BAC Information

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BAC

Clone NameB6Ng01-218M11
Chromosome15 (Build37)
Map Location 40,696,846 - 40,872,980
singlet/doubletdoublet
Overlap geneZfpm2
Upstream geneLrp12, LOC100039130, LOC670013, LOC664872, Ppia-ps25
Downstream geneOxr1, Abra, EG432946, LOC432947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218M11.bB6Ng01-218M11.g
ACCGA034818GA034819
length1,2341,100
definitionB6Ng01-218M11.b B6Ng01-218M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,696,846 - 40,698,083)(40,871,881 - 40,872,980)
sequence
gaattcattctcaaggccattcaaactaatatggtgacaattacctgagt
ttgtaatgcacacaacagttcagagcatccttagataaattgttccctag
acaatgatgcatgcattgataccttcctataactgtctagaagccttagc
aacaaggaaatggtttgcaatcttgagaaacacagtggtttgagttgctg
tggatttttagaaactgccagtgtctttacagaattttcaggctccacat
gcggcctctacaagggaatgtttctctttcactgccaccatcatgcgaac
ttttgcagtgcaattacaagcgacttcagagttctctgtgatagactaat
agctactgacctgcttctgccacatagaacctcctcatatacttttaata
ccatctgtggcgctctgctcttaccacgggtgggcatttttctctatata
gactcatctttggcaaatcattaatagaacatcaaaaagatcccatctgt
tagagttacatatggttaagatcagaattatcaaatatctcatttttttc
tttattcctctttcttatcctcacaataaatgtagttgtcagcaggataa
gttcatgtgccggataaggtcacaatttcatttagtgacaacttccaaca
gtaggaacttacaaggttcgatttattaaagagtcagaagggataagatc
actgcttggccaggctgatttatcagagtttgactggagtacttgaatag
ggaatgtcgtatttcaagtttatgttcaaaacagtagtttagtgtgtgtt
gtgactgtatgactcaaaaattgagacagggaattagaaaagctatcctt
atatggcaatttgttgccatcacctaacagctatcattttctgagtcaaa
caatgcttagggtttcatcaatatagcataaaagaaatggagctgtttgt
cttagaaggaagatgggacatgcagttattagtgctggaggaaactgttt
ggtggcaagactgtggtttggctttgtagatagtcggcaggaagtgttct
tacttcttggtgtgtctggcaggcagctgtcaatggttaaacctacaata
gcaaagagcattggccttaacttgggccacctgctgacttggaaaagttc
tcaagatccttgacgctttttgtactcagcatgtgcactccaggcgtcca
atgttgtatacatgagtttatggttttccaacca

gaattcatatgctgccatccgactgtagtaagtgttccattgaacattga
aaaaagcattccaggttaaagatggaatttctagacatttaaatttcata
tttctggtacgtgagacttagagggtttaatcatccccttatccagaaat
gggcagtagtttttaatggctagtcattagaccctctccttgctatacaa
aggaatgagctgcacaattagccaatgtgcaactaaacagaacattccat
ttaatgaggctcgataagaagcatggttcttatatatttaagcagaattt
gcggggcattctggatatcaacctatctgggtgtagatagctctatctat
agtatgagtacttatgcatatattatgatatctatcagatccttattatc
tcaacacagattattctattgaatgaattcctatgcattccaaccatttc
atttgaacagcagccgtagtgtgaatgtacaagtttgaaatattagctaa
agaaattttctataatttctataggcttatacctttttgccaggttttgt
gaagctccccttaatatgtataaatttaaaataaaagattaaaactttaa
aaaacagaaaaaaaccctgcattccattttggtatcaaagataatgaagg
cgcaagctgaaagttaattttcctctcttaggatgattttttttcctcca
taaacgtttaatcataaaagaatcattagaaccgcaatgcttcagtccaa
tgtctttaccgcccattgctccagtagcttagtcagacctccctagatta
ctgtaatttacaaaatgaataaaaagtatgaaggctttgttcagattttc
aatgcaccattaatacactgttagaaattggttccaaaaatgaaatttgc
taaattctggaagatttgatgtctcctcctaatgagaagtaacatccctc
acttgctaaaggatccagactttctgatagagacttagctgtttattaat
aatgaatttgaatgttcgcatgtgaattgttatcagcctcacaccacaat
cacatagtaagccctgatggggggttggctgggatcctcattagcagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40696846_40698083
seq2: B6Ng01-218M11.b_44_1277

seq1  GAATTCATTCTCAAGGCCATTCAAACTAATATGGTGACAATTACCTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCAAGGCCATTCAAACTAATATGGTGACAATTACCTGAGT  50

seq1  TTGTAATGCACACAACAGTTCAGAGCATCCTTAGATAAATTGTTCCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGCACACAACAGTTCAGAGCATCCTTAGATAAATTGTTCCCTAG  100

seq1  ACAATGATGCATGCATTGATACCTTCCTATAACTGTCTAGAAGCCTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATGCATGCATTGATACCTTCCTATAACTGTCTAGAAGCCTTAGC  150

seq1  AACAAGGAAATGGTTTGCAATCTTGAGAAACACAGTGGTTTGAGTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAAATGGTTTGCAATCTTGAGAAACACAGTGGTTTGAGTTGCTG  200

seq1  TGGATTTTTAGAAACTGCCAGTGTCTTTACAGAATTTTCAGGCTCCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTAGAAACTGCCAGTGTCTTTACAGAATTTTCAGGCTCCACAT  250

seq1  GCGGCCTCTACAAGGGAATGTTTCTCTTTCACTGCCACCATCATGCGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCTCTACAAGGGAATGTTTCTCTTTCACTGCCACCATCATGCGAAC  300

seq1  TTTTGCAGTGCAATTACAAGCGACTTCAGAGTTCTCTGTGATAGACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTGCAATTACAAGCGACTTCAGAGTTCTCTGTGATAGACTAAT  350

seq1  AGCTACTGACCTGCTTCTGCCACATAGAACCTCCTCATATACTTTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTGACCTGCTTCTGCCACATAGAACCTCCTCATATACTTTTAATA  400

seq1  CCATCTGTGGCGCTCTGCTCTTACCACGGGTGGGCATTTTTCTCTATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTGGCGCTCTGCTCTTACCACGGGTGGGCATTTTTCTCTATATA  450

seq1  GACTCATCTTTGGCAAATCATTAATAGAACATCAAAAAGATCCCATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCTTTGGCAAATCATTAATAGAACATCAAAAAGATCCCATCTGT  500

seq1  TAGAGTTACATATGGTTAAGATCAGAATTATCAAATATCTCATTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTACATATGGTTAAGATCAGAATTATCAAATATCTCATTTTTTTC  550

seq1  TTTATTCCTCTTTCTTATCCTCACAATAAATGTAGTTGTCAGCAGGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTCTTTCTTATCCTCACAATAAATGTAGTTGTCAGCAGGATAA  600

seq1  GTTCATGTGCCGGATAAGGTCACAATTTCATTTAGTGACAACTTCCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTGCCGGATAAGGTCACAATTTCATTTAGTGACAACTTCCAACA  650

seq1  GTAGGAACTTACAAGGTTCGATTTATTAAAGAGTCAGAAGGGATAAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAACTTACAAGGTTCGATTTATTAAAGAGTCAGAAGGGATAAGATC  700

seq1  ACTGCTTGGCCAGGCTGATTTATCAGAGTTTGACTGGAGTACTTGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGGCCAGGCTGATTTATCAGAGTTTGACTGGAGTACTTGAATAG  750

seq1  GGAATGTCGTATTTCAAGTTTATGTTCAAAACAGTAGTTTAGTGTGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCGTATTTCAAGTTTATGTTCAAAACAGTAGTTTAGTGTGTGTT  800

seq1  GTGACTGTATGACTCAAAAATTGAGACAGGGAATTAGAAAAGCTATCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTATGACTCAAAAATTGAGACAGGGAATTAGAAAAGCTATCCTT  850

seq1  ATATGGCAATTTGTTGCCATCACCTAACAGCTATCATTTTCTGAGTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCAATTTGTTGCCATCACCTAACAGCTATCATTTTCTGAGTCAAA  900

seq1  CAATGCTTAGGGTTTCATCAATATAGCATAAAAGAAATGGAGCTGTTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTAGGGTTTCATCAATATAGCATAAAAGAAATGGAGCTGTTTGT  950

seq1  CTTAGAAGGAAGATGGGACATGCAGTTATTAGTGCTGGAGGAAACTGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGGAAGATGGGACATGCAGTTATTAGTGCTGGAGGAAACTGTTT  1000

seq1  GGTGGCAAGACTGTGGTTTGGCTTTGTAGATAGTCGGCAGGGAAGTGTCC  1050
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  GGTGGCAAGACTGTGGTTTGGCTTTGTAGATAGTCGGCA-GGAAGTGTTC  1049

seq1  TAACCTTCCT-GTGTGTCTGGCAGGCAGCTGTCAAATGGTTAAACCTTAA  1099
      | | |||| | |||||||||||||||||||||| |||||||||||| || 
seq2  TTA-CTTCTTGGTGTGTCTGGCAGGCAGCTGTC-AATGGTTAAACC-TAC  1096

seq1  CATAGCAAAGAGCATTGCCAT--ACTTTGGCCACCTTGGCTGACTTTGAA  1147
       |||||||||||||||| | |  |||| ||||||||  |||||||| |||
seq2  AATAGCAAAGAGCATTGGCCTTAACTTGGGCCACCT--GCTGACTTGGAA  1144

seq1  AATGTCTCAGAATCTTTGACCGCTTTTTGAACTCAGCATG---ACTTCAG  1194
      ||  |||||  ||| |||| ||||||||| ||||||||||   ||| |||
seq2  AAGTTCTCAAGATCCTTGA-CGCTTTTTGTACTCAGCATGTGCACTCCAG  1193

seq1  GGCTGTCC-ATGTTTGATACCATGATGTATAATGTTTTCCAACCA  1238
      |   |||| |||||  ||| ||||| || ||  ||||||||||||
seq2  G--CGTCCAATGTTGTATA-CATGA-GTTTATGGTTTTCCAACCA  1234


seq1: chr15_40871881_40872980
seq2: B6Ng01-218M11.g_63_1162 (reverse)

seq1  GTTCTGCTAATGAGGATCCCAGCCA--CCCCCATCAGGGCTAACTATTGG  48
      |||||||||||||||||||||||||  |||||||||||||| |||||  |
seq2  GTTCTGCTAATGAGGATCCCAGCCAACCCCCCATCAGGGCTTACTAT--G  48

seq1  TTGGATTGT-GTGTGA-GCTGATAACATTCCACATGCGAACATTCAAATT  96
      |  |||||| |||||| |||||||||| | ||||||||||||||||||||
seq2  T--GATTGTGGTGTGAGGCTGATAACAATTCACATGCGAACATTCAAATT  96

seq1  CATTATTAATAAACAGCCTAAGTCTCTATCAGAAAGTCTGGATCCTTTAG  146
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATTATTAATAAACAG-CTAAGTCTCTATCAGAAAGTCTGGATCCTTTAG  145

seq1  CAAGTGAGGGATGTTACTTCTCATTAGGAGGAGACATCAAATCTTCCAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGGGATGTTACTTCTCATTAGGAGGAGACATCAAATCTTCCAGA  195

seq1  ATTTAGC-AATTTCATTTTTGGAACCAATTTCTAACAGTGTATTAATGGT  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAAATTTCATTTTTGGAACCAATTTCTAACAGTGTATTAATGGT  245

seq1  GCATTGAAAATCTGAACAAAGCCTTCATACTTTTTATTCATTTTGTAAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAAAATCTGAACAAAGCCTTCATACTTTTTATTCATTTTGTAAAT  295

seq1  TACAGTAATCTAGGGAGGTCTGACTAAGCTACTGGAGCAATGGGCGGTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATCTAGGGAGGTCTGACTAAGCTACTGGAGCAATGGGCGGTAA  345

seq1  AGACATTGGACTGAAGCATTGCGGTTCTAATGATTCTTTTATGATTAAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGGACTGAAGCATTGCGGTTCTAATGATTCTTTTATGATTAAAC  395

seq1  GTTTATGGAGGAAAAAAAATCATCCTAAGAGAGGAAAATTAACTTTCAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGAGGAAAAAAAATCATCCTAAGAGAGGAAAATTAACTTTCAGC  445

seq1  TTGCGCCTTCATTATCTTTGATACCAAAATGGAATGCAGGGTTTTTTTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCCTTCATTATCTTTGATACCAAAATGGAATGCAGGGTTTTTTTCT  495

seq1  GTTTTTTAAAGTTTTAATCTTTTATTTTAAATTTATACATATTAAGGGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAAGTTTTAATCTTTTATTTTAAATTTATACATATTAAGGGGA  545

seq1  GCTTCACAAAACCTGGCAAAAAGGTATAAGCCTATAGAAATTATAGAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACAAAACCTGGCAAAAAGGTATAAGCCTATAGAAATTATAGAAAA  595

seq1  TTTCTTTAGCTAATATTTCAAACTTGTACATTCACACTACGGCTGCTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGCTAATATTTCAAACTTGTACATTCACACTACGGCTGCTGTT  645

seq1  CAAATGAAATGGTTGGAATGCATAGGAATTCATTCAATAGAATAATCTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAATGGTTGGAATGCATAGGAATTCATTCAATAGAATAATCTGT  695

seq1  GTTGAGATAATAAGGATCTGATAGATATCATAATATATGCATAAGTACTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGATAATAAGGATCTGATAGATATCATAATATATGCATAAGTACTC  745

seq1  ATACTATAGATAGAGCTATCTACACCCAGATAGGTTGATATCCAGAATGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATAGATAGAGCTATCTACACCCAGATAGGTTGATATCCAGAATGC  795

seq1  CCCGCAAATTCTGCTTAAATATATAAGAACCATGCTTCTTATCGAGCCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAAATTCTGCTTAAATATATAAGAACCATGCTTCTTATCGAGCCTC  845

seq1  ATTAAATGGAATGTTCTGTTTAGTTGCACATTGGCTAATTGTGCAGCTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGGAATGTTCTGTTTAGTTGCACATTGGCTAATTGTGCAGCTCA  895

seq1  TTCCTTTGTATAGCAAGGAGAGGGTCTAATGACTAGCCATTAAAAACTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTATAGCAAGGAGAGGGTCTAATGACTAGCCATTAAAAACTAC  945

seq1  TGCCCATTTCTGGATAAGGGGATGATTAAACCCTCTAAGTCTCACGTACC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTTCTGGATAAGGGGATGATTAAACCCTCTAAGTCTCACGTACC  995

seq1  AGAAATATGAAATTTAAATGTCTAGAAATTCCATCTTTAACCTGGAATGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGAAATTTAAATGTCTAGAAATTCCATCTTTAACCTGGAATGC  1045

seq1  TTTTTTCAATGTTCAATGGAACACTTACTACAGTCGGATGGCAGCATATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAATGTTCAATGGAACACTTACTACAGTCGGATGGCAGCATATG  1095

seq1  AATTC  1100
      |||||
seq2  AATTC  1100


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