BAC Information

Click to search

BAC

Clone NameB6Ng01-219D03
Chromosome15 (Build37)
Map Location 51,271,139 - 51,383,614
singlet/doubletdoublet
Overlap geneLOC100039662
Upstream geneTrps1, LOC100039644
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219D03.bB6Ng01-219D03.g
ACCGA035108GA035109
length1,1581,171
definitionB6Ng01-219D03.b B6Ng01-219D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,382,259 - 51,383,614)(51,271,139 - 51,272,312)
sequence
gaattctttcatgaattattatgttcagaaggcttctgagttgtaatgaa
aaccaaaacctctggggacaagatcttaagatccacactatcatcccgac
ccaatgtgagatggacatgagataataaacctgtttttttttttaagcta
ccacactcctggtaatttgttctaaggaataaaaaatgaatccatttact
ctccttgactaccctagacagatctcattttaatccacagtgcttcgatc
attctctaagtaaatagaaaagacttttcaaattattttgtaacagtaag
ttctgtctttctctccaggacatgaactctttaataaaaacgtaggtgta
gtgaaaacattttgatatcatggctacctatcttttgtacctggcttcat
catttggcatagcttgacttctggctgtctacttaacctttcctagatct
gtttttattttcagaatgacaataacattactaaaccggatgttctaatc
cagggataattttgcactcccccaggccatatttggtaatcttagagtta
ttttttttttattgtcccagtttggggtggggagtgcatccttatttagt
gggaagaagtgttgctaaatggcatatattgcacagtctgctgaagccag
gccatctggaagagcaccaagcactcttagtcaccgagcactgtgtattg
acccacagtggtactagcaccaaggctgagaaatcctttcctagcctaat
aaaataattatgaagagcgtgaaatgactttcataatatttcatttttag
agaggctggttgcaattccattatgaggagacttttacatttctagggag
aaatttttataaatgttttcatgtgtttttgcttcccctacagggcctta
aaatctttacagtctccccccctccccaatcattgtatgtatgaaggtat
gcacccatgaagtatcttatatggaaactaatccaaaaaaaaaaaatcag
tgtctataagataacctgactcagaatggtcctctctgtgtgtttatgat
tttttttcccattttttataagtattactcatacaatttatgattttatc
tttcattatgtaactaggtatctggagctgcagtgagtaactaatgctga
gtagaaag

gaattctctgggccaccaagatgctggcccatgtgacattcatctgtctc
ttgccttctatctaaatgtatgccctctttgtcccagactgtggatttct
gagtaaggacccactggatttacttttatgtaggtgttaagaaaattatt
tctactatgtaagttctatattgtctactagtcctgggcagttcctgaac
ggtagaagagtagttcgggcactttatgtccatagatgtcactgtgatta
ggactactgagagaacacagtcctgacagcagtgaacaaaaggagaacac
agagggttctgaagatgagagcactttgaaccagagatgtgtgaacccag
aagcattctgagattggcatcatgtctttaactagttttcaaaggaatca
gacttggccaaacccaaagagaactttgccaagcacttttccccttaatt
tttaaacccatgtgtattttaagggaaattcaatccatatgtttctgatt
catttacacttaactcatcaaaatgttgttttgtaagagttatttgatgt
cccagtcttttgagcttttgtaaagaaatgttttgcatccttagaaatag
aaactctttttgggcaagtcacacacacacacacacacacacacacactg
cacacacacacacacaggaactgatccctcaaaaatttgaaatcattgca
aacctcaaggctcacaagtttccagagatgtctttctggtctaacatgac
ttccatctctgtagttatctcagagattttgtcaaggaggcatggagttg
ctcaaggatggaggtctaactgacaaaaactataaaacaaggataattaa
aagctccaaaaagggagacatagatgctgaggttggtagaaagatgcaag
gaagctataaatcaaacaccagaaacaagaggataaaagagcaaaatatc
tgtatactattcaaaagttgagaagggaaaggaggaaaatgtgcaacaaa
tatatgtcctggaacacatctatcagacctccaggatcctggatttaaga
aaacaatgccctgtcatagggagctatcatcaaaatatgttcctaataat
tctgatggtgatgtgttcttgagcaatgtagttttgctaccactctgcag
gcctggctggcttgggatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51382259_51383614
seq2: B6Ng01-219D03.b_45_1202 (reverse)

seq1  CTTTCTACTCAGCCCTTTGAAGGAAAAACCAGGTTAGAAGTACTGAGTTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAACCGAGGTTGCGTGGTTTTCTACTGCAGCTTCAGTCTTGCTGTAAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTAATCACCGGTGCTTCGTCGTAGATGTGAAATGCTAGGGAGACCTAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACTACAGGAAAATAGTAGTTTTAAAGGGGAGGGCTTATCTACTCAGGCAT  200
                                       ||| |||||||| ||||
seq2  ---------------------------------CTT-TCTACTCA-GCAT  15

seq1  TTAGTACTCACTTGCAAACTCCAGATA-CTAGTTACATTAAATAGAAGAT  249
      |   ||||||| ||| | ||||||||| ||||||||||  |||  |||||
seq2  TAGTTACTCAC-TGC-AGCTCCAGATACCTAGTTACAT--AATGAAAGAT  61

seq1  AAAAATCATAAATTGTAAATGAGTTAAATACCTAATAAAAAATGGGAAAA  299
       |||||||||||||||  ||||||  |||| || ||||||||||||||||
seq2  -AAAATCATAAATTGT--ATGAGT--AATA-CTTATAAAAAATGGGAAAA  105

seq1  AAAATCATAAAACACACAGAGAGGACCATTCTGAGTCAGGTTTATCTTAT  349
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  AAAATCAT-AAACACACAGAGAGGACCATTCTGAGTCAGG-TTATCTTAT  153

seq1  AGACACTGATTTTTTTTTTTTGGATTAGTTTCCATATAAGATACTTTCAT  399
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGACACTGATTTTTTTTTTTTGGATTAGTTTCCATATAAGATAC-TTCAT  202

seq1  GGGTGCATACCTTCATACATACAATGATTGGGGGAGGGGGGGAGACTGTA  449
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGTGCATACCTTCATACATACAATGATT-GGGGAGGGGGGGAGACTGTA  251

seq1  AAGATTTTAAGGCCCTGTAGGGGAAGCAAAAACACATGAAAACATTTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTAAGGCCCTGTAGGGGAAGCAAAAACACATGAAAACATTTATA  301

seq1  AAAATTTCTCCCTAGAAATGTAAAAGTCTCCTCATAATGGAATTGCAACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTCCCTAGAAATGTAAAAGTCTCCTCATAATGGAATTGCAACC  351

seq1  AGCCTCTCTAAAAATGAAATATTATGAAAGTCATTTCACGCTCTTCATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCTAAAAATGAAATATTATGAAAGTCATTTCACGCTCTTCATAA  401

seq1  TTATTTTATTAGGCTAGGAAAGGATTTCTCAGCCTTGGTGCTAGTACCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTAGGCTAGGAAAGGATTTCTCAGCCTTGGTGCTAGTACCAC  451

seq1  TGTGGGTCAATACACAGTGCTCGGTGACTAAGAGTGCTTGGTGCTCTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCAATACACAGTGCTCGGTGACTAAGAGTGCTTGGTGCTCTTCC  501

seq1  AGATGGCCTGGCTTCAGCAGACTGTGCAATATATGCCATTTAGCAACACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTGGCTTCAGCAGACTGTGCAATATATGCCATTTAGCAACACT  551

seq1  TCTTCCCACTAAATAAGGATGCACTCCCCACCCCAAACTGGGACAATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCACTAAATAAGGATGCACTCCCCACCCCAAACTGGGACAATAAA  601

seq1  AAAAAAATAACTCTAAGATTACCAAATATGGCCTGGGGGAGTGCAAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAACTCTAAGATTACCAAATATGGCCTGGGGGAGTGCAAAATT  651

seq1  ATCCCTGGATTAGAACATCCGGTTTAGTAATGTTATTGTCATTCTGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGATTAGAACATCCGGTTTAGTAATGTTATTGTCATTCTGAAAA  701

seq1  TAAAAACAGATCTAGGAAAGGTTAAGTAGACAGCCAGAAGTCAAGCTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGATCTAGGAAAGGTTAAGTAGACAGCCAGAAGTCAAGCTATG  751

seq1  CCAAATGATGAAGCCAGGTACAAAAGATAGGTAGCCATGATATCAAAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGATGAAGCCAGGTACAAAAGATAGGTAGCCATGATATCAAAATG  801

seq1  TTTTCACTACACCTACGTTTTTATTAAAGAGTTCATGTCCTGGAGAGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTACACCTACGTTTTTATTAAAGAGTTCATGTCCTGGAGAGAAA  851

seq1  GACAGAACTTACTGTTACAAAATAATTTGAAAAGTCTTTTCTATTTACTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACTTACTGTTACAAAATAATTTGAAAAGTCTTTTCTATTTACTT  901

seq1  AGAGAATGATCGAAGCACTGTGGATTAAAATGAGATCTGTCTAGGGTAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGATCGAAGCACTGTGGATTAAAATGAGATCTGTCTAGGGTAGT  951

seq1  CAAGGAGAGTAAATGGATTCATTTTTTATTCCTTAGAACAAATTACCAGG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAGTAAATGGATTCATTTTTTATTCCTTAGAACAAATTACCAGG  1001

seq1  AGTGTGGTAGCTTAAAAAAAAAAACAGGTTTATTATCTCATGTCCATCTC  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTAGCTTAAAAAAAAAAACAGGTTTATTATCTCATGTCCATCTC  1051

seq1  ACATTGGGTCGGGATGATAGTGTGGATCTTAAGATCTTGTCCCCAGAGGT  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGGTCGGGATGATAGTGTGGATCTTAAGATCTTGTCCCCAGAGGT  1101

seq1  TTTGGTTTTCATTACAACTCAGAAGCCTTCTGAACATAATAATTCATGAA  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTCATTACAACTCAGAAGCCTTCTGAACATAATAATTCATGAA  1151

seq1  AGAATTC  1356
      |||||||
seq2  AGAATTC  1158


seq1: chr15_51271139_51272312
seq2: B6Ng01-219D03.g_66_1236

seq1  GAATTCTCTGGGCCACCAAGATGCTGGCCCATGTGACATTCATCTGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGCCACCAAGATGCTGGCCCATGTGACATTCATCTGTCTC  50

seq1  TTGCCTTCTATCTAAATGTATGCCCTCTTTGTCCCAGACTGTGGATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCTATCTAAATGTATGCCCTCTTTGTCCCAGACTGTGGATTTCT  100

seq1  GAGTAAGGACCCACTGGATTTACTTTTATGTAGGTGTTAAGAAAATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGACCCACTGGATTTACTTTTATGTAGGTGTTAAGAAAATTATT  150

seq1  TCTACTATGTAAGTTCTATATTGTCTACTAGTCCTGGGCAGTTCCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATGTAAGTTCTATATTGTCTACTAGTCCTGGGCAGTTCCTGAAC  200

seq1  GGTAGAAGAGTAGTTCGGGCACTTTATGTCCATAGATGTCACTGTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGAGTAGTTCGGGCACTTTATGTCCATAGATGTCACTGTGATTA  250

seq1  GGACTACTGAGAGAACACAGTCCTGACAGCAGTGAACAAAAGGAGAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACTGAGAGAACACAGTCCTGACAGCAGTGAACAAAAGGAGAACAC  300

seq1  AGAGGGTTCTGAAGATGAGAGCACTTTGAACCAGAGATGTGTGAACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTCTGAAGATGAGAGCACTTTGAACCAGAGATGTGTGAACCCAG  350

seq1  AAGCATTCTGAGATTGGCATCATGTCTTTAACTAGTTTTCAAAGGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCTGAGATTGGCATCATGTCTTTAACTAGTTTTCAAAGGAATCA  400

seq1  GACTTGGCCAAACCCAAAGAGAACTTTGCCAAGCACTTTTCCCCTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGCCAAACCCAAAGAGAACTTTGCCAAGCACTTTTCCCCTTAATT  450

seq1  TTTAAACCCATGTGTATTTTAAGGGAAATTCAATCCATATGTTTCTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCCATGTGTATTTTAAGGGAAATTCAATCCATATGTTTCTGATT  500

seq1  CATTTACACTTAACTCATCAAAATGTTGTTTTGTAAGAGTTATTTGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACACTTAACTCATCAAAATGTTGTTTTGTAAGAGTTATTTGATGT  550

seq1  CCCAGTCTTTTGAGCTTTTGTAAAGAAATGTTTTGCATCCTTAGAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTTTTGAGCTTTTGTAAAGAAATGTTTTGCATCCTTAGAAATAG  600

seq1  AAACTCTTTTTGGGCAAGTCACACACACACACACACACACACACACAC-A  649
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AAACTCTTTTTGGGCAAGTCACACACACACACACACACACACACACACTG  650

seq1  CACACACACACACACAGGAACTGATCCCTCAAAAATTTGAAATCATTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAGGAACTGATCCCTCAAAAATTTGAAATCATTGCA  700

seq1  AACCTCAAGGCTCACAAGTTTCCAGAGATGTCTTTCTGGTCTAACATGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAGGCTCACAAGTTTCCAGAGATGTCTTTCTGGTCTAACATGAC  750

seq1  TTCCATCTCTGTAGTTATCTCAGAGATTTTGTCAAGGAGGCATGGAGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTCTGTAGTTATCTCAGAGATTTTGTCAAGGAGGCATGGAGTTG  800

seq1  CTCAAGGATGGAGGTCTAACTGACAAAAACTATAAAACAAGGATAATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGATGGAGGTCTAACTGACAAAAACTATAAAACAAGGATAATTAA  850

seq1  AAGCTCCAAAAAGGGAGACATAGATGCTGAGGTTGGTAGAAAGATGCAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCAAAAAGGGAGACATAGATGCTGAGGTTGGTAGAAAGATGCAAG  900

seq1  GAAGCTATAAATCAAACACCAGAAACAAAGAGGATAAAAGAGCAAAATAT  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGCTATAAATCAAACACCAGAAAC-AAGAGGATAAAAGAGCAAAATAT  949

seq1  CTGTATACTATTC-AAAGTTGAGAAGGGGAAAGAGGAAAATGTGC-ACAA  997
      ||||||||||||| |||||||||||||| || ||||||||||||| ||||
seq2  CTGTATACTATTCAAAAGTTGAGAAGGGAAAGGAGGAAAATGTGCAACAA  999

seq1  ATATATGTCCTGGAACACATCTATCAGACCTTCAGGATCCT-GATTTAGA  1046
      ||||||||||||||||||||||||||||||| ||||||||| ||||||  
seq2  ATATATGTCCTGGAACACATCTATCAGACCTCCAGGATCCTGGATTTAAG  1049

seq1  AAAACAAATGCCCTGGCCATAAGGGAAGCTATCATCAAAATATGTTCCTA  1096
      ||||| |||||||| | ||||  || ||||||||||||||||||||||||
seq2  AAAAC-AATGCCCT-GTCATA--GGGAGCTATCATCAAAATATGTTCCTA  1095

seq1  ATTATTCTGATGTGAATGTGTTCTTGAGCAATGGTAGTTTTTGCTACCCA  1146
      || |||||||||   ||||||||||||||||| |||| |||||||| |||
seq2  ATAATTCTGATGGTGATGTGTTCTTGAGCAAT-GTAG-TTTTGCTA-CCA  1142

seq1  CTCTGCAGG-CTTGCTTGCTTGGGTTCTG  1174
      ||||||||| || ||| ||||||| ||||
seq2  CTCTGCAGGCCTGGCTGGCTTGGGATCTG  1171


| Home | SequenceCutter | Blast | Download |