BAC Information

Click to search

BAC

Clone NameB6Ng01-217J07
Chromosome15 (Build37)
Map Location 32,878,477 - 32,879,608
singlet/doubletsinglet
Overlap geneSdc2
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962
Downstream genePgcp, 1700084J12Rik, Tspyl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217J07.bB6Ng01-217J07.g
ACCGA033950GA033951
length1,132820
definitionB6Ng01-217J07.b B6Ng01-217J07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaaatggccttgttgaaagttgcattaggaagtctccaatgca
gagcactggggtttgttgtcttgccccatcctctcttacctgtggttaat
gattgcaaggtgtctgggaataatgggcataccctgcaaagtttgttagc
ggcaagctttggtgacttttaaaagtcatcccgccatcctcttcttcact
aataggagtcagagtgctgccatggatacacctaataaatacctgcagga
atcactgggctgtttaatgaaacctaatgtagtgccattggtgcagctca
gtgggcagttcttattttcctgtgatcaaaatgtgatgtctgaaggattt
tcaatgacagtcctctttcctcctccctcctctcaattttgttttgtttt
taatacatcacaattaacctaggaaggccctgaactcagggtgtagtcaa
tattgtattgtccttgaactcctgatctcccacctctacctctcaatgaa
gggacttcaggcatgtgccaccatgccaggctgctccaatgacatcctct
gattaccatagaatactagtgaaataagatatttaaaaggtaaattcaat
ttccatttgagcttagaggataccagagaacttgaatcacagtaataagg
gaatgaattctgcacttaaggtcactgtagagagatgaatggaactcctg
ctgacccttcttcctgcatatcctcatgatgacttcaacctcccagtatt
tgaagatgcccattctcttctctgttgttcttttgctactttagatttca
aaggtggcagaactttttggccaatgcatgatgatatttagggccagaga
gaacaagtgtttttgtcctgaccactattatgggaagtactgctccattt
attacaaatgcaccatgtgtgttgcagctctaaaggacctcctctcaccc
agattcagttagagttgtggacctcctcctcctagttagtggagtggata
ctaaattttctggattgtttcttatagagcctacttcttgtgggtaagcc
aatctactgttcctatccttttacatctcttctatcactgatgctctgtt
aatacctgttaggactccaaagagggttcttg

gaattctctctctatcctcagttgtgaagagcatctgcagcagctgctga
caatcatcccaaataggctgatgagtccatcaggaatctgctctgcggct
ccatgtaacctcagcggtctgcctcccgctgaccggacaggttcgtggtt
ctccccccggaggctggggttgaggctgtggataagggggaggtagtgaa
ctaggcttcattgattttggaggagaccatggatttatctggtggctccg
attcaggagaaaccttcaatttctcttgtaacacgagagtacaaccacaa
tttaggaaagcaaaatccaattttaacagtgcaagtaatccattctcttt
aaaaatcaacaccaaaacattactggctacaaagtttggctgcctgttac
gagagtacaaccacaattttgggaagcaaaacccaattttaacagtgcaa
acaatccattctctttaaaaatcaacaccaaaaacattactggctacaaa
gtttggctgcctgtttctgcacagaaatgcaagaaggtgaagtccccaat
acttcaaagagacattgccctaaattctatcttttataagtctggtttct
aggataagaattacatagaatattacgcaattcaggcgtatctttagaga
cctttctccttgggttgtctttaatgccgcatgttgtatttttaaattac
tccaaccccagagttacaagttttaagccaactttctgttaccaaatggt
acaaaattttttaatcataaccaataactttatgagccaataatatataa
cccaagacattataaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32878477_32879608
seq2: B6Ng01-217J07.b_45_1176

seq1  GAATTCTTAAATGGCCTTGTTGAAAGTTGCATTAGGAAGTCTCCAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATGGCCTTGTTGAAAGTTGCATTAGGAAGTCTCCAATGCA  50

seq1  GAGCACTGGGGTTTGTTGTCTTGCCCCATCCTCTCTTACCTGTGGTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGGGTTTGTTGTCTTGCCCCATCCTCTCTTACCTGTGGTTAAT  100

seq1  GATTGCAAGGTGTCTGGGAATAATGGGCATACCCTGCAAAGTTTGTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAAGGTGTCTGGGAATAATGGGCATACCCTGCAAAGTTTGTTAGC  150

seq1  GGCAAGCTTTGGTGACTTTTAAAAGTCATCCCGCCATCCTCTTCTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTTTGGTGACTTTTAAAAGTCATCCCGCCATCCTCTTCTTCACT  200

seq1  AATAGGAGTCAGAGTGCTGCCATGGATACACCTAATAAATACCTGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGTCAGAGTGCTGCCATGGATACACCTAATAAATACCTGCAGGA  250

seq1  ATCACTGGGCTGTTTAATGAAACCTAATGTAGTGCCATTGGTGCAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGGCTGTTTAATGAAACCTAATGTAGTGCCATTGGTGCAGCTCA  300

seq1  GTGGGCAGTTCTTATTTTCCTGTGATCAAAATGTGATGTCTGAAGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTTCTTATTTTCCTGTGATCAAAATGTGATGTCTGAAGGATTT  350

seq1  TCAATGACAGTCCTCTTTCCTCCTCCCTCCTCTCAATTTTGTTTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACAGTCCTCTTTCCTCCTCCCTCCTCTCAATTTTGTTTTGTTTT  400

seq1  TAATACATCACAATTAACCTAGGAAGGCCCTGAACTCAGGGTGTAGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATCACAATTAACCTAGGAAGGCCCTGAACTCAGGGTGTAGTCAA  450

seq1  TATTGTATTGTCCTTGAACTCCTGATCTCCCACCTCTACCTCTCAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTGTCCTTGAACTCCTGATCTCCCACCTCTACCTCTCAATGAA  500

seq1  GGGACTTCAGGCATGTGCCACCATGCCAGGCTGCTCCAATGACATCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTCAGGCATGTGCCACCATGCCAGGCTGCTCCAATGACATCCTCT  550

seq1  GATTACCATAGAATACTAGTGAAATAAGATATTTAAAAGGTAAATTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCATAGAATACTAGTGAAATAAGATATTTAAAAGGTAAATTCAAT  600

seq1  TTCCATTTGAGCTTAGAGGATACCAGAGAACTTGAATCACAGTAATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTGAGCTTAGAGGATACCAGAGAACTTGAATCACAGTAATAAGG  650

seq1  GAATGAATTCTGCACTTAAGGTCACTGTAGAGAGATGAATGGAACTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTCTGCACTTAAGGTCACTGTAGAGAGATGAATGGAACTCCTG  700

seq1  CTGACCCTTCTTCCTGCATATCCTCATGATGACTTCAACCTCCCAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTTCTTCCTGCATATCCTCATGATGACTTCAACCTCCCAGTATT  750

seq1  TGAAGATGCCCATTCTCTTCTCTGTTGTTCTTTTGCTACTTTAGA-TTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGAAGATGCCCATTCTCTTCTCTGTTGTTCTTTTGCTACTTTAGATTTCA  800

seq1  AAGGTGGCAGAAC-TTTTGGCCAATGCATGATGATATT--AGGCCAGAGA  846
      ||||||||||||| ||||||||||||||||||||||||   |||||||||
seq2  AAGGTGGCAGAACTTTTTGGCCAATGCATGATGATATTTAGGGCCAGAGA  850

seq1  GAAC-ACTGTTTTTGTCCTGACCACTA-TAT-GGAAGTACTGCTCCA-TT  892
      |||| | |||||||||||||||||||| ||| ||||||||||||||| ||
seq2  GAACAAGTGTTTTTGTCCTGACCACTATTATGGGAAGTACTGCTCCATTT  900

seq1  ATTACAAATGCACCATGTGTGTTGCAGCTCT-AAGGACCT-CTCTTCACC  940
      ||||||||||||||||||||||||||||||| |||||||| ||||   ||
seq2  ATTACAAATGCACCATGTGTGTTGCAGCTCTAAAGGACCTCCTCTCACCC  950

seq1  AGATTCAGTTAGAGTTGTGGACCTCCT-CTCCTTAGTAGTGGAGTGGTAT  989
      ||||||||||||||||||||||||||| |||||   ||||||||||| ||
seq2  AGATTCAGTTAGAGTTGTGGACCTCCTCCTCCTAGTTAGTGGAGTGG-AT  999

seq1  ACTTAATTTTCTGGA-TGTTTCTTATAAGAGCCTACTCTTTGTGGGTAAA  1038
      ||| ||||||||||| |||||||||| ||||||||||  |||||||| ||
seq2  ACTAAATTTTCTGGATTGTTTCTTAT-AGAGCCTACTTCTTGTGGGT-AA  1047

seq1  GCCAATCCTAACCTGTTTCCCTAT-CTTTTACATCTCTTCTATCACTTGA  1087
      |||||| |||  |||||  ||||| ||||||||||||||||||||| |||
seq2  GCCAAT-CTA--CTGTT--CCTATCCTTTTACATCTCTTCTATCAC-TGA  1091

seq1  TGGCTCTGTTTAATAGCTGTTTAGGACTCCAGAAGAGGGTTCTTG  1132
      | |||||| |||||| ||| ||||||||||| |||||||||||||
seq2  T-GCTCTG-TTAATACCTG-TTAGGACTCCA-AAGAGGGTTCTTG  1132


| Home | SequenceCutter | Blast | Download |