BAC Information

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BAC

Clone NameB6Ng01-218F09
Chromosome15 (Build37)
Map Location 91,339,764 - 91,454,325
singlet/doubletdoublet
Overlap geneSlc2a13
Upstream geneCpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126
Downstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1, Pdzrn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218F09.bB6Ng01-218F09.g
ACCGA034493GA034494
length1,185242
definitionB6Ng01-218F09.b B6Ng01-218F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,453,131 - 91,454,325)(91,339,764 - 91,340,005)
sequence
gaattccacacatgacagtacaacccaaaggtggaaaaggtagaagaata
ttagacagccgccattttttgcagacattggaggaatcagccatcagtca
aaggtcaagatttccaggacacaggagagaactcctcttttcttgtgcct
aatcaccccacactgaattccacaatgaggactctagcccttgtctgcct
tgtacctgcactggttacagaaaccaaagcccagtagcaataccagtaac
ttgagtcatgaacaactattacagctacattcaagtgtaactagtgttct
tagcactgcaacaaattacatatctgagcctagggaataaaggggaagac
aagggaatatctaatttcttcagcttttatggtggaaggtttaaaaagaa
tcagcaagtttgctatttcaagcatagtgtagttactgtcattgttcatt
tagaaaggagaaatgtaagtagctgaattcctcatactgcatagcaagaa
actgtggccacaaactaaggtagtgtttactatatagttgcatcatagtt
accaaaagtaggtaaactgttggagcagatgctatagagaaatgagaagg
ctagtttgacttagacacagaagttttgagagctcaccatacagaatgtg
agttcaaagcagtgtctcctgacaccgttttagcactttagagttacgct
gctatcaatgtgatttttacacacctcaatgcggtacccataagcatatt
tatcaaacaatgtcaagtaaaccttatatattaagtggtttcttcatact
ggtttgtgatggatgataaaccatccaatgagtagcaaaaccagttgtga
ctgatataagttctcaaatgagtaagagtagcccaccctccatatgtgca
ttatgtgtaggagaatttttttttagctttaaatttctcctgtatcacaa
tcccatacaaatccagtcccctttgtgtttgactgactcgtttgtttcat
tgtatcatcattttaagacagaggtttgggataaagtggccaacagaaag
tgttctgagatgtgggaatgatgttactttatattttatggtggctattt
catctcatttgggttggaataaataactcaactttatctggctagaacat
tggctcacgttattattcattatgtaccttagctc
tgtagccaaccaccagcccagacacgaatatgtctaccattcaagacatt
tcctttctactgacccctttccatttgattgtcacagccagggtcagggg
ctgataagagtcctgtgcctgtgtttttgcttgcttgctaatgaacttca
cagggaaccctggaacataggctctttgtgtctgtcttcctttaggcagc
tcgtcttattcttcactaacatgggctggggggggggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_91453131_91454325
seq2: B6Ng01-218F09.b_45_1229 (reverse)

seq1  GAGCTTAAGGTACATAAATGAATTAATAAAACGTGGAAGCAATG-TCTAG  49
      |||| |||||||||| |||||| ||||  ||||| ||  ||||| |||||
seq2  GAGC-TAAGGTACAT-AATGAA-TAAT--AACGT-GAGCCAATGTTCTAG  44

seq1  -CAGATTAAAAGGTGAGGTTTATTTAT--CACACAAAATGAGGAAGGAAA  96
       |||||  |||| ||||  ||||||||  ||  | |||||||  | ||||
seq2  CCAGAT--AAAGTTGAG--TTATTTATTCCAACCCAAATGAG--ATGAAA  88

seq1  TAAGCA-CATAAAATATAAAGTAACATCCATTCCAACCATCTCAGAACAC  145
      ||  || |||||||||||||||||||| |||||| | |||||||||||||
seq2  TAGCCACCATAAAATATAAAGTAACAT-CATTCCCA-CATCTCAGAACAC  136

seq1  TTTCTGTTGGCCACTTTATTCCCAAACCTCTTGTCTTAAAATGATGATAC  195
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TTTCTGTTGGCCACTTTA-TCCCAAACCTC-TGTCTTAAAATGATGATAC  184

seq1  AATGAAACAAACGAGTCAGTCAAACACAAAGGGGACTGGATTTGTATGGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACAAACGAGTCAGTCAAACACAAAGGGGACTGGATTTGTATGGG  234

seq1  ATTGTGATACAGGAGAAATTTAAAGCT-AAAAAAAATTCTCCTACACATA  294
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTGTGATACAGGAGAAATTTAAAGCTAAAAAAAAATTCTCCTACACATA  284

seq1  ATGCACATATGGAGGGTGGGCTACTCTTACTCATTTGAGAACTTATATCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATATGGAGGGTGGGCTACTCTTACTCATTTGAGAACTTATATCA  334

seq1  GTCACAACTGGTTTTGCTACTCATTGGATGGTTTATCATCCATCACAAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACTGGTTTTGCTACTCATTGGATGGTTTATCATCCATCACAAAC  384

