60_1176

seq1  GAATTCTCCTCTTTATTTTTCATTGTTTTTCTAAGGAACAAAGTATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTTTATTTTTCATTGTTTTTCTAAGGAACAAAGTATCATT  50

seq1  TACACCCAGAACATATTCTTCATTGTGTACTTTACACTTATATTAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCAGAACATATTCTTCATTGTGTACTTTACACTTATATTAAAGGA  100

seq1  TTGAAACTCAATATAAGAAAATATATTTTAAATATATTTTGGAAACACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTCAATATAAGAAAATATATTTTAAATATATTTTGGAAACACTT  150

seq1  AAATAAATATAGGCACTCTTGTATACACTTGAGTGTATTGAACTAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATAGGCACTCTTGTATACACTTGAGTGTATTGAACTAGAAAG  200

seq1  TATTGACTTGTCTTTCAGTTATTGGATATAAATAACTACTCAGATTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTGTCTTTCAGTTATTGGATATAAATAACTACTCAGATTAATA  250

seq1  CAGCCTCACTATAATTCTGTTGATAGTTCAATTCATTGATTATATATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCACTATAATTCTGTTGATAGTTCAATTCATTGATTATATATTGG  300

seq1  AGCTGCATTTGCCAAGATAAACAATGATTTAGCAGTAAGGATCTATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATTTGCCAAGATAAACAATGATTTAGCAGTAAGGATCTATGGAA  350

seq1  CAAAATTTCTTATTGTTTAGCATTGTTGAATTTTGGAATGATATAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTCTTATTGTTTAGCATTGTTGAATTTTGGAATGATATAAGCAG  400

seq1  TTTCAAAATATTTCTGCATTTTTATAATAGGCTTAGTCATTGATCACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATATTTCTGCATTTTTATAATAGGCTTAGTCATTGATCACAAA  450

seq1  GGATTCAGGCTTGTAAGTCAAGATTCTTTTTTCAAGTGATTACAATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGGCTTGTAAGTCAAGATTCTTTTTTCAAGTGATTACAATGTGA  500

seq1  ACTCTGAAATGATACTCTCCCAGGATATGGTAACAATGAAAATACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAATGATACTCTCCCAGGATATGGTAACAATGAAAATACAAATG  550

seq1  TCTTTTCCATTGACCATTAATTCAAAGCACTAAAATGATGGCCTGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCATTGACCATTAATTCAAAGCACTAAAATGATGGCCTGTATTT  600

seq1  ATGGCAGGACCTACTTTGTAATTATGATACAAATACCTTTAAAGCCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGACCTACTTTGTAATTATGATACAAATACCTTTAAAGCCAACC  650

seq1  TTCAAAAACTGGTGTGATAGTTTTTAAAAACCAATATAATATATAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACTGGTGTGATAGTTTTTAAAAACCAATATAATATATAAGAGG  700

seq1  AAAAATGTATACCTTTAGGCTTAAAATCAATCACAAAGCAGCAAATTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTATACCTTTAGGCTTAAAATCAATCACAAAGCAGCAAATTATT  750

seq1  AATTATAGCATTCTGCCACTATACAGCTAAATTCTCTTTGATTAAAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTATAGCATTCTGCCACTATACAGCTAAATTCTCTTTGATT-AAGTTT  799

seq1  TAAGCATCAAGCTAGGCAGCTTCAAAACATATCTTTCTTATCCATGCTAT  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAAGCATCAAGCTAGGCAGCTTC-AAACATATCTTTCTTATCCATGCTAT  848

seq1  GACTATGATCAGACAGTTCCTCAAACAATCGAGATTGTTTCACAGCTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGATCAGACAGTTCCTCAAACAATCGAGATTGTTTCACAGCTCTC  898

seq1  TACTAATAAAGATGTGAATGCCTGCATCTACAGTACTCTATTGCACCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATAAAGATGTGAATGCCTGCATCTACAGTACTCTATTGCACCAGA  948

seq1  AACAGTATATATATATAAACTAATAATAATTCAAAATGTGTTGAATGTTT  1000
       |||||||||||||||||||| || ||||||| ||||| |||||||||||
seq2  GACAGTATATATATATAAACTGAT-ATAATTC-AAATGAGTTGAATGTTT  996

seq1  GTAAAACCATTTATTTATTAAAGAGCAGCAACAATTGC-TTTTTATGCAT  1049
      || |||||||||||||||||||||||  || ||||||| |||||||||||
seq2  GT-AAACCATTTATTTATTAAAGAGCCCCAGCAATTGCTTTTTTATGCAT  1045

seq1  TTAAACATTTCCTTTAGAACACATTTCAAGAGAATCACCC-TC-TCCC-A  1096
      || ||||||||||||| ||||||||||| ||||  | ||| || |||| |
seq2  TT-AACATTTCCTTTAAAACACATTTCAGGAGATCCGCCCATCATCCCGA  1094

seq1  TTCCTTCCCCTCCCATTTACTTTT  1120
      |||||||||||||||  |||||||
seq2  TTCCTTCCCCTCCCA-ATACTTTT  1117