BAC Information

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BAC

Clone NameB6Ng01-218M04
Chromosome15 (Build37)
Map Location 37,989,456 - 38,075,051
singlet/doubletdoublet
Overlap geneEdd1
Upstream geneLOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478
Downstream geneOdf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218M04.bB6Ng01-218M04.g
ACCGA034804GA034805
length9611,179
definitionB6Ng01-218M04.b B6Ng01-218M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,989,456 - 37,990,420)(38,073,863 - 38,075,051)
sequence
gaattcatagaccttacatgttcttgtttattttgctagcctctatatta
aaaaaaaaagaaaaaaaaaaaaaagtctgaattgaggctgtataaataaa
gacggctcatcttctggctactcttccacaggacctacaaccgtccaggg
ccccatagtcctttctaaccaaatctaaatcccggcagctttaagagaaa
ggaaagcatccagaagacgcttcccaaatacaacatttacaatccttaaa
atgcaaacggaaaataagggagacactcagattccttcaaatgaaatgga
gaagagggcctggctgtcacctgaggaggtgggaaggtaccttaggaaga
ggatttccttaggaaacaaaggtcaacaaaaacttacaagtacaggcata
cctctaaaaaaaggaaaaggcaccattaatctgctgaacttgctcgtctt
ttctgcgctccacttgaagcaagtctaaagactccaccttacacttctct
aaactcttctaggttcatgtcattaccttggcaaagtctgtaaaggagac
aacccagacaaattctaagcacaacatctagagcttaaaaaagcctggcc
tttaaactaaatcctggtgttgatctgaaacactcaagagtggctctccc
cctcctcacacaccaaacctgatccttatcatgtgtccccaggaaaaccc
ttgcaaataattgtgattatccttttattttatgtgtatgtatatttccc
ctgcatatctgatcacatcttgggtgactggtgccacagaggggagatgg
tggtactgaatccccagaaactggagctacagaggggtggtgtagagctt
ccagagagctgctaggaatttagcagagggtacgctggaaggtatataaa
atctcttcttacagtctggtccgatgaagattgacgaggatgaccatcat
gtatgtctccc
gaattccgggtccttgtgcttgcgaggaaaatattttaccatctaagtca
cttccccagacttctcattggttgctgcaaaaaattaaaaaaaaaaaaaa
aagcatgatacacatcacacgcctgcacatgtgctagagtgctgggcata
ctgcaactgctggccttgctactgttagagcttccctcctgctggtcaca
ggatgtagcttcatctacagtctgtcagctatgaatactcatgccttgta
tgacacaactcaagagtgtggttgaaacagactacgatgggagtcatact
tcataaaacacttgtatagcctctagagaggtctttgctttgttccttac
tgttcataggccactgtatcattaaataactgcccagtggcagttcagtt
tcaccctgatgccagttgacaagtgatctcagacatcaacaaatgaattg
ctggcctaaggcacagcactaactcagacagctaggtcaaacactggcca
gtagtccttcatgacctgcattcgataaaggccctttgtggccttcacaa
ggatgtgttaaaaatcatactcaaaataaatcctgctatgaagtaagcta
agaaacttcagagactggacatgctctgatgtgaaatccaccctgtgatg
gggctgcagggctcccctaagtgccagtcctaataattggagaggtgtgc
atagcactcagcaaagagctgctgatgcccttggcagaaaatggagcagc
aggaggagataaggggaaagtgctgcatgtttgattccatttaaattata
agaatgtaagccaatgtgtccctaaatccataaagaatgtataaaggagg
ttcacttacatacagtgtggttgtctctcagtaatagaatttagtccaat
ttcctttgttctttctacttcttttccttgtaagtctcaaggttataaaa
gctttgttggaatctataagcatcatttttgtagtctgggaacaacagaa
acagtctttttttctgaagactaataatacaacatattttttgaaacatg
cacaatctcatctaaactttcttcaatgctgtgcatactcctcataccca
gttctaaaaaagcctgagaacagaatgatttctgctttacgagcttaaaa
taatcccatatattgtgtaaaatttttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_37989456_37990420
seq2: B6Ng01-218M04.b_41_1001

