BAC Information

Click to search

BAC

Clone NameB6Ng01-214F07
Chromosome15 (Build37)
Map Location 41,085,982 - 41,172,088
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670013, LOC664872, Zfpm2, Ppia-ps25
Downstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214F07.bB6Ng01-214F07.g
ACCGA031608GA031609
length1,0901,105
definitionB6Ng01-214F07.b B6Ng01-214F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,171,003 - 41,172,088)(41,085,982 - 41,087,087)
sequence
gaattccaagctcagggtcggcttcaaagactttctagaacattggaaca
ctggcgaaggcttagctatatgtccaaatcaatccttaaaggcacttata
ataaaacaatactgaaagagagcacatggatccatacaccagactaacac
agggaagggtttgagtatatgggctatgggaatggcaaggttccaggagg
ctaagtttccatgaaaccctttgccttgggactgcttccaggtttctaaa
cccgtcaagcagatttcactggagtgaatgtagcagttctcctggatctg
actctgccaggcatatggagcagtagggcctcagaaggtcgactcttcct
cccctttagagagtgcaaccctttagcccctctgacctgactagagcccc
acagatctccgcagatagtgtccagtagtgtctgtacacagatcagctcc
aactgactgcttggcttcctttagtcatcactacccaggtcatgtgttac
gcactctgtgttctcccaagagcctcttcgaagtctaggcattgctgtca
gcagagaacagaggtttagttttttgtttgttttggttctgttttttttt
tttttttttttttttttttttcgaaattgcactatattcgttttcagacc
ctcagcaacacatttctcccggttcatggtagacccgttgagtctagtaa
tttagaaacaaatgtatccagtgcatttgagaacgtcatgagtgctataa
ctacacaactgaccatgaataacaactttggtaaaagggttatttttgtc
ctcatgtattagttgaaacttagcagaacaattttattcagattttaaac
agtagctgagtgtgtggggcattgggtcccagactgccctggggttgaat
gtcagctttaagattcattagctatgatactgaccacaattaaaataccc
aacagaaaccaaaataaataataaattaataaataaataattattaataa
cttgacatttcttaattcaggtggaagaaggctaacatcattgacttaat
gggagttctgggtgaagaataaagagactcatagggcatt

gaattcatctgtgttgaattctaagcatcaaaaatattgacaactaaagt
cataattcccagtcatgccttgtgttcacactggtaagtagaaagccttc
tgaactttgcagaatagtgcagatctttcaagtctttgggggatcttttg
agtctgaaataaaaatcctttagacaaaaatgactcccacagcaataaac
ctctgcccttgaaaaatcaatgtattattaattcttgaaagtttcaaagt
cttcaaaaaccaaatctatgaagctgtcatttcctgttactcaggtcaag
acataaatcatattacaagtgctgatcaatttttgaattttaagtaatac
ctaaataataaaaaaaccttttactttctaaagaaagtccaaatttcaaa
ttgcattataatttcacaggtagtgtcttatttttgattaataatggaga
aaatatagtcatttgtggggggaaaagtcacttatgcccaactaacaagg
tatataactcattcattcaaggtgaagaatttttctggtctttcctgata
ggttagtattgttttcagtgaccttagtttcaaactggtcacctgaatag
cattactttatttaataaagaaataatacaaaagaagtaacagtttcatg
atctggtaaaaccgtatccaatacagaatgtttcaactctcaggctcaag
acagatgtttcagtcagatcagtcaatgagcaagaacatgaggttgaaca
gaaaagtgacatggtgtgaggctaaagatatagctgaacaatttagagta
tttgttgatctcccaaggactctggttgatacccagctatcacccatggt
acacagctatctataagttcagtttcatgggatctgactctgttttgtct
tctctgggcaccaggtactcatgtgatacacatacatgcatattacatac
atatatacttccagataaaacactctattcatataaatataccttgtact
tttctcatatagaagctgatgtgtgcaaattatactttcctagctgaaat
aagttctctaaaaaaatgcatctttctaccacataagagttctagtccct
gactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_41171003_41172088
seq2: B6Ng01-214F07.b_45_1134 (reverse)

seq1  AATGCCATAATGAGTCTCTTTATTCTTCA-CCAG-ACTCCCATTAAGTCA  48
      |||||| | |||||||||||||||||||| |||| |||||||||||||||
seq2  AATGCCCT-ATGAGTCTCTTTATTCTTCACCCAGAACTCCCATTAAGTCA  49

seq1  ATGATGTTAGCTTTC-TCCACCTGAATTTAAGGAAATGTCAAGTTATTTA  97
      ||||||||||| ||| ||||||||||||  | |||||||||||||||| |
seq2  ATGATGTTAGCCTTCTTCCACCTGAATT--AAGAAATGTCAAGTTATTAA  97