seq1  CAGTATGAAGAAACCACTTAATATATAAGGTTTACTTGACATTGTTTGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAAGAAACCACTTAATATATAAGGTTTACTTGACATTGTTTGAT  434

seq1  AAATATGCTTATGGGTACCGCATTGAGGTGTGTAAAAATCACATTGATAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCTTATGGGTACCGCATTGAGGTGTGTAAAAATCACATTGATAG  484

seq1  CAGCGTAACTCTAAAGTGCTAAAACGGTGTCAGGAGACACTGCTTTGAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTAACTCTAAAGTGCTAAAACGGTGTCAGGAGACACTGCTTTGAAC  534

seq1  TCACATTCTGTATGGTGAGCTCTCAAAACTTCTGTGTCTAAGTCAAACTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCTGTATGGTGAGCTCTCAAAACTTCTGTGTCTAAGTCAAACTA  584

seq1  GCCTTCTCATTTCTCTATAGCATCTGCTCCAACAGTTTACCTACTTTTGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCATTTCTCTATAGCATCTGCTCCAACAGTTTACCTACTTTTGG  634

seq1  TAACTATGATGCAACTATATAGTAAACACTACCTTAGTTTGTGGCCACAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGATGCAACTATATAGTAAACACTACCTTAGTTTGTGGCCACAG  684

seq1  TTTCTTGCTATGCAGTATGAGGAATTCAGCTACTTACATTTCTCCTTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCTATGCAGTATGAGGAATTCAGCTACTTACATTTCTCCTTTCT  734

seq1  AAATGAACAATGACAGTAACTACACTATGCTTGAAATAGCAAACTTGCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACAATGACAGTAACTACACTATGCTTGAAATAGCAAACTTGCTG  784

seq1  ATTCTTTTTAAACCTTCCACCATAAAAGCTGAAGAAATTAGATATTCCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTAAACCTTCCACCATAAAAGCTGAAGAAATTAGATATTCCCT  834

seq1  TGTCTTCCCCTTTATTCCCTAGGCTCAGATATGTAATTTGTTGCAGTGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCCCTTTATTCCCTAGGCTCAGATATGTAATTTGTTGCAGTGCT  884

seq1  AAGAACACTAGTTACACTTGAATGTAGCTGTAATAGTTGTTCATGACTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTAGTTACACTTGAATGTAGCTGTAATAGTTGTTCATGACTCA  934

seq1  AGTTACTGGTATTGCTACTGGGCTTTGGTTTCTGTAACCAGTGCAGGTAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGGTATTGCTACTGGGCTTTGGTTTCTGTAACCAGTGCAGGTAC  984

seq1  AAGGCAGACAAGGGCTAGAGTCCTCATTGTGGAATTCAGTGTGGGGTGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGACAAGGGCTAGAGTCCTCATTGTGGAATTCAGTGTGGGGTGAT  1034

seq1  TAGGCACAAGAAAAGAGGAGTTCTCTCCTGTGTCCTGGAAATCTTGACCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACAAGAAAAGAGGAGTTCTCTCCTGTGTCCTGGAAATCTTGACCT  1084

seq1  TTGACTGATGGCTGATTCCTCCAATGTCTGCAAAAAATGGCGGCTGTCTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGATGGCTGATTCCTCCAATGTCTGCAAAAAATGGCGGCTGTCTA  1134

seq1  ATATTCTTCTACCTTTTCCACCTTTGGGTTGTACTGTCATGTGTGGAATT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTCTACCTTTTCCACCTTTGGGTTGTACTGTCATGTGTGGAATT  1184

seq1  C  1195
      |
seq2  C  1185

seq1: chr15_91339764_91340005
seq2: B6Ng01-218F09.g_69_310

seq1  TGTAGCCAACCACCAGCCCAGACACGAATATGTCTACCATTCAAGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCAACCACCAGCCCAGACACGAATATGTCTACCATTCAAGACATT  50

seq1  TCCTTTCTACTGACCCCTTTCCATTTGATTGTCACAGCCAGGGTCAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTACTGACCCCTTTCCATTTGATTGTCACAGCCAGGGTCAGGGG  100

seq1  CTGATAAGAGTCCTGTGCCTGTGTTTTTGCTTGCTTGCTAATGAACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAGAGTCCTGTGCCTGTGTTTTTGCTTGCTTGCTAATGAACTTCA  150

seq1  CAGGGAACCCTGGAACATAGGCTCTTTGTGTCTGTCTTCCTTTAGGCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACCCTGGAACATAGGCTCTTTGTGTCTGTCTTCCTTTAGGCAGC  200

seq1  TCGTCTTATTCTTCACTAACATGGGCTGGGGGGGGGGGGGGG  242
      ||||||||||||||||||||||||||||||||||||||| ||
seq2  TCGTCTTATTCTTCACTAACATGGGCTGGGGGGGGGGGGTGG  242