seq1  GAATTCATATAACCTTACATGTAAATTGTTTATTTAAACTAGCCTCTATA  50
      |||||||||  |||||||||||   ||||||||||   ||||||||||||
seq2  GAATTCATA-GACCTTACATGT-TCTTGTTTATTT-TGCTAGCCTCTATA  47

seq1  TTAAAAAAAAAAAAAAAAAAAAAAAAAGTCTGAATTGAGGCTGTAGAGAT  100
      |||||||||||| |||||||||||||||||||||||||||||||| | ||
seq2  TTAAAAAAAAAAGAAAAAAAAAAAAAAGTCTGAATTGAGGCTGTATAAAT  97

seq1  AAAGACGGCTCAGCAGCTGGCTACTCTTCCAGAGGACAGACAACCATCCA  150
      |||||||||||| |  ||||||||||||||| |||||  |||||| ||||
seq2  AAAGACGGCTCATCTTCTGGCTACTCTTCCACAGGACCTACAACCGTCCA  147

seq1  GGGCCCCAAAGTCCTTTCTAACCAAATCTAAATCCCGGCAGCTTTAAGAG  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCATAGTCCTTTCTAACCAAATCTAAATCCCGGCAGCTTTAAGAG  197

seq1  AAAGGAAAGCATCCAGAAGACACTACACAAATACAACATTTAGAATCCTT  250
      ||||||||||||||||||||| || | ||||||||||||||| |||||||
seq2  AAAGGAAAGCATCCAGAAGACGCTTCCCAAATACAACATTTACAATCCTT  247

seq1  AAAATGCAAACGGAGAAGAAGGGAGACACTCAGATTCCTTCAAATGCAAA  300
      |||||||||||||| || |||||||||||||||||||||||||||| |||
seq2  AAAATGCAAACGGAAAATAAGGGAGACACTCAGATTCCTTCAAATG-AAA  296

seq1  TGGAGAAGAGGGCCTGGCTGTCAGCCAGCAGGAGGTGGGAAGGTACCTTA  350
      ||||||||||||||||||||||| || | |||||||||||||||||||||
seq2  TGGAGAAGAGGGCCTGGCTGTCA-CCTG-AGGAGGTGGGAAGGTACCTTA  344

seq1  GGAAGAGGATTTCCAGAGGAAACAAAGGTCAACAAAAACTTACAAGTACA  400
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGATTTCCTTAGGAAACAAAGGTCAACAAAAACTTACAAGTACA  394

seq1  GGCATACCTCTAAAAAAAGGAAAAGGCACCATTAGTCTGCTGAGCTTGCA  450
      |||||||||||||||||||||||||||||||||| |||||||| ||||| 
seq2  GGCATACCTCTAAAAAAAGGAAAAGGCACCATTAATCTGCTGAACTTGCT  444

seq1  AGTCTTTTCTGCGCTCCACTTAAAGCAAGTCTAAAGACTCCACCTTACAC  500
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGTCTTTTCTGCGCTCCACTTGAAGCAAGTCTAAAGACTCCACCTTACAC  494

seq1  TTCTCTAAACTCTTCTAGTTTCAAGTCATTAGCTTGGCAGAGTCTGTAAA  550
      |||||||||||||||||| |||| ||||||| ||||||| ||||||||||
seq2  TTCTCTAAACTCTTCTAGGTTCATGTCATTACCTTGGCAAAGTCTGTAAA  544

seq1  GTAGACAACCCAGACAAATTCTAAGCACAACATCTAGAGCTTAAAAAAGC  600
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAACCCAGACAAATTCTAAGCACAACATCTAGAGCTTAAAAAAGC  594

seq1  CTGGCCTTTAAACTAAATCCTGGTGTTGATCTGAAACACTCAAGAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTTAAACTAAATCCTGGTGTTGATCTGAAACACTCAAGAGTGGC  644

seq1  TCTCCCCCTCCTCACACACCAAACCTGATCCTTATCATGTGTCCCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTCCTCACACACCAAACCTGATCCTTATCATGTGTCCCCAGGA  694

seq1  AAACACTTGCAAATAATTGTAAATTATCCTTTTATTTTATGTGTATGTAT  750
      |||| |||||||||||||||  ||||||||||||||||||||||||||||
seq2  AAACCCTTGCAAATAATTGT-GATTATCCTTTTATTTTATGTGTATGTAT  743

seq1  ATTTCCCCTGCATATTTGTTCACTACTTGTGTGCCTGGTGCCACAGAGGG  800
      ||||||||||||||| || ||||  |||| ||| ||||||||||||||||
seq2  ATTTCCCCTGCATATCTGATCACATCTTGGGTGACTGGTGCCACAGAGGG  793

seq1  CAGAAGGTGGTATGGGATCCCCTGAAACTGGAGTTACAGAGGGTTGGTTG  850
       ||| |||||||  | |||||| |||||||||| ||||||||| ||||  
seq2  GAGATGGTGGTACTGAATCCCCAGAAACTGGAGCTACAGAGGGGTGGTGT  843

seq1  TGAGCTTCCAGATGGATGCTAGGAATTTAACCGA-GGTCCTCTGG-AGGT  898
       |||||||||||  | ||||||||||||| | || ||| | |||| ||||
seq2  AGAGCTTCCAGAGAGCTGCTAGGAATTTAGCAGAGGGTACGCTGGAAGGT  893

seq1  CTTTAAAATCGCTTTTTAAAGTCTGGTCCGTTGAAG-TTGAAGAGGATGA  947
       | ||||||| ||| ||| ||||||||||| ||||| |||| ||||||||
seq2  ATATAAAATCTCTTCTTACAGTCTGGTCCGATGAAGATTGACGAGGATGA  943

seq1  CCATCATGTATGTCTCCC  965
      ||||||||||||||||||
seq2  CCATCATGTATGTCTCCC  961

seq1: chr15_38073863_38075051
seq2: B6Ng01-218M04.g_62_1240 (reverse)

seq1  CCAAATATTTTACAC-ATATTAGTGAATTTAATTTTTATAACCTCATAAA  49
      ||||| ||||||||| ||||      ||   ||| || ||| ||| ||||
seq2  CCAAAAATTTTACACAATAT------ATGGGATTATTTTAAGCTCGTAAA  44

seq1  GCAGAAACCATTTCTG-TCTCTGCTTTTTTAAGAAACTGGGGTATGGAGA  98
      ||||||| || ||||| |||| |  ||||| || |||| |||||| ||| 
seq2  GCAGAAATCA-TTCTGTTCTCAGGCTTTTTTAG-AACT-GGGTAT-GAGG  90

seq1  GGTATGGCACAGGCATTGAAGAAAG-TTAGATGAGATTGTGCATGTTTCA  147
       |||| ||||| ||||||||||||| ||||||||||||||||||||||||
seq2  AGTAT-GCACA-GCATTGAAGAAAGTTTAGATGAGATTGTGCATGTTTCA  138

seq1  AAAAATATGTTGTA-TATTAGTCTTCAGAAAAAAAGACTGTTTCTGTTGT  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAATATGTTGTATTATTAGTCTTCAGAAAAAAAGACTGTTTCTGTTGT  188

seq1  TCCCAGACTACAAAAATGATGCTTATAGATTCCAACAAAGCTTTTATAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACTACAAAAATGATGCTTATAGATTCCAACAAAGCTTTTATAAC  238

seq1  CCTGAGACTTACAAAGGAAAAGAAGTAGAAAGAAACAAAGGAAATTGGAC  296
      | |||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  CTTGAGACTTAC-AAGGAAAAGAAGTAGAAAG-AACAAAGGAAATTGGAC  286

seq1  TAAATTCTATTACTGAGAGACAACCACACTGTATGTAAGTGAACCTCCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTATTACTGAGAGACAACCACACTGTATGTAAGTGAACCTCCTT  336

seq1  TATACATTCTTTATGGATTTAGGGACACATTGGCTTACATTCTTATAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTCTTTATGGATTTAGGGACACATTGGCTTACATTCTTATAATT  386

seq1  TAAATGGAATCAAACATGCAGCACTTTCCCCTTATCTCCTCCTGCTGCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAATCAAACATGCAGCACTTTCCCCTTATCTCCTCCTGCTGCTC  436

seq1  CATTTTCTGCCAAGGGCATCAGCAGCTCTTTGCTGAGTGCTATGCACACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGCCAAGGGCATCAGCAGCTCTTTGCTGAGTGCTATGCACACC  486

seq1  TCTCCAATTATTAGGACTGGCACTTAGGGGAGCCCTGCAGCCCCATCACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATTATTAGGACTGGCACTTAGGGGAGCCCTGCAGCCCCATCACA  536

seq1  GGGTGGATTTCACATCAGAGCATGTCCAGTCTCTGAAGTTTCTTAGCTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGATTTCACATCAGAGCATGTCCAGTCTCTGAAGTTTCTTAGCTTA  586

seq1  CTTCATAGCAGGATTTATTTTGAGTATGATTTTTAACACATCCTTGTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGCAGGATTTATTTTGAGTATGATTTTTAACACATCCTTGTGAA  636

seq1  GGCCACAAAGGGCCTTTATCGAATGCAGGTCATGAAGGACTACTGGCCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAAGGGCCTTTATCGAATGCAGGTCATGAAGGACTACTGGCCAG  686

seq1  TGTTTGACCTAGCTGTCTGAGTTAGTGCTGTGCCTTAGGCCAGCAATTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGACCTAGCTGTCTGAGTTAGTGCTGTGCCTTAGGCCAGCAATTCA  736

seq1  TTTGTTGATGTCTGAGATCACTTGTCAACTGGCATCAGGGTGAAACTGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATGTCTGAGATCACTTGTCAACTGGCATCAGGGTGAAACTGAA  786

seq1  CTGCCACTGGGCAGTTATTTAATGATACAGTGGCCTATGAACAGTAAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTGGGCAGTTATTTAATGATACAGTGGCCTATGAACAGTAAGGA  836

seq1  ACAAAGCAAAGACCTCTCTAGAGGCTATACAAGTGTTTTATGAAGTATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAAAGACCTCTCTAGAGGCTATACAAGTGTTTTATGAAGTATGA  886

seq1  CTCCCATCGTAGTCTGTTTCAACCACACTCTTGAGTTGTGTCATACAAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCGTAGTCTGTTTCAACCACACTCTTGAGTTGTGTCATACAAGG  936

seq1  CATGAGTATTCATAGCTGACAGACTGTAGATGAAGCTACATCCTGTGACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTATTCATAGCTGACAGACTGTAGATGAAGCTACATCCTGTGACC  986

seq1  AGCAGGAGGGAAGCTCTAACAGTAGCAAGGCCAGCAGTTGCAGTATGCCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGGGAAGCTCTAACAGTAGCAAGGCCAGCAGTTGCAGTATGCCC  1036

seq1  AGCACTCTAGTACATGTGCAGGTGTGTGATGTGTATCATGCTTTTTTTTT  1096
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AGCACTCTAGCACATGTGCAGGCGTGTGATGTGTATCATGCTTTTTTTTT  1086

seq1  TTTTTTTAATTTTTTGCAGCAACCAATGAGAAGTCTGGGGAAGTGACTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATTTTTTGCAGCAACCAATGAGAAGTCTGGGGAAGTGACTTA  1136

seq1  GATGGTAAAATATTTTCCTTGCAAGTACAAGGACCCTGAATTC  1189
      ||||||||||||||||||| ||||| |||||||||| ||||||
seq2  GATGGTAAAATATTTTCCTCGCAAGCACAAGGACCCGGAATTC  1179