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTTGGTTTCTGTTTGGT  147
        || ||||||||||||| ||||| ||||||||||||||||||||| |||
seq2  --TAATTATTTATTTATTAATTTA-TTATTTATTTTGGTTTCTGTTGGGT  144

seq1  ATTTTAATTGTGGTCAGTATCATAGCTAATGAATCTTAAAGCTGACATTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTGTGGTCAGTATCATAGCTAATGAATCTTAAAGCTGACATTC  194

seq1  AACCC--AGGCAGTCTGGGA-CCAATG-CCCACACACTCAGCTACTGTTT  243
      |||||   |||||||||||| |||||| ||||||||||||||||||||||
seq2  AACCCCAGGGCAGTCTGGGACCCAATGCCCCACACACTCAGCTACTGTTT  244

seq1  AAAATCTGAATAAAATTGTTCTGCTAAGTTTCAACTAATACATGA-GAC-  291
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  AAAATCTGAATAAAATTGTTCTGCTAAGTTTCAACTAATACATGAGGACA  294

seq1  ATAATAACCCTTTTACCAAAGTTGTTATTCATGGTCAGTTGTGTAGTTAT  341
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCCTTTTACCAAAGTTGTTATTCATGGTCAGTTGTGTAGTTAT  344

seq1  AGCACTCATGACGTTCTCAAATGCACTGGATACATTTGTTTCT-AATTAC  390
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCACTCATGACGTTCTCAAATGCACTGGATACATTTGTTTCTAAATTAC  394

seq1  TAGACTCAACGGGTCTACCATGAACCGGGAGAAATGTGTTGCTGAGGGTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCAACGGGTCTACCATGAACCGGGAGAAATGTGTTGCTGAGGGTC  444

seq1  TGAAAACGAATATAGTGCAATTTCGAAAAAAAAAAAAAAAAAAAAAAAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACGAATATAGTGCAATTTCGAAAAAAAAAAAAAAAAAAAAAAAAA  494

seq1  AAAAACAGAACCAAAACAAACAAAAAACTAAACCTCTGTTCTCTGCTGAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAACCAAAACAAACAAAAAACTAAACCTCTGTTCTCTGCTGAC  544

seq1  AGCAATGCCTAGACTTCGAAGAGGCTCTTGGGAGAACACAGAGTGCGTAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCCTAGACTTCGAAGAGGCTCTTGGGAGAACACAGAGTGCGTAA  594

seq1  CACATGACCTGGGTAGTGATGACTAAAGGAAGCCAAGCAGTCAGTTGGAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACCTGGGTAGTGATGACTAAAGGAAGCCAAGCAGTCAGTTGGAG  644

seq1  CTGATCTGTGTACAGACACTACTGGACACTATCTGCGGAGATCTGTGGGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGTGTACAGACACTACTGGACACTATCTGCGGAGATCTGTGGGG  694

seq1  CTCTAGTCAGGTCAGAGGGGCTAAAGGGTTGCACTCTCTAAAGGGGAGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCAGGTCAGAGGGGCTAAAGGGTTGCACTCTCTAAAGGGGAGGA  744

seq1  AGAGTCGACCTTCTGAGGCCCTACTGCTCCATATGCCTGGCAGAGTCAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGACCTTCTGAGGCCCTACTGCTCCATATGCCTGGCAGAGTCAGA  794

seq1  TCCAGGAGAACTGCTACATTCACTCCAGTGAAATCTGCTTGACGGGTTTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGAACTGCTACATTCACTCCAGTGAAATCTGCTTGACGGGTTTA  844

seq1  GAAACCTGGAAGCAGTCCCAAGGCAAAGGGTTTCATGGAAACTTAGCCTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGGAAGCAGTCCCAAGGCAAAGGGTTTCATGGAAACTTAGCCTC  894

seq1  CTGGAACCTTGCCATTCCCATAGCCCATATACTCAAACCCTTCCCTGTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCTTGCCATTCCCATAGCCCATATACTCAAACCCTTCCCTGTGT  944

seq1  TAGTCTGGTGTATGGATCCATGTGCTCTCTTTCAGTATTGTTTTATTATA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGTGTATGGATCCATGTGCTCTCTTTCAGTATTGTTTTATTATA  994

seq1  AGTGCCTTTAAGGATTGATTTGGACATATAGCTAAGCCTTCGCCAGTGTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTAAGGATTGATTTGGACATATAGCTAAGCCTTCGCCAGTGTT  1044

seq1  CCAATGTTCTAGAAAGTCTTTGAAGCCGACCCTGAGCTTGGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTTCTAGAAAGTCTTTGAAGCCGACCCTGAGCTTGGAATTC  1090


seq1: chr15_41085982_41087087
seq2: B6Ng01-214F07.g_66_1170

seq1  GAATTCATCTGTGTTGAATTCTAAGCATCAAAAATATTGACAACTAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTGTTGAATTCTAAGCATCAAAAATATTGACAACTAAAGT  50

seq1  CATAATTCCCAGTCATGCCTTGTGTTCACACTGGTAAGTAGAAAGCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTCCCAGTCATGCCTTGTGTTCACACTGGTAAGTAGAAAGCCTTC  100

seq1  TGAACTTTGCAGAATAGTGCAGATCTTTCAAGTCTTTGGGGGATCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGCAGAATAGTGCAGATCTTTCAAGTCTTTGGGGGATCTTTTG  150

seq1  AGTCTGAAATAAAAATCCTTTAGACAAAAATGACTCCCACAGCAATAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAATAAAAATCCTTTAGACAAAAATGACTCCCACAGCAATAAAC  200

seq1  CTCTGCCCTTGAAAAATCAATGTATTATTAATTCTTGAAAGTTTCAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTTGAAAAATCAATGTATTATTAATTCTTGAAAGTTTCAAAGT  250

seq1  CTTCAAAAACCAAATCTATGAAGCTGTCATTTCCTGTTACTCAGGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAACCAAATCTATGAAGCTGTCATTTCCTGTTACTCAGGTCAAG  300

seq1  ACATAAATCATATTACAAGTGCTGATCAATTTTTGAATTTTAAGTAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATCATATTACAAGTGCTGATCAATTTTTGAATTTTAAGTAATAC  350

seq1  CTAAATAATAAAAAAACCTTTTACTTTCTAAAGAAAGTCCAAATTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATAAAAAAACCTTTTACTTTCTAAAGAAAGTCCAAATTTCAAA  400

seq1  TTGCATTATAATTTCACAGGTAGTGTCTTATTTTTGATTAATAATGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTATAATTTCACAGGTAGTGTCTTATTTTTGATTAATAATGGAGA  450

seq1  AAATATAGTCATTTGTGGGGGGAAAAGTCACTTATGCCCAACTAACAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGTCATTTGTGGGGGGAAAAGTCACTTATGCCCAACTAACAAGG  500

seq1  TATATAACTCATTCATTCAAGGTGAAGAATTTTTCTGGTCTTTCCTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTCATTCATTCAAGGTGAAGAATTTTTCTGGTCTTTCCTGATA  550

seq1  GGTTAGTATTGTTTTCAGTGACCTTAGTTTCAAACTGGTCACCTGAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTATTGTTTTCAGTGACCTTAGTTTCAAACTGGTCACCTGAATAG  600

seq1  CATTACTTTATTTAATAAAGAAATAATACAAAAGAAGTAACAGTTTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTTATTTAATAAAGAAATAATACAAAAGAAGTAACAGTTTCATG  650

seq1  ATCTGGTAAAACCGTATCCAATACAGAATGTTTCAACTCTCAGGCTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTAAAACCGTATCCAATACAGAATGTTTCAACTCTCAGGCTCAAG  700

seq1  ACAGATGTTTCAGTCAGATCAGTCAATGAGCAAGAACATGAGGTTGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTTTCAGTCAGATCAGTCAATGAGCAAGAACATGAGGTTGAACA  750

seq1  GAAAAGTGACATGGTGTGAGGCTAAAGATATAGCTGAACAATTTAGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGACATGGTGTGAGGCTAAAGATATAGCTGAACAATTTAGAGTA  800

seq1  TTTGTTGATCTCCCAAGGACTCTGGTTGATACCCAGCTATCACCCATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATCTCCCAAGGACTCTGGTTGATACCCAGCTATCACCCATGGT  850

seq1  ACACAGCTATCTATAAGTTCAGTTCCATGGGATCTGACTCTGTTTTGTCT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACACAGCTATCTATAAGTTCAGTTTCATGGGATCTGACTCTGTTTTGTCT  900

seq1  TCTCTGGGCACCAGGTACTCATGTGATACACATACATGCATATTACATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCACCAGGTACTCATGTGATACACATACATGCATATTACATAC  950

seq1  ATATATACTTCCAGATAAAACACTCTATTCATATAAATATACCTTGTACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTTCCAGATAAAACACTCTATTCATATAAATATACCTTGTACT  1000

seq1  TTTCTCATATAG-AGCTGATGTGTGCAAATTATACTTTCCTAGCTGAAAT  1049
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATATAGAAGCTGATGTGTGCAAATTATACTTTCCTAGCTGAAAT  1050

seq1  AAGTTCTCTATAAAATTGGCATTCCTTCCTACCACATTAGAG-TCTAGTC  1098
      |||||||||| |||| | ||||  ||| ||||||||| |||| |||||||
seq2  AAGTTCTCTAAAAAAAT-GCAT--CTTTCTACCACATAAGAGTTCTAGTC  1097

seq1  CCTGACTG  1106
      ||||||||
seq2  CCTGACTG  1105


| Home | SequenceCutter | Blast | Download |