BAC Information

Click to search

BAC

Clone NameB6Ng01-219K07
Chromosome15 (Build37)
Map Location 11,998,144 - 12,167,907
singlet/doubletdoublet
Overlap geneZfr, LOC100040052, LOC100040066, Mtmr12
Upstream geneAdamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027
Downstream geneLOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219K07.bB6Ng01-219K07.g
ACCGA035420GA035421
length1,176442
definitionB6Ng01-219K07.b B6Ng01-219K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,166,739 - 12,167,907)(11,998,144 - 11,998,591)
sequence
gaattccagcattcaaaagactaagagaggaagttcctgagtttgaggtc
agtttgggctacagggagagacaaaaccaaaaccaaacagaaacgcccct
gactatcacaatgacagctcagaagagacttaccagtgccgtgcacagca
gcggcgtaggagaacagaaacagtcttttcagcagtttggggctctgggt
atgatggattatgccactgacgatctagagaagagaggaccattggatac
agttacgcttctgacagatcaaggctaagaaaggtaagagccaacttatc
tctgctctctatcccactagcagggctctagggacaccacagcctttgct
gaagctggagttagctcttggaatggtgccagagcgaacagaacattatt
tgtcatgctttctaagagttcttaatttctagggaaaagttaaaacagtc
gatattcccagaaaccaagagttaaaaatcttaactgccctattaggtca
ggtccaagtagtcaacatatctaagactcacaactgatatcagacaataa
gcaagacattagctgacttgattgtgggttctctggacaatgaaggaaag
ggactaactagggctgcagctcagtcagtcgtacccttgcccaacgtgca
caaggccctagtagcacatgcctgtagtcccagctcaggagctggaggga
ggaggatcaaagcttcaaggtcatccccagctacagagaaaggccagcct
gggctacacatccccagctacagagaaaggccagcctgggctacacaaca
ccttgtcttgaaaggaaaaaggaaagaaatctgtctactgtgctttctgt
ctgtttattgtgttaacaaaactatgtttggataaatgactaaaataact
gttcaaaaggaaatgcttggtctcttgggggattttctccatcttcagct
ttctttggctgctcagagagatactacaatcacatttcctactctaactg
aactacttccactatctgaaagagaatagggcattattccggagtggtgc
ataattcactgcagataagaacaatattaaagcaatggcttcttgttggc
tttcccttacatggagcacttcttagagggggcaagaccttccactgtct
tgacaagaaaaccttaagaaaatata
aaagcatactgtagaaggagatagactctttacatcaaaaccaagtgtcc
tccgtccctactcagtttttactgcaagtttgaggacttaaaaaaaatta
gaagacagttaggaaagggagagaggcccaggcacagtgcttgcctggca
tgctggactaaacatttacaactcctagtgaggcaaatattggggggagg
gggaaacaagccaaggaaggagcagcaatctgtcttaaaccattcaaaac
tgcacgcctgcacacaaaggtaggaaacctggaagaaagtccttaaagca
gagaagaaaaaaggcccaaatcttcagctctcttgaggaccctctgagga
agactgcccagactctgtctgcacttcatcagaaagccatgtgcaggctg
catcagacagttatttcctttccaacgggggtgggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12166739_12167907
seq2: B6Ng01-219K07.b_46_1221 (reverse)

seq1  TATAATTTCTTAGGTTTTTCTTGTCAAGACAGT-GAAGGTCTTG-CCCCT  48
      |||| ||||||| | |||||||||||||||||| |||||||||| |||||
seq2  TATATTTTCTTAAGGTTTTCTTGTCAAGACAGTGGAAGGTCTTGCCCCCT  50

seq1  CTAAG-AGTGCT-CATGTTAGGGAAAGCCCAACAAGAAGCCATTTGCTT-  95
      ||||| |||||| ||||| |||||||| |||||||||||||| |||||| 
seq2  CTAAGAAGTGCTCCATGTAAGGGAAAG-CCAACAAGAAGCCA-TTGCTTT  98

seq1  -ATATTG-TCTTATCTGCAGTGAATTATGCA-CACTCC-GAATAATGCCC  141
       |||||| ||||||||||||||||||||||| |||||| |||||||||||
seq2  AATATTGTTCTTATCTGCAGTGAATTATGCACCACTCCGGAATAATGCCC  148

seq1  TATTCTCTTTCAGATAGTGG-AGTAGTTCAGTTAGAGTAGGAAATGTGAT  190
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATTCTCTTTCAGATAGTGGAAGTAGTTCAGTTAGAGTAGGAAATGTGAT  198

seq1  TGTAGTATCTCTTCTGAGCAGCCAAAGAAAGCTGAAGATGGAGAAAATCC  240
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATCTC-TCTGAGCAGCCAAAGAAAGCTGAAGATGGAGAAAATCC  247

seq1  CCCAAGAGACCAAGCATTTCCTTTTGAACAGTTATTTTAGTCATTTATCC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGACCAAGCATTTCCTTTTGAACAGTTATTTTAGTCATTTATCC  297

seq1  AAACATAGTTTTGTTAACACAATAAACAGACAGAAAGCACAGTAGACAGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGTTTTGTTAACACAATAAACAGACAGAAAGCACAGTAGACAGA  347

seq1  TTTCTTTCCTTTTTCCTTTCAAGACAAGGTGTTGTGTAGCCCAGGCTGGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCTTTTTCCTTTCAAGACAAGGTGTTGTGTAGCCCAGGCTGGC  397

seq1  CTTTCTCTGTAGCTGGGGATGTGTAGCCCAGGCTGGCCTTTCTCTGTAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGTAGCTGGGGATGTGTAGCCCAGGCTGGCCTTTCTCTGTAGC  447

seq1  TGGGGATGACCTTGAAGCTTTGATCCTCCTCCCTCCAGCTCCTGAGCTGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGACCTTGAAGCTTTGATCCTCCTCCCTCCAGCTCCTGAGCTGG  497

seq1  GACTACAGGCATGTGCTACTAGGGCCTTGTGCACGTTGGGCAAGGGTACG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGGCATGTGCTACTAGGGCCTTGTGCACGTTGGGCAAGGGTACG  547

seq1  ACTGACTGAGCTGCAGCCCTAGTTAGTCCCTTTCCTTCATTGTCCAGAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGAGCTGCAGCCCTAGTTAGTCCCTTTCCTTCATTGTCCAGAGA  597

seq1  ACCCACAATCAAGTCAGCTAATGTCTTGCTTATTGTCTGATATCAGTTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAATCAAGTCAGCTAATGTCTTGCTTATTGTCTGATATCAGTTGT  647

seq1  GAGTCTTAGATATGTTGACTACTTGGACCTGACCTAATAGGGCAGTTAAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAGATATGTTGACTACTTGGACCTGACCTAATAGGGCAGTTAAG  697

seq1  ATTTTTAACTCTTGGTTTCTGGGAATATCGACTGTTTTAACTTTTCCCTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACTCTTGGTTTCTGGGAATATCGACTGTTTTAACTTTTCCCTA  747

seq1  GAAATTAAGAACTCTTAGAAAGCATGACAAATAATGTTCTGTTCGCTCTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAGAACTCTTAGAAAGCATGACAAATAATGTTCTGTTCGCTCTG  797

seq1  GCACCATTCCAAGAGCTAACTCCAGCTTCAGCAAAGGCTGTGGTGTCCCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTCCAAGAGCTAACTCCAGCTTCAGCAAAGGCTGTGGTGTCCCT  847

seq1  AGAGCCCTGCTAGTGGGATAGAGAGCAGAGATAAGTTGGCTCTTACCTTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCTGCTAGTGGGATAGAGAGCAGAGATAAGTTGGCTCTTACCTTT  897

seq1  CTTAGCCTTGATCTGTCAGAAGCGTAACTGTATCCAATGGTCCTCTCTTC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTTGATCTGTCAGAAGCGTAACTGTATCCAATGGTCCTCTCTTC  947

seq1  TCTAGATCGTCAGTGGCATAATCCATCATACCCAGAGCCCCAAACTGCTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATCGTCAGTGGCATAATCCATCATACCCAGAGCCCCAAACTGCTG  997

seq1  AAAAGACTGTTTCTGTTCTCCTACGCCGCTGCTGTGCACGGCACTGGTAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGTTTCTGTTCTCCTACGCCGCTGCTGTGCACGGCACTGGTAA  1047

seq1  GTCTCTTCTGAGCTGTCATTGTGATAGTCAGGGGCGTTTCTGTTTGGTTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTGAGCTGTCATTGTGATAGTCAGGGGCGTTTCTGTTTGGTTT  1097

seq1  TGGTTTTGTCTCTCCCTGTAGCCCAAACTGACCTCAAACTCAGGAACTTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTCTCTCCCTGTAGCCCAAACTGACCTCAAACTCAGGAACTTC  1147

seq1  CTCTCTTAGTCTTTTGAATGCTGGAATTC  1169
      |||||||||||||||||||||||||||||
seq2  CTCTCTTAGTCTTTTGAATGCTGGAATTC  1176

seq1: chr15_11998144_11998591
seq2: B6Ng01-219K07.g_65_512

seq1  GAATTCAAAGCATACTGTAGAAGGAGATAGACTCTTTACATCAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCATACTGTAGAAGGAGATAGACTCTTTACATCAAAACCAA  50

seq1  GTGTCCTCCGTCCCTACTCAGTTTTTACTGCAAGTTTGAGGACTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCCGTCCCTACTCAGTTTTTACTGCAAGTTTGAGGACTTAAAAA  100

seq1  AAATTAGAAGACAGTTAGGAAAGGGAGAGAGGCCCAGGCACAGTGCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAAGACAGTTAGGAAAGGGAGAGAGGCCCAGGCACAGTGCTTGC  150

seq1  CTGGCATGCTGGACTAAACATTTACAACTCCTAGTGAGGCAAATATTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGCTGGACTAAACATTTACAACTCCTAGTGAGGCAAATATTGGG  200

seq1  GGGAGGGGGAAACAAGCCAAGGAAGGAGCAGCAATCTGTCTTAAACCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGAAACAAGCCAAGGAAGGAGCAGCAATCTGTCTTAAACCATT  250

seq1  CAAAACTGCACGCCTGCACACAAAGGTAGGAAACCTGGAAGAAAGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGCACGCCTGCACACAAAGGTAGGAAACCTGGAAGAAAGTCCTT  300

seq1  AAAGCAGAGAAGAAAAAAGGCCCAAATCTTCAGCTCTCTTGAGGACCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGAAGAAAAAAGGCCCAAATCTTCAGCTCTCTTGAGGACCCTC  350

seq1  TGAGGAAGACTGCCCAGACTCTGTCTGCACTTCATCAGAAAGCCATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGACTGCCCAGACTCTGTCTGCACTTCATCAGAAAGCCATGTGC  400

seq1  AGGCTGCATCAGACAGTTATTTCCTTTCCAACGGGGGTGGGGGTGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCATCAGACAGTTATTTCCTTTCCAACGGGGGTGGGGGTGGGG  448