BAC Information

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BAC

Clone NameB6Ng01-215C13
Chromosome15 (Build37)
Map Location 45,759,774 - 45,937,170
singlet/doubletdoublet
Overlap geneLOC100039389, EG432951
Upstream geneEG432950, Kcnv1
Downstream geneLOC100039438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215C13.bB6Ng01-215C13.g
ACCGA032209GA032210
length8871,113
definitionB6Ng01-215C13.b B6Ng01-215C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,759,774 - 45,760,660)(45,936,047 - 45,937,170)
sequence
gaattctttattcttgtcaccatacacacaatataaatttttcagatttg
tgttgattccagaagaattgctgtaaatgccttgttcctattgttatttg
tcattaatgtttgtcaaattatagggcagatattctgttcattttctggt
cagaacccatcctcaactatcatatggtcatctttgcaagtaccacttca
gatcaatatgactcaggtcacattttataaacctggagactagcatcact
cttcttatcaggttgcagtatgactgcgaatatataatatcaagcatctt
aattaaaactgaaccaaaaatttacaattgcaagccatcttattattcta
atatcagatctatcacgtgaattacattttctttctttctagagcaataa
gagctctcttttgtttcttatgcagtttaactctacatattctgtatcac
aactaagtattatcaaatgtaatttaggtctgaattgctgaggtgttcac
agtttcagagaaccatcaatatttaagtgatgtactgtgactgcttgtcc
catatatttctggcattcctgtcaggtataatttttaacaagtggttcca
gtgcatctgatttaacacatgctttaattaatgcatgatttttagtagaa
aacttaaagcacattagtgaataaaaaacattacacaactgtggtgtttt
cattagcttcaatttttatctacattgaatgtattcagtttattttataa
acagaaatgctgtgaaatgtccccacaacacataattatgatgcaagaat
agaagattcctactggacagctgttgtaatcacctcagcacgaattgacc
tctctctctctctctctctctctctctctctctctct

gaattcactccattcatttggaatttaacataaactgtagtatcaatatg
ctgtttctgaagttaaaaataaattccctactttagaagtattgtttcta
tgttacttcctcagttatgccttacaaatttccaatagtaggtcacccat
gtttgtttctgacattttgtttttgatgtggaaagtgctaatgataaagg
gagcctggaaatatcaaaacagtatctaaggccagagttcactgagctct
aacttctaaaacagagctcagtgtgctttctcattctagtggggatttta
cttggaataatagaaatgtgataactatgatcctgaatatgtaagctaat
aaaaataatatctatatacaagtgtattgtctatataaatctacttgatt
ttaaaaatatgttgaactcaatataatacccttctcagctagatactgag
atttatttaacatttttcagaaataactttcatgtattacaaagccttct
ctaaaagtaaaaaaataataataataatagatttttccacatccttgaac
aatacttcaccccatggaaaccaaagatgtctgtgcttagtgaacttaat
ccactgaacaatctttccacagatcttgtcatctgtgcttgagtaataca
ttaaactttagaataagttacaaggacacaaagttttcaaaagccttttc
ccagttacttatgaatataaaatatgttcaatctaaccatacatttcttg
ctgcctgtgttaagtacttaaaaattaaagattgcaagtaagtttttaaa
atcattatcttcaattttaatattatacattaattcactaataaagttta
ctggaaagtggaatgtttgaaatcattgctgcacatacagtcatcctttg
tgttatcagttgcagaagacacatgctcatttatggatagggacactgta
atctcatcttattgatactcactttcacattatactgaaaaatgaaagtg
agatatttagctctgtgaacactaacatatcacccaaaatagttttttat
ttaccatggcaaagaagtccatatgtgtatatagaccaatactaattcta
gattctcaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_45759774_45760660
seq2: B6Ng01-215C13.b_41_927

seq1  GAATTCTTTATTCTTGTCACCATACACACAATATAAATTTTTCAGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCTTGTCACCATACACACAATATAAATTTTTCAGATTTG  50

seq1  TGTTGATTCCAGAAGAATTGCTGTAAATGCCTTGTTCCTATTGTTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTCCAGAAGAATTGCTGTAAATGCCTTGTTCCTATTGTTATTTG  100

seq1  TCATTAATGTTTGTCAAATTATAGGGCAGATATTCTGTTCATTTTCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATGTTTGTCAAATTATAGGGCAGATATTCTGTTCATTTTCTGGT  150

seq1  CAGAACCCATCCTCAACTATCATATGGTCATCTTTGCAAGTACCACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCATCCTCAACTATCATATGGTCATCTTTGCAAGTACCACTTCA  200

seq1  GATCAATATGACTCAGGTCACATTTTATAAACCTGGAGACTAGCATCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATATGACTCAGGTCACATTTTATAAACCTGGAGACTAGCATCACT  250

seq1  CTTCTTATCAGGTTGCAGTATGACTGCGAATATATAATATCAAGCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATCAGGTTGCAGTATGACTGCGAATATATAATATCAAGCATCTT  300

seq1  AATTAAAACTGAACCAAAAATTTACAATTGCAAGCCATCTTATTATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACTGAACCAAAAATTTACAATTGCAAGCCATCTTATTATTCTA  350

seq1  ATATCAGATCTATCACGTGAATTACATTTTCTTTCTTTCTAGAGCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATCTATCACGTGAATTACATTTTCTTTCTTTCTAGAGCAATAA  400

seq1  GAGCTCTCTTTTGTTTCTTATGCAGTTTAACTCTACATATTCTGTATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCTTTTGTTTCTTATGCAGTTTAACTCTACATATTCTGTATCAC  450

seq1  AACTAAGTATTATCAAATGTAATTTAGGTCTGAATTGCTGAGGTGTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTATTATCAAATGTAATTTAGGTCTGAATTGCTGAGGTGTTCAC  500

seq1  AGTTTCAGAGAACCATCAATATTTAAGTGATGTACTGTGACTGCTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAGAACCATCAATATTTAAGTGATGTACTGTGACTGCTTGTCC  550

seq1  CATATATTTCTGGCATTCCTGTCAGGTATAATTTTTAACAAGTGGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTCTGGCATTCCTGTCAGGTATAATTTTTAACAAGTGGTTCCA  600

seq1  GTGCATCTGATTTAACACATGCTTTAATTAATGCATGATTTTTAGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTGATTTAACACATGCTTTAATTAATGCATGATTTTTAGTAGAA  650

seq1  AACTTAAAGCACATTAGTGAATAAAAAACATTACACAACTGTGGTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAGCACATTAGTGAATAAAAAACATTACACAACTGTGGTGTTTT  700

seq1  CATTAGCTTCAATTTTTATCTACATTGAATGTATTCAGTTTATTTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTCAATTTTTATCTACATTGAATGTATTCAGTTTATTTTATAA  750

seq1  ACAGAAATGCTGTGAAATGTCCCCACAACACATAATTATGATGCAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGCTGTGAAATGTCCCCACAACACATAATTATGATGCAAGAAT  800

seq1  AGAAGATTCCTACTGGACAGCTGTTGTAATCACCTCAGCACGAATTGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTCCTACTGGACAGCTGTTGTAATCACCTCAGCACGAATTGACC  850

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  887
      |||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  887


seq1: chr15_45936047_45937170
seq2: B6Ng01-215C13.g_66_1178 (reverse)

seq1  TCAGTCTGAGAATCTAGAATTAGTATT-GTCTATATTACACAATTATTGA  49
      ||||| ||||||||||||||||||||| ||||||| ||||||  ||| ||
seq2  TCAGT-TGAGAATCTAGAATTAGTATTGGTCTATA-TACACA--TATGGA  46

seq1  CTCTTTTGCCATGGGTTAAATAAAAAAACTATTTTGGGTGATTAATGTTA  99
      ||  ||||||||||  ||||| ||||||||||||||||||||  ||||||
seq2  CTTCTTTGCCATGG--TAAAT-AAAAAACTATTTTGGGTGAT--ATGTTA  91

seq1  GTGTTCACAGAGCTAAAATATTCTCACTTTCATTTTTCAGTTATAATGTG  149
      |||||||||||||| ||||| ||||||||||||||||||| |||||||||
seq2  GTGTTCACAGAGCT-AAATA-TCTCACTTTCATTTTTCAG-TATAATGTG  138

seq1  -AAGTGAGTATCAATAAGATGAGATTACAGTTGTCCCTATCCATAAATGA  198
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGTGAGTATCAATAAGATGAGATTACAG-TGTCCCTATCCATAAATGA  187

seq1  GCATGTGTCTTCTGCAACTGATAACACAAAGGATGACTGTATGTGCAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCTTCTGCAACTGATAACACAAAGGATGACTGTATGTGCAGCA  237

seq1  ATGATTTCAAACATTCCACTTTCCAGTAAACTTTATTAGTGAATTAATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCAAACATTCCACTTTCCAGTAAACTTTATTAGTGAATTAATGT  287

seq1  ATAATATTAAAATTGAAGATAATGATTTTAAAAACTTACTTGCAATCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTAAAATTGAAGATAATGATTTTAAAAACTTACTTGCAATCTTT  337

seq1  AATTTTTAAGTACTTAACACAGGCAGCAAGAAATGTATGGTTAGATTGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAGTACTTAACACAGGCAGCAAGAAATGTATGGTTAGATTGAA  387

seq1  CATATTTTATATTCATAAGTAACTGGGAAAAGGCTTTTGAAAACTTTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATATTCATAAGTAACTGGGAAAAGGCTTTTGAAAACTTTGTG  437

seq1  TCCTTGTAACTTATTCTAAAGTTTAATGTATTACTCAAGCACAGATGACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTAACTTATTCTAAAGTTTAATGTATTACTCAAGCACAGATGACA  487

seq1  AGATCTGTGGAAAGATTGTTCAGTGGATTAAGTTCACTAAGCACAGACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGGAAAGATTGTTCAGTGGATTAAGTTCACTAAGCACAGACAT  537

seq1  CTTTGGTTTCCATGGGGTGAAGTATTGTTCAAGGATGTGGAAAAATCTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTTCCATGGGGTGAAGTATTGTTCAAGGATGTGGAAAAATCTAT  587

seq1  TATTATTATTATTTTTTTACTTTTAGAGAAGGCTTTGTAATACATGAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTTTTTTACTTTTAGAGAAGGCTTTGTAATACATGAAAG  637

seq1  TTATTTCTGAAAAATGTTAAATAAATCTCAGTATCTAGCTGAGAAGGGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGAAAAATGTTAAATAAATCTCAGTATCTAGCTGAGAAGGGTA  687

seq1  TTATATTGAGTTCAACATATTTTTAAAATCAAGTAGATTTATATAGACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGAGTTCAACATATTTTTAAAATCAAGTAGATTTATATAGACAA  737

seq1  TACACTTGTATATAGATATTATTTTTATTAGCTTACATATTCAGGATCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGTATATAGATATTATTTTTATTAGCTTACATATTCAGGATCAT  787

seq1  AGTTATCACATTTCTATTATTCCAAGTAAAATCCCCACTAGAATGAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCACATTTCTATTATTCCAAGTAAAATCCCCACTAGAATGAGAAA  837

seq1  GCACACTGAGCTCTGTTTTAGAAGTTAGAGCTCAGTGAACTCTGGCCTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGAGCTCTGTTTTAGAAGTTAGAGCTCAGTGAACTCTGGCCTTA  887

seq1  GATACTGTTTTGATATTTCCAGGCTCCCTTTATCATTAGCACTTTCCACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTTTTGATATTTCCAGGCTCCCTTTATCATTAGCACTTTCCACA  937

seq1  TCAAAAACAAAATGTCAGAAACAAACATGGGTGACCTACTATTGGAAATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACAAAATGTCAGAAACAAACATGGGTGACCTACTATTGGAAATT  987

seq1  TGTAAGGCATAACTGAGGAAGTAACATAGAAACAATACTTCTAAAGTAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCATAACTGAGGAAGTAACATAGAAACAATACTTCTAAAGTAGG  1037

seq1  GAATTTATTTTTAACTTCAGAAACAGCATATTGATACTACAGTTTATGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTTTTAACTTCAGAAACAGCATATTGATACTACAGTTTATGTT  1087

seq1  AAATTCCAAATGAATGGAGTGAATTC  1124
      ||||||||||||||||||||||||||
seq2  AAATTCCAAATGAATGGAGTGAATTC  1113


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