BAC Information

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BAC

Clone NameB6Ng01-219M08
Chromosome15 (Build37)
Map Location 82,732,537 - 82,869,761
singlet/doubletdoublet
Overlap geneTcf20, Nfam1
Upstream geneAco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
Downstream geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219M08.bB6Ng01-219M08.g
ACCGA035510GA035511
length8361,166
definitionB6Ng01-219M08.b B6Ng01-219M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,868,929 - 82,869,761)(82,732,537 - 82,733,723)
sequence
gaattccctgagggtcactgaaggaatccctgaaaacagttgggcctaca
ttctttgctggctttggatttgaggtttctgagggtgagacagatgtgta
ggttagacacactctctgcagccctgggagagaggctgccccagccatag
ggaaaaggaaaaagggaagtggagaggaggggagggtagcagaggagaca
gaactttcctaaggaatgaggctaagtccggggacagtcctaagagacct
cctgtagctgcccagcttcctgaactccaccccttgcaataaccttcagc
tgccctggcaggtggaggaagttcctgcatggcctccctttcctgtccca
cctcttgttcccgaaaactcccctgccaccttcccatcctacagcccttc
atcagacagcatagaccactcaggtctgtagccttcatgtcttcttgagg
aatccttgttagaagcaactcctcagtgccctcccatctagggaccggaa
acaaggaaccagctgcctgcagaagagacagggaggggggcccatgtggc
ctaagtgggtcttgaactcttttttctttgtttaattcccccactcccac
cccagacacgtctttctctgttccagccctggctttcctggaattcgatt
tgtagatcaggctggcctcaaactcatggagatgcacctgcctctgcctc
tggggattaaaggcatataccaccaccacccaccaccacccaccaccaca
ggccttgaactcttgatcctcctgtctccacctctcaagtactgggctca
caggtgtgcagccagctaacacttgtctctgttatg
gaattcatgcagtaccagacacaactaactctaacaccaccatgcactgt
gatacacgcttggagtccaaggatgcaggagactgaaagaaggatatcac
tgtaaattggaggccagaacagctgagcagataaagctcagggaaattaa
ttgctacccaaagtcctacaactcagggtcgttactttgttttgagacag
agtctcagaggctggcttcaagtcatcatcctccagactcagcctctggg
gtgctgggatcgcggccctgacaatactacacccagcttgcttcagcctc
ttgtatcctccttgtctcaaatgtatccatctcagttttctttctatact
ttgtagtcttttaaagaaaacaaagtaaatgagctgtttctttctcccat
ctctcctaacccagtccactctaaactacctattgaacggaatcactgtg
tatcaattccagaggcaaaactaatcccttctctctttctctggctctga
gatggcttttggaaaccctgtgtcactccttttattactaactcctcagc
cctcctccaagaacctgggccgctctgggattacaaatggagccttctgc
ctctaggtcactgattctgctaccatctgtcagcacggattgattgagga
gactggccctgctcagcagatcagtgacttgtgagaactgagccagggtg
tctgtttcagctgcaggctggtgtcgtccttccccatactagctgactct
cttgagcaagggaacagccctcacctttatccctcagcagactcctgctc
tcctttctcttgggaggggccactggctaacaactctgacccaccaagaa
gacagcctggattcctacttcacaatcctggggcttcacctctagtcttg
cagctttcaaagtctgtggtggacagaaggggaaactgcccccaacacta
tgcagtgcctgtcccacgccaggtattttccccagccagagcggagatac
tgagcgtgctagcgctcagcatggctgatgctctggccatggctcatcca
cagttcactgcagtctttgagactgtagcctttctctcagcaaagtgaga
gccttcaagctgggtgggatgccaagactgtatgtagacctttggcccct
gctataggccaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82868929_82869761
seq2: B6Ng01-219M08.b_45_880 (reverse)

seq1  CATAACAGAGACAAGTGTTAGCTGGCTGCACACCTGTGAGCCCAGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGAGACAAGTGTTAGCTGGCTGCACACCTGTGAGCCCAGTACTT  50

seq1  GAGAGGTGGAGACAGGAGGATCAAGAGTTCAAGGCCTGTGGTGGT-GGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGAGGTGGAGACAGGAGGATCAAGAGTTCAAGGCCTGTGGTGGTGGGTG  100

seq1  GTGGT-GGTGGTGGTGGTATATGCCTTTAAT-CCCAGAGGCAGAGGCAGG  147
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGGTGGGTGGTGGTGGTATATGCCTTTAATCCCCAGAGGCAGAGGCAGG  150

seq1  TGCATCTCCATGAGTTTGAGGCCAGCCTGATCTACAAATCGAATTCCAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCCATGAGTTTGAGGCCAGCCTGATCTACAAATCGAATTCCAGG  200

seq1  AAAGCCAGGGCTGGAACAGAGAAAGACGTGTCTGGGGTGGGAGTGGGGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGGCTGGAACAGAGAAAGACGTGTCTGGGGTGGGAGTGGGGGA  250

seq1  ATTAAACAAAGAAAAAAGAGTTCAAGACCCACTTAGGCCACATGGGCCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAAGAAAAAAGAGTTCAAGACCCACTTAGGCCACATGGGCCCC  300

seq1  CCTCCCTGTCTCTTCTGCAGGCAGCTGGTTCCTTGTTTCCGGTCCCTAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTCTCTTCTGCAGGCAGCTGGTTCCTTGTTTCCGGTCCCTAGA  350

seq1  TGGGAGGGCACTGAGGAGTTGCTTCTAACAAGGATTCCTCAAGAAGACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGCACTGAGGAGTTGCTTCTAACAAGGATTCCTCAAGAAGACAT  400

seq1  GAAGGCTACAGACCTGAGTGGTCTATGCTGTCTGATGAAGGGCTGTAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTACAGACCTGAGTGGTCTATGCTGTCTGATGAAGGGCTGTAGGA  450

seq1  TGGGAAGGTGGCAGGGGAGTTTTCGGGAACAAGAGGTGGGACAGGAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGTGGCAGGGGAGTTTTCGGGAACAAGAGGTGGGACAGGAAAGG  500

seq1  GAGGCCATGCAGGAACTTCCTCCACCTGCCAGGGCAGCTGAAGGTTATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATGCAGGAACTTCCTCCACCTGCCAGGGCAGCTGAAGGTTATTG  550

seq1  CAAGGGGTGGAGTTCAGGAAGCTGGGCAGCTACAGGAGGTCTCTTAGGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGTGGAGTTCAGGAAGCTGGGCAGCTACAGGAGGTCTCTTAGGAC  600

seq1  TGTCCCCGGACTTAGCCTCATTCCTTAGGAAAGTTCTGTCTCCTCTGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCGGACTTAGCCTCATTCCTTAGGAAAGTTCTGTCTCCTCTGCTA  650

seq1  CCCTCCCCTCCTCTCCACTTCCCTTTTTCCTTTTCCCTATGGCTGGGGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCCTCTCCACTTCCCTTTTTCCTTTTCCCTATGGCTGGGGCA  700

seq1  GCCTCTCTCCCAGGGCTGCAGAGAGTGTGTCTAACCTACACATCTGTCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTCCCAGGGCTGCAGAGAGTGTGTCTAACCTACACATCTGTCTC  750

seq1  ACCCTCAGAAACCTCAAATCCAAAGCCAGCAAAGAATGTAGGCCCAACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGAAACCTCAAATCCAAAGCCAGCAAAGAATGTAGGCCCAACTG  800

seq1  TTTTCAGGGATTCCTTCAGTGACCCTCAGGGAATTC  833
      ||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGGATTCCTTCAGTGACCCTCAGGGAATTC  836

seq1: chr15_82732537_82733723
seq2: B6Ng01-219M08.g_68_1233

seq1  GAATTCATGCAGTACCAGACACAACTAACTCTAACACCACCATGCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGTACCAGACACAACTAACTCTAACACCACCATGCACTGT  50

seq1  GATACACGCTTGGAGTCCAAGGATGCAGGAGACTGAAAGAAGGATATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACGCTTGGAGTCCAAGGATGCAGGAGACTGAAAGAAGGATATCAC  100

seq1  TGTAAATTGGAGGCCAGAACAGCTGAGCAGATAAAGCTCAGGGAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTGGAGGCCAGAACAGCTGAGCAGATAAAGCTCAGGGAAATTAA  150

seq1  TTGCTACCCAAAGTCCTACAACTCAGGGTCGTTACTTTGTTTTGAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACCCAAAGTCCTACAACTCAGGGTCGTTACTTTGTTTTGAGACAG  200

seq1  AGTCTCAGAGGCTGGCTTCAAGTCATCATCCTCCAGACTCAGCCTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGAGGCTGGCTTCAAGTCATCATCCTCCAGACTCAGCCTCTGGG  250

seq1  GTGCTGGGATCGCGGCCCTGACAATACTACACCCAGCTTGCTTCAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATCGCGGCCCTGACAATACTACACCCAGCTTGCTTCAGCCTC  300

seq1  TTGTATCCTCCTTGTCTCAAATGTATCCATCTCAGTTTTCTTTCTATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCTCCTTGTCTCAAATGTATCCATCTCAGTTTTCTTTCTATACT  350

seq1  TTGTAGTCTTTTAAAGAAAACAAAGTAAATGAGCTGTTTCTTTCTCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTCTTTTAAAGAAAACAAAGTAAATGAGCTGTTTCTTTCTCCCAT  400

seq1  CTCTCCTAACCCAGTCCACTCTAAACTACCTATTGAACGGAATCACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTAACCCAGTCCACTCTAAACTACCTATTGAACGGAATCACTGTG  450

seq1  TATCAATTCCAGAGGCAAAACTAATCCCTTCTCTCTTTCTCTGGCTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTCCAGAGGCAAAACTAATCCCTTCTCTCTTTCTCTGGCTCTGA  500

seq1  GATGGCTTTTGGAAACCCTGTGTCACTCCTTTTATTACAAACTCCTCAGC  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATGGCTTTTGGAAACCCTGTGTCACTCCTTTTATTACTAACTCCTCAGC  550

seq1  CCTCCTCCAAGAACCTGGGCCGCTCTGGGATTACAAATGGAGCCTTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCAAGAACCTGGGCCGCTCTGGGATTACAAATGGAGCCTTCTGC  600

seq1  CTCTAGGTCACTGATTCTGCTACCATCTGTCAGCACGGATTGATTGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTCACTGATTCTGCTACCATCTGTCAGCACGGATTGATTGAGGA  650

seq1  GACTGGCCCTGCTCAGCAGATCAGTGACTTGTGAGAACTGAGCCAGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCCTGCTCAGCAGATCAGTGACTTGTGAGAACTGAGCCAGGGTG  700

seq1  TCTGTTTCAGCTGCAGGCTGGTGTCGTCCTTCCCCATACTAGCTGACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCAGCTGCAGGCTGGTGTCGTCCTTCCCCATACTAGCTGACTCT  750

seq1  CTTGAGCAAGGGAACAGCCCTCACCTTTATCCCTCAGCAGACTCCTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCAAGGGAACAGCCCTCACCTTTATCCCTCAGCAGACTCCTGCTC  800

seq1  TCCTTTCTCTTGGGAGGGGCCACTGGCTAACAACTCTGACCCACCAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCTTGGGAGGGGCCACTGGCTAACAACTCTGACCCACCAAGAA  850

seq1  GACAGCCTGGATTCCTACTTCACAATCCTGGGGCTTCACCTCTAGTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTGGATTCCTACTTCACAATCCTGGGGCTTCACCTCTAGTCTTG  900

seq1  CAGCTTTCAAAAGTCTGTGGTGGACAGAAGGGGAAACTGCCCCCAACACT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTC-AAAGTCTGTGGTGGACAGAAGGGGAAACTGCCCCCAACACT  949

seq1  ATGCAGTGCCTGTCCCACGCCAGGTATTTTCCCCAGGCCAAGAGCGGAGA  1000
      ||||||||||||||||||||||||||||||||||||  | ||||||||||
seq2  ATGCAGTGCCTGTCCCACGCCAGGTATTTTCCCCAG--CCAGAGCGGAGA  997

seq1  TACTGAGCGTGCTTAGGCGCTCAGGCATGGCTTGATGCTCTGGGCATGCC  1050
      |||||||||||||   ||||||| ||||||| ||||||||||| |||| |
seq2  TACTGAGCGTGCT--AGCGCTCA-GCATGGC-TGATGCTCTGGCCATGGC  1043

seq1  TTCATTCCACAGGTTCACCTGCAGTCTTTGAGACTGTAAGCTTTCTC-AG  1099
       ||| |||||| ||||| ||||||||||||||||||||  |||||||   
seq2  -TCA-TCCACA-GTTCA-CTGCAGTCTTTGAGACTGTAGCCTTTCTCTCA  1089

seq1  GCAAGGTGAAGAAAGGCTTTAAAGCCTTGGGTGGGGATGCCCAAGACTGT  1149
      |||| ||| |||   || || ||||  ||||| |||||| ||||||||||
seq2  GCAAAGTG-AGA---GCCTTCAAGC--TGGGT-GGGATG-CCAAGACTGT  1131

seq1  ATGTGGAGGGAACTATTGCCCCTGCTAT-GCACAAGAGA  1187
      ||||     || || | ||||||||||| |  |||||||
seq2  ATGT----AGACCTTTGGCCCCTGCTATAGGCCAAGAGA  